mRNA_H-paniculata_contig1616.3549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1616.3549.1
Unique NamemRNA_H-paniculata_contig1616.3549.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1616.3549.1 vs. uniprot
Match: D7FHU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.280e-24
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    4 VHTLRGVSTHALVPELALERVACSLDCRGLNRDPCWLEDNKCGECSEGFVGKAGHVNSLC 183
            VH LR VSTHA VPELALE++AC++DC GLNRD CWLE NKCGEC +GF GKAGHVNS C
Sbjct:  456 VHELRPVSTHAPVPELALEKIACAVDCPGLNRDACWLEANKCGECVDGFDGKAGHVNSPC 515
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1616.3549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHU9_ECTSI1.280e-2476.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1616contigH-paniculata_contig1616:1939..2121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue5.7e-20
Seed eggNOG ortholog2880.D7FHU9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs2CBYM@1,2QPWV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929290.7401273-CDS-H-paniculata_contig1616:1938..21211622929290.7401273-CDS-H-paniculata_contig1616:1938..2121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1616 1939..2121 -
1691480803.1290705-CDS-H-paniculata_contig1616:1938..21211691480803.1290705-CDS-H-paniculata_contig1616:1938..2121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1616 1939..2121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1616.3549.1prot_H-paniculata_contig1616.3549.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1616 1939..2121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1616.3549.1

>prot_H-paniculata_contig1616.3549.1 ID=prot_H-paniculata_contig1616.3549.1|Name=mRNA_H-paniculata_contig1616.3549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
LVHTLRGVSTHALVPELALERVACSLDCRGLNRDPCWLEDNKCGECSEGF
VGKAGHVNSLC
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mRNA from alignment at H-paniculata_contig1616:1939..2121-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1616.3549.1 ID=mRNA_H-paniculata_contig1616.3549.1|Name=mRNA_H-paniculata_contig1616.3549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig1616:1939..2121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTACATACGTTGAGGGGGGTGAGTACGCATGCTCTTGTTCCGGAATT
AGCGTTGGAGCGAGTGGCTTGTTCACTCGACTGCCGCGGATTGAATCGCG
ACCCTTGTTGGCTGGAAGATAACAAGTGCGGGGAGTGTTCGGAAGGGTTT
GTCGGGAAGGCGGGTCACGTCAACAGTCTGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1616:1939..2121-

>mRNA_H-paniculata_contig1616.3549.1 ID=mRNA_H-paniculata_contig1616.3549.1|Name=mRNA_H-paniculata_contig1616.3549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1616:1939..2121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTACATACGTTGAGGGGGGTGAGTACGCATGCTCTTGTTCCGGAATT
AGCGTTGGAGCGAGTGGCTTGTTCACTCGACTGCCGCGGATTGAATCGCG
ACCCTTGTTGGCTGGAAGATAACAAGTGCGGGGAGTGTTCGGAAGGGTTT
GTCGGGAAGGCGGGTCACGTCAACAGTCTGTGCCTGGTACATACGTTGAG
GGGGGTGAGTACGCATGCTCTTGTTCCGGAATTAGCGTTGGAGCGAGTGG
CTTGTTCACTCGACTGCCGCGGATTGAATCGCGACCCTTGTTGGCTGGAA
GATAACAAGTGCGGGGAGTGTTCGGAAGGGTTTGTCGGGAAGGCGGGTCA
CGTCAACAGTCTGTGC
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