mRNA_H-paniculata_contig1635.3635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: A0A6H5KD88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD88_9PHAE) HSP 1 Score: 128 bits (322), Expect = 4.180e-32 Identity = 91/155 (58.71%), Postives = 109/155 (70.32%), Query Frame = 2
Query: 35 MFSALMAAAVRQCSPATALAAIPSTSVSLFAGSICVAKRXXXXXXXXXXXXXXXXXXRRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTKRRSIHVVKAPVDHALLEAQKMENEAREARIRAASGIYAKL 499
MF L +A R+C + +LFAG+ C XXXXXXXXXXXXXXXXXX LGVKKFGGE V+AGNII+RQRGTQF+PGK VGMGKDHT+F++ G V+F R FTKRR++ V+KA VD + A E +AREAR RAASGIY +
Sbjct: 1 MFGVLTSALARECRSVVT----GRMAGALFAGTTCXXXXXXXXXXXXXXXXXXXXXXXXLGVKKFGGENVVAGNIIIRQRGTQFYPGKGVGMGKDHTLFAMHPGFVVFSRSPFTKRRTVSVMKAKVDTEAVAALLAEEQAREARARAASGIYVSM 151
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: D7FJF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF8_ECTSI) HSP 1 Score: 129 bits (325), Expect = 2.280e-31 Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 2
Query: 116 SLFAGSICVAKRXXXXXXXXXXXXXXXXXXRRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTKRRSIHVVKAPVDHALLEAQKMENEAREARIRAASGIYAKL 499
+LFAG+ CV XXXXXXXXXXXXXXXXXX LGVKKFGGE V+AGNII+RQRGTQF+PGK VGMGKDHT+F++ G V+F R FTKRR++ V+KA VD + A E +AREAR RAASGIY +
Sbjct: 122 ALFAGTTCVXXXXXXXXXXXXXXXXXXXXXXXLGVKKFGGENVVAGNIIIRQRGTQFYPGKGVGMGKDHTLFAMYPGFVVFSRSPFTKRRTVSVMKAKVDTEAVAALLAEEQAREARARAASGIYVSM 249
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: E0UQT2_SULAO (50S ribosomal protein L27 n=9 Tax=root TaxID=1 RepID=E0UQT2_SULAO) HSP 1 Score: 96.3 bits (238), Expect = 6.600e-21 Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTKRRSIHVVKA 406
RRLGVKKFGGEAVIAGNII+RQRGT+ HPGKNVGMGKDHT+F+LV G V F+R + KR+ + ++ A
Sbjct: 19 RRLGVKKFGGEAVIAGNIIIRQRGTKVHPGKNVGMGKDHTIFALVDGIVAFER-KDKKRQQVSIIPA 84
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: A0A2D7TDH5_9PROT (50S ribosomal protein L27 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D7TDH5_9PROT) HSP 1 Score: 95.5 bits (236), Expect = 1.410e-20 Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTK 379
RRLGVKKFG EAV+AGNII+RQRGT++HPG NVGMGKDHT+FSL+ GHV FK + K
Sbjct: 19 RRLGVKKFGSEAVVAGNIIIRQRGTKYHPGSNVGMGKDHTIFSLIDGHVKFKEHKGKK 76
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: A0A2E3XGZ2_9PROT (50S ribosomal protein L27 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XGZ2_9PROT) HSP 1 Score: 94.7 bits (234), Expect = 2.420e-20 Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDR 370
RRLGVKK+GGE VI GNII+RQRGT+FHPG+NVGMGKDHT+F+L+ GHV F R R
Sbjct: 19 RRLGVKKYGGEVVIPGNIIIRQRGTKFHPGENVGMGKDHTIFALIEGHVSFSRGR 73
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: A0A7N0SZT4_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0SZT4_KALFE) HSP 1 Score: 97.1 bits (240), Expect = 3.670e-20 Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTKRRSIHVV--KAPVDHALLEAQKMENEA 454
+ LGVKKFGGE VI GNII+RQRGT+FHPG VGMGKDHT+F+LV G V F+ ++ TKR+ IHV + P H + A N+A
Sbjct: 84 KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLFALVEGRVKFETNKLTKRKWIHVEPKEGPTLHPIYTASAAANQA 168
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: A0A6B8KIL0_9HYPH (50S ribosomal protein L27 n=1 Tax=Methylocystis heyeri TaxID=391905 RepID=A0A6B8KIL0_9HYPH) HSP 1 Score: 94.0 bits (232), Expect = 4.880e-20 Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTKRRSIHVVKA 406
RRLGVKKFGGE+VI GNII+RQRGT++HPG NVGMGKDHT+F+LV G VLFK R R S+ VV A
Sbjct: 19 RRLGVKKFGGESVIGGNIIVRQRGTKWHPGDNVGMGKDHTLFALVEGKVLFKSTR--GRSSVSVVPA 83
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: A0A2E5J5L1_9RICK (50S ribosomal protein L27 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E5J5L1_9RICK) HSP 1 Score: 93.6 bits (231), Expect = 6.560e-20 Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKR 364
RRLGVKKFGGEAV+ GNII+RQRGT++HPGKNVG+GKDHT+FSL G+VLFK+
Sbjct: 19 RRLGVKKFGGEAVLPGNIIIRQRGTKYHPGKNVGIGKDHTIFSLEKGNVLFKK 71
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: UPI00190800A6 (50S ribosomal protein L27 n=2 Tax=Roseibacillus TaxID=518755 RepID=UPI00190800A6) HSP 1 Score: 93.6 bits (231), Expect = 6.940e-20 Identity = 42/54 (77.78%), Postives = 51/54 (94.44%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRD 367
+RLGVKKFGGEAVIAGNII+RQRGT++HPGKN+GMGKDHT+F+LV G+V F R+
Sbjct: 19 KRLGVKKFGGEAVIAGNIIVRQRGTKWHPGKNIGMGKDHTLFALVDGNVYFDRE 72
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Match: G2KRH3_MICAA (50S ribosomal protein L27 n=2 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=G2KRH3_MICAA) HSP 1 Score: 93.6 bits (231), Expect = 8.210e-20 Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 2
Query: 206 RRLGVKKFGGEAVIAGNIIMRQRGTQFHPGKNVGMGKDHTVFSLVTGHVLFKRDRFTKRRSIHVVKA 406
RRLGVK++GGE V+AGNII+RQRGT++ PGKNVGMGKDHT+F+LV G VLF R T RR +++V A
Sbjct: 19 RRLGVKRYGGEEVLAGNIIVRQRGTEYFPGKNVGMGKDHTLFALVDGEVLFSHGR-TGRRMVNIVPA 84 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1635.3635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1635.3635.1 >prot_H-paniculata_contig1635.3635.1 ID=prot_H-paniculata_contig1635.3635.1|Name=mRNA_H-paniculata_contig1635.3635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp MFSALMAAAVRQCSPATALAAIPSTSVSLFAGSICVAKRCASKAAAGSTTback to top mRNA from alignment at H-paniculata_contig1635:12142..14948- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1635.3635.1 ID=mRNA_H-paniculata_contig1635.3635.1|Name=mRNA_H-paniculata_contig1635.3635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2807bp|location=Sequence derived from alignment at H-paniculata_contig1635:12142..14948- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1635:12142..14948- >mRNA_H-paniculata_contig1635.3635.1 ID=mRNA_H-paniculata_contig1635.3635.1|Name=mRNA_H-paniculata_contig1635.3635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig1635:12142..14948- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |