mRNA_H-paniculata_contig15231.3083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15231.3083.1
Unique NamemRNA_H-paniculata_contig15231.3083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0K175_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K175_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 1.530e-145
Identity = 197/236 (83.47%), Postives = 219/236 (92.80%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            MKFKSRYKSCLW+RKDVWG LLKKK+TFLRVKWDRMMAILSSQ+RR+ GK  CKDY +VKPS+R NQVYN+VRWGFRNSL NRLCARRFYGD+SHKSFRKLCKV++  +L Q LESRLDINL RLEFF+SIY SRQAILHGKILVNNKKVTFGHF LKFGD++EFCPSFRPF++DYL  RSK+R++SDRLI+LS+RWVLCDYSNLFFIING IKPFLFYPYRF+LDELISFANYGY
Sbjct:    1 MKFKSRYKSCLWARKDVWGNLLKKKHTFLRVKWDRMMAILSSQRRRRRGKP-CKDYGIVKPSSRSNQVYNYVRWGFRNSLGNRLCARRFYGDVSHKSFRKLCKVDSVRELAQVLESRLDINLCRLEFFSSIYCSRQAILHGKILVNNKKVTFGHFLLKFGDIVEFCPSFRPFMHDYLVYRSKFRYRSDRLIRLSSRWVLCDYSNLFFIINGSIKPFLFYPYRFELDELISFANYGY 235          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A4Y5T8N1_9PHAE (Ribosomal protein S4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8N1_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.270e-81
Identity = 125/237 (52.74%), Postives = 168/237 (70.89%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRL-IKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            MKFK+RYKSCLWS+ D+WG LLK++N+FLRVKWDR++  L S++RR+  ++LCKDY LVKPS+RPNQ Y   RW FRNSLSNRLC RRFYGD+S K+ ++LC++    +  ++LESRLDINLYRL F  S+Y S+QAILHGK+LVN +K+TF  F L+ GD++EF  +FR  +   +  R       DRL +  +  W+  DY +L FI  G I   +FYP+R + DE+   + Y Y
Sbjct:    1 MKFKARYKSCLWSKTDIWGGLLKRRNSFLRVKWDRIIGTLISKKRRR-HQRLCKDYRLVKPSSRPNQPYKFPRWAFRNSLSNRLCLRRFYGDLSSKTVQRLCRIKKNKKFIRSLESRLDINLYRLGFLGSVYESKQAILHGKVLVNGRKITFDQFLLQSGDIVEFSSNFRSSIRSGILSRRCGINYVDRLRVHPTPDWLHTDYCSLSFIFVGDITFSMFYPFRVEFDEIRCSSRYKY 236          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: Q2TUD0_DICDH (Ribosomal protein S4 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUD0_DICDH)

HSP 1 Score: 252 bits (643), Expect = 2.640e-81
Identity = 126/238 (52.94%), Postives = 167/238 (70.17%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLC-KVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRL-IKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            MKFKS YKSC WS+ D+WG LLKKKN+FL VKWDR++ +LSS++RR+  +KLCK+Y+LV P++RPNQ Y + RW F+NSLSN +C RRFYGD+  +  + +C K        + LESRL INLYRL FF+S++ S+QAILHGK+LVN  K+TF H+ LK GD+IEFCP FR  +   +  R K    SDRL +  +  W+  DYSNL FII       +FYP+R D DE+++ + Y Y
Sbjct:    1 MKFKSIYKSCFWSKTDIWGCLLKKKNSFLHVKWDRILGVLSSRKRRRY-QKLCKNYNLVGPTSRPNQPYKYPRWYFKNSLSNGVCVRRFYGDLRFEMLKSMCNKAKTVDSFMKCLESRLGINLYRLGFFSSVFESKQAILHGKVLVNGVKITFDHYILKPGDLIEFCPKFRSKLKSRMITRRKNINYSDRLKLNPTPFWIQTDYSNLSFIILCETNNAVFYPFRIDFDEVLNSSKYRY 237          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0FC93_9PHAE (Ribosomal protein S4 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FC93_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.520e-74
Identity = 125/264 (47.35%), Postives = 164/264 (62.12%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKVNNTGQ-----LCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK RYKSCLW+R D+WG LL K+ TFLR KWD ++ +LSSQ+RR        +    LC DY+ +KP  RPNQ++ + R  +RN+LS  +C +RFYGD+S K+F+  CK   +G+     L + LE RLDI LYRL FF SIY SRQAILH ++LVN KK+ +G F L+ GD +EFCPS               FR F     R R   RFK D  +  + +W+  DYSNL F I+  + P +FYP+R DLDE I  + YGY
Sbjct:    1 MRFKHRYKSCLWARTDIWGDLLSKEKTFLRPKWDSIIGVLSSQKRRHRPLTNINRYRYPLCHDYNFLKPRVRPNQIFKYNRVSYRNTLSLLMCVKRFYGDLSTKTFKIFCKRLGSGKIPSKKLIEVLEGRLDICLYRLGFFHSIYYSRQAILHSQVLVNGKKIDYGGFILQKGDYVEFCPSQRNAIRVRLVARYKRFRSFYIKLERWRLSNRFKFDLHLHPTPKWIHTDYSNLSFFISADVCPPIFYPFRVDLDEAIWASKYGY 264          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0K0K8_9PHAE (Ribosomal protein S4 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0K8_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 7.040e-73
Identity = 126/264 (47.73%), Postives = 163/264 (61.74%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRP-----FVYDYLRQRSKY----------RFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK RYKSCLWSR D+WG LL K  TFLR KWD ++ +LSSQ+RR        +    LC DY+ +KP  RPNQ++ + R  +RN+LS  LC RRFYGD++HK+F+  CK      N   +L   LE RLD++LYRL FF SIY SRQAILH K+LVN K++  G F L+ GD +EFCPS R       V  Y R RS Y          RFK D  +  + +WV  DYSNL FI++  +   + YP+R D+DE +  + YGY
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKDKTFLRPKWDSIIGVLSSQKRRHRPLANINRYRYPLCHDYNFLKPRVRPNQIFKYNRISYRNTLSLLLCIRRFYGDLNHKAFKNFCKSLVSLKNPPQKLIGALEGRLDVSLYRLGFFHSIYYSRQAILHSKVLVNGKRIGHGGFILQKGDFVEFCPSQRSSIRARLVGRYKRFRSSYVKLERWRLSNRFKFDLHLHPTPKWVQTDYSNLSFIMSSDVCVPVIYPFRVDVDEALWCSKYGY 264          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A516ICH2_9PHAE (Ribosomal protein S4 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICH2_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.410e-72
Identity = 119/264 (45.08%), Postives = 166/264 (62.88%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCK-----VNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK RYKSCLWS+ D+WG LL K+ TFLR KWD ++ +L SQ+RR        +    LC DY+ +KP  RPNQ++ + + G++N+L+  LC RRFYGD+SHK F++ C+      + + +L ++LE RLDI+LYRL FF SIY SRQAILH K+LVN KK+ +G F L+ GD IEFCPS               FR F     R R   RFK +  ++ +  W+  DYSNL F+++  +   + YP+R D+DE +  + YGY
Sbjct:    1 MRFKHRYKSCLWSKTDIWGDLLSKEKTFLRPKWDNIIGVLESQKRRHRPLANINRYRHPLCHDYNFLKPRVRPNQIFKYNKVGYKNTLAILLCVRRFYGDLSHKGFKRFCQPLVAFTDPSQKLIKSLERRLDISLYRLGFFHSIYYSRQAILHNKVLVNGKKIGYGGFILQKGDFIEFCPSQRSAIKTRLMARYKRFRSFHVKLERWRLSNRFKFELHLQPTPTWIQTDYSNLSFMLSSDVCVPVLYPFRVDIDEALWASKYGY 264          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: W5RG02_COSCS (Ribosomal protein S4 n=9 Tax=Laminariales TaxID=2886 RepID=W5RG02_COSCS)

HSP 1 Score: 231 bits (588), Expect = 1.410e-72
Identity = 123/264 (46.59%), Postives = 163/264 (61.74%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK RYKSCLWSR D+WG LL K+ TFLR KWD ++ +L SQ+RR        +    LC DY+ VKP  RPNQ++ + R  +RN+LS  LC RRFYGD+SHK+F++ C+          +L  +LE RLDI+LYRL FF SIY SRQAILH K+LVN +K+ +G F L+ GD +EFCPS               FR F     R R   RFK +  +  + +WV  DYSNL FI++  I   + YP+R D+DE +  + YG+
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFVKPRVRPNQIFKYNRLSYRNTLSLLLCIRRFYGDLSHKAFKRFCQPLVSLKTPAQKLIGSLEGRLDISLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGGFILQKGDFVEFCPSQRSAIRARLVARYKRFRSFHVKLERWRLSNRFKFELYLYPTPKWVQTDYSNLSFILSSDICAPVMYPFRVDVDEALWASRYGH 264          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0JZU7_9PHAE (Ribosomal protein S4 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0JZU7_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 2.000e-72
Identity = 123/264 (46.59%), Postives = 162/264 (61.36%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK +YKSCLW R D+WG LL K+ TFLR KWD ++ +L SQ+RR        +    LC DY+ VKP  RPNQ++ + R  +RN+LS  LC RRFYGD+SHK+F+K C+      N T  L  +LE RLDI+LYRL FF SIY SRQAILH K+LVN KK+  G F L+ GD +EFC S               FR F     R R   RFK +  ++ + +W+  DYSNL FI++  +   + YP+R D+DE +  + YGY
Sbjct:    1 MRFKHKYKSCLWLRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFVKPRVRPNQIFKYNRISYRNTLSLLLCIRRFYGDLSHKAFKKFCRPLVSLKNPTKNLIGSLEGRLDISLYRLGFFHSIYYSRQAILHNKVLVNGKKIADGGFILQKGDYVEFCFSQRSAIRARLVARYKRFRSFYVKLERWRLSNRFKFELHLQPTPKWIQTDYSNLSFILSSNVCAPVIYPFRVDIDEALWASKYGY 264          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A3G5FPT6_9PHAE (Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPT6_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 9.250e-71
Identity = 120/264 (45.45%), Postives = 170/264 (64.39%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRP-----FVYDYLRQRSK----------YRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK+RYKSCLWSR ++WG LL K++TFLR KWD ++AIL SQ+RR        +    +C +Y L+KP TR NQV+ + R+G+RN+LS   C RRFYGD+SHK F+  CK      + + +L  +LE RLD++LYRL FF SIY SRQAILH K+LVN +K+ +G F L+ GD++EFCP+ R       V  Y R RS           +R+K +  ++ + +W+  DYSNL FI++  +   + YP+R + DE +  + YGY
Sbjct:    1 MRFKNRYKSCLWSRTNIWGDLLAKEHTFLRPKWDTIIAILRSQRRRHRPLVNIYRYRHPICHNYKLLKPRTRANQVFKYNRFGYRNTLSLVFCLRRFYGDLSHKGFKNFCKPFFKLRDPSQRLLSSLEGRLDMSLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGSFILQKGDLVEFCPTQRSAIRARLVARYKRFRSSMVRLERSNLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPIVYPFRANFDEALWASKYGY 264          
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0FCX2_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX2_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 9.250e-71
Identity = 121/264 (45.83%), Postives = 163/264 (61.74%), Query Frame = 1
Query:    1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKY---------------RFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708
            M+FK RYKSCLWSR D+WG LL K+ TFLR KWD +M IL SQ+RR        +    LC DY  +KP  R NQ++ + R G+RN+LS   C RRFYGD+SHKSF+K C+      + + +L   LE RLDI LYRL FF SI+ SRQAILH K+LVN +K+ +G F L+ GD +EFCP  RP +   L  R K+               RFK +  ++ + +W+  DYSNL FI++  +   + +P+R D+DE +  + YGY
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLGKEKTFLRPKWDTIMGILGSQKRRHRPLVNINRYRYPLCHDYKFLKPRARANQIFKYNRRGYRNTLSLLFCLRRFYGDLSHKSFKKFCRSMFALKDPSQKLLGALEGRLDITLYRLGFFHSIFYSRQAILHHKVLVNGEKIGYGGFILQKGDYVEFCPLQRPAIRARLLARYKHFRSAEVRLERWRLSPRFKYELHLQPTPKWIHTDYSNLSFILSSEVCVPIMFPFRADVDEALWASKYGY 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K175_9PHAE1.530e-14583.47Ribosomal protein S4 n=1 Tax=Protohalopteris sp. T... [more]
A0A4Y5T8N1_9PHAE1.270e-8152.74Ribosomal protein S4 n=1 Tax=Dictyopteris divarica... [more]
Q2TUD0_DICDH2.640e-8152.94Ribosomal protein S4 n=1 Tax=Dictyota dichotoma Ta... [more]
A0A8F0FC93_9PHAE1.520e-7447.35Ribosomal protein S4 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0K0K8_9PHAE7.040e-7347.73Ribosomal protein S4 n=3 Tax=Laminariales TaxID=28... [more]
A0A516ICH2_9PHAE1.410e-7245.08Ribosomal protein S4 n=3 Tax=Lessonia TaxID=105411... [more]
W5RG02_COSCS1.410e-7246.59Ribosomal protein S4 n=9 Tax=Laminariales TaxID=28... [more]
A0A8F0JZU7_9PHAE2.000e-7246.59Ribosomal protein S4 n=1 Tax=Dictyoneurum californ... [more]
A0A3G5FPT6_9PHAE9.250e-7145.45Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranu... [more]
A0A8F0FCX2_9PHAE9.250e-7145.83Ribosomal protein S4 n=2 Tax=Laminariales TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15231contigH-paniculata_contig15231:5455..6165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.6
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog1528106.JRJE01000029_gene330
Preferred namerpsD
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
EggNOG free text desc.One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
EggNOG OGs1MW0U@1224,2JPBZ@204441,2TRQH@28211,COG0522@1,COG0522@2
COG Functional cat.J
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size711
Cds size711
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.718264-CDS-H-paniculata_contig15231:5454..61651622929220.718264-CDS-H-paniculata_contig15231:5454..6165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15231 5455..6165 -
1691480775.755596-CDS-H-paniculata_contig15231:5454..61651691480775.755596-CDS-H-paniculata_contig15231:5454..6165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15231 5455..6165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15231.3083.1prot_H-paniculata_contig15231.3083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15231 5455..6165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15231.3083.1

>prot_H-paniculata_contig15231.3083.1 ID=prot_H-paniculata_contig15231.3083.1|Name=mRNA_H-paniculata_contig15231.3083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGK
KLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRK
LCKVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKV
TFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRLIKLSARWVLC
DYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY*
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mRNA from alignment at H-paniculata_contig15231:5455..6165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15231.3083.1 ID=mRNA_H-paniculata_contig15231.3083.1|Name=mRNA_H-paniculata_contig15231.3083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=711bp|location=Sequence derived from alignment at H-paniculata_contig15231:5455..6165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTTAAATCTAGATACAAATCTTGTTTATGGTCGCGTAAAGATGT TTGGGGTACGCTTTTAAAAAAAAAAAATACTTTTTTACGGGTTAAGTGGG ATCGTATGATGGCTATACTATCTAGTCAACAGAGACGTAAAATAGGCAAA AAATTATGTAAAGATTATAGTTTAGTAAAACCATCAACACGTCCTAACCA AGTTTACAATCACGTTCGTTGGGGATTTCGAAATTCTTTAAGTAATCGAC TTTGTGCTAGACGATTTTATGGGGATATAAGCCATAAGTCTTTTCGTAAA CTTTGCAAAGTAAATAATACTGGGCAATTATGTCAAACACTTGAAAGTCG TTTAGATATAAATTTGTATCGACTAGAATTTTTTACTTCAATTTATTCTA GTCGGCAGGCTATTCTTCATGGAAAAATTTTGGTAAATAATAAAAAAGTT ACTTTTGGTCATTTTTTCTTAAAATTTGGTGATGTTATAGAGTTTTGCCC ATCGTTTCGTCCTTTTGTTTATGATTATCTTAGGCAACGGAGTAAATACC GTTTTAAAAGTGATCGTTTAATAAAATTATCAGCAAGATGGGTTTTATGT GACTATTCTAATTTATTTTTTATAATTAATGGCCCTATAAAGCCATTTTT ATTTTATCCTTATCGTTTTGATTTAGATGAGCTTATTTCATTCGCTAATT ATGGATATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15231:5455..6165-

>mRNA_H-paniculata_contig15231.3083.1 ID=mRNA_H-paniculata_contig15231.3083.1|Name=mRNA_H-paniculata_contig15231.3083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig15231:5455..6165- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTTAAATCTAGATACAAATCTTGTTTATGGTCGCGTAAAGATGT
TTGGGGTACGCTTTTAAAAAAAAAAAATACTTTTTTACGGGTTAAGTGGG
ATCGTATGATGGCTATACTATCTAGTCAACAGAGACGTAAAATAGGCAAA
AAATTATGTAAAGATTATAGTTTAGTAAAACCATCAACACGTCCTAACCA
AGTTTACAATCACGTTCGTTGGGGATTTCGAAATTCTTTAAGTAATCGAC
TTTGTGCTAGACGATTTTATGGGGATATAAGCCATAAGTCTTTTCGTAAA
CTTTGCAAAGTAAATAATACTGGGCAATTATGTCAAACACTTGAAAGTCG
TTTAGATATAAATTTGTATCGACTAGAATTTTTTACTTCAATTTATTCTA
GTCGGCAGGCTATTCTTCATGGAAAAATTTTGGTAAATAATAAAAAAGTT
ACTTTTGGTCATTTTTTCTTAAAATTTGGTGATGTTATAGAGTTTTGCCC
ATCGTTTCGTCCTTTTGTTTATGATTATCTTAGGCAACGGAGTAAATACC
GTTTTAAAAGTGATCGTTTAATAAAATTATCAGCAAGATGGGTTTTATGT
GACTATTCTAATTTATTTTTTATAATTAATGGCCCTATAAAGCCATTTTT
ATTTTATCCTTATCGTTTTGATTTAGATGAGCTTATTTCATTCGCTAATT
ATGGATATTAAATGAAATTTAAATCTAGATACAAATCTTGTTTATGGTCG
CGTAAAGATGTTTGGGGTACGCTTTTAAAAAAAAAAAATACTTTTTTACG
GGTTAAGTGGGATCGTATGATGGCTATACTATCTAGTCAACAGAGACGTA
AAATAGGCAAAAAATTATGTAAAGATTATAGTTTAGTAAAACCATCAACA
CGTCCTAACCAAGTTTACAATCACGTTCGTTGGGGATTTCGAAATTCTTT
AAGTAATCGACTTTGTGCTAGACGATTTTATGGGGATATAAGCCATAAGT
CTTTTCGTAAACTTTGCAAAGTAAATAATACTGGGCAATTATGTCAAACA
CTTGAAAGTCGTTTAGATATAAATTTGTATCGACTAGAATTTTTTACTTC
AATTTATTCTAGTCGGCAGGCTATTCTTCATGGAAAAATTTTGGTAAATA
ATAAAAAAGTTACTTTTGGTCATTTTTTCTTAAAATTTGGTGATGTTATA
GAGTTTTGCCCATCGTTTCGTCCTTTTGTTTATGATTATCTTAGGCAACG
GAGTAAATACCGTTTTAAAAGTGATCGTTTAATAAAATTATCAGCAAGAT
GGGTTTTATGTGACTATTCTAATTTATTTTTTATAATTAATGGCCCTATA
AAGCCATTTTTATTTTATCCTTATCGTTTTGATTTAGATGAGCTTATTTC
ATTCGCTAATTATGGATATTAA
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