mRNA_H-paniculata_contig15129.3034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15129.3034.1
Unique NamemRNA_H-paniculata_contig15129.3034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: A0A6H5K466_9PHAE (Adaptin_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K466_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.660e-41
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAAL CYY+HKNFGQQ+
Sbjct:  100 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALLCYYVHKNFGQQL 169
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 3.340e-40
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAAL CYY+HKNFGQQ+
Sbjct:  100 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALLCYYVHKNFGQQL 169
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.460e-31
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEH----RHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNHPNEYVRG TLRFLC+LREPELLEPLIPTVK CL+     RH YVR+NAAL+CYYIHKNF + +
Sbjct:  101 VCNALRNDLNHPNEYVRGATLRFLCRLREPELLEPLIPTVKACLDGNGLGRHPYVRKNAALACYYIHKNFAETL 174
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: A0A7S3JQR7_9STRA (Coatomer subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQR7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.990e-31
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNH NEYVRGC LRFLCKLR+ E++EPL+P++KLCLEHRHSYVR+NAAL+ Y+IHK +GQ +
Sbjct:  101 VCNALRNDLNHSNEYVRGCMLRFLCKLRQAEIIEPLVPSIKLCLEHRHSYVRKNAALAIYHIHKYYGQNL 170
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: F0YIR7_AURAN (Coatomer subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIR7_AURAN)

HSP 1 Score: 120 bits (300), Expect = 8.280e-30
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNH NEYVRG  LRFLCKLREPE++EPL+P++K CL HRHSYVR+NAAL+ Y+IHK+ GQ +
Sbjct:  100 VCNALRNDLNHSNEYVRGSMLRFLCKLREPEIIEPLVPSIKSCLNHRHSYVRKNAALAIYHIHKHHGQTL 169
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: A0A7S0LEQ4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LEQ4_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 2.560e-29
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCN LRNDLNHPNEY+RGCTLRFLCKL+EPE+LEPLIPT+K  LEHRHS+VRRNA LS + I+K+F   +
Sbjct:  100 VCNNLRNDLNHPNEYIRGCTLRFLCKLKEPEILEPLIPTIKANLEHRHSFVRRNAVLSVFSIYKSFDYLI 169
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: A0A7S4E6E8_9STRA (Coatomer subunit beta n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6E8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.880e-29
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNH NEYVRG  LRFLCKLREPE++EPL+P++K CL HRHSYVR+NAAL+ Y+IHK+ G  +
Sbjct:  100 VCNALRNDLNHSNEYVRGSMLRFLCKLREPEIIEPLVPSIKACLNHRHSYVRKNAALAIYHIHKHHGSAL 169
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: A0A8J5CRB5_CHIOP (Coatomer subunit beta n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CRB5_CHIOP)

HSP 1 Score: 111 bits (278), Expect = 4.520e-29
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNF 225
            VC+A R DL+HPNE++RG TLRFLCKL+EPELLEPL+PT++ CLEHRHSYVRRNA L+ + I+KNF
Sbjct:   42 VCDAYRKDLSHPNEFIRGSTLRFLCKLKEPELLEPLMPTIRTCLEHRHSYVRRNAVLAIFTIYKNF 107
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: U9SY22_RHIID (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9SY22_RHIID)

HSP 1 Score: 113 bits (282), Expect = 6.100e-29
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNF 225
            VCNALRNDL HPNEY+RG TLRFLCKLREPELLEPL+P+ + CLEHRH+YVR+NA  + Y I+K+F
Sbjct:   99 VCNALRNDLQHPNEYIRGATLRFLCKLREPELLEPLLPSCRSCLEHRHAYVRKNAVFAIYTIYKHF 164
[Close]
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Match: W7TX10_9STRA (Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX10_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.360e-28
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   28 VCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLCLEHRHSYVRRNAALSCYYIHKNFGQQV 237
            VCNALRNDLNHPNEYVRG  LRFLCKLREP+LLEPLIP++K CLEHRHSYVR+NAAL+   IH++    +
Sbjct:  109 VCNALRNDLNHPNEYVRGSMLRFLCKLREPDLLEPLIPSIKACLEHRHSYVRKNAALAILNIHRHVSSDL 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15129.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K466_9PHAE4.660e-4195.71Adaptin_N domain-containing protein n=1 Tax=Ectoca... [more]
D7G7C5_ECTSI3.340e-4095.71Coatomer subunit beta n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z7E2_9STRA1.460e-3178.38Coatomer subunit beta n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3JQR7_9STRA1.990e-3175.71Coatomer subunit beta n=1 Tax=Aureoumbra lagunensi... [more]
F0YIR7_AURAN8.280e-3074.29Coatomer subunit beta n=1 Tax=Aureococcus anophage... [more]
A0A7S0LEQ4_9EUKA2.560e-2974.29Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S4E6E8_9STRA2.880e-2972.86Coatomer subunit beta n=3 Tax=Pelagomonas calceola... [more]
A0A8J5CRB5_CHIOP4.520e-2972.73Coatomer subunit beta n=1 Tax=Chionoecetes opilio ... [more]
U9SY22_RHIID6.100e-2974.24Adaptin_N domain-containing protein (Fragment) n=1... [more]
W7TX10_9STRA1.360e-2874.29Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15129contigH-paniculata_contig15129:5044..6033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue8.8e-34
Seed eggNOG ortholog2880.D7G7C5
Preferred nameCOPB1
KEGG koko:K17301
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030667,GO:0030903,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034613,GO:0036230,GO:0042119,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048475,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060429,GO:0061053,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0101002,GO:0101003,GO:1905952
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1058@2759
Ec32 ortholog descriptionCoatomer protein complex, beta sub-unit Vesicle coat complex COPI, beta subunit
Ec32 orthologEc-04_003320.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size240
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15129.3034.1prot_H-paniculata_contig15129.3034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15129 5044..6027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.9237137-CDS-H-paniculata_contig15129:5043..51331622929212.9237137-CDS-H-paniculata_contig15129:5043..5133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15129 5044..5133 -
1691480772.6254265-CDS-H-paniculata_contig15129:5043..51331691480772.6254265-CDS-H-paniculata_contig15129:5043..5133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15129 5044..5133 -
1622929212.938232-CDS-H-paniculata_contig15129:5883..60271622929212.938232-CDS-H-paniculata_contig15129:5883..6027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15129 5884..6027 -
1691480772.6359324-CDS-H-paniculata_contig15129:5883..60271691480772.6359324-CDS-H-paniculata_contig15129:5883..6027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15129 5884..6027 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.9637623-UTR-H-paniculata_contig15129:6027..60331622929212.9637623-UTR-H-paniculata_contig15129:6027..6033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15129 6028..6033 -
1691480772.6439624-UTR-H-paniculata_contig15129:6027..60331691480772.6439624-UTR-H-paniculata_contig15129:6027..6033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15129 6028..6033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15129.3034.1

>prot_H-paniculata_contig15129.3034.1 ID=prot_H-paniculata_contig15129.3034.1|Name=mRNA_H-paniculata_contig15129.3034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MVVAAGQVCNALRNDLNHPNEYVRGCTLRFLCKLREPELLEPLIPTVKLC
LEHRHSYVRRNAALSCYYIHKNFGQQV*
back to top

mRNA from alignment at H-paniculata_contig15129:5044..6033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15129.3034.1 ID=mRNA_H-paniculata_contig15129.3034.1|Name=mRNA_H-paniculata_contig15129.3034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at H-paniculata_contig15129:5044..6033- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAAATGGTGGTGGCTGCGGGGCAGGTGTGCAATGCCCTGCGTAATGA
TCTGAACCACCCCAACGAGTACGTCCGGGGGTGCACGTTGCGGTTCCTGT
GTAAACTTCGAGAGCCGGAGCTGTTGGAGCCTTTGATCCCTACGGTGAAG
GTGCGTAACACTCCCAAAAGTTTGTTTTTTTCTGTGTACGGGCGCAAATG
GATGGTGATGAGAGCGATCTGTCTATCTACACTTTGGCGGCGAACCCTGT
TTTTATGTCGGGTTATGTTAGGTCTAGGGGGGGGGGGGGGGTTTGTGGAG
GTTATATAGCTGATCTCAATCTGCAGTTTTGTACTATTTATCAGCAAAGT
ATTGAGTAGTACATGGTATACTTTTTTTTATCGTGTTTTTAGCCGTTCCG
AATCATGCAATGTGCACCTTACCTTAGAGGATGTGTGAACGCATGCCAGA
GAATACAGGTTTTTGGTTTTGAGTGTTTTCTTCCACGCCTGTTCGCGAAA
CGGCGTTTTTCAAGACATGTGGTGGATGTATCTTCGATGGAAAAGAAGAA
AAAAAGAGTGCATAGAGTATGGCTGATCGTTGTAGATTGGCCAATATAAT
ACTGGTTCCTGTCTGTGTAGCCCTCGCATTCAAATGTACTTAGCTACTGA
AACGGCGCAGAGCCGAACTTGACGCTGTGTAGAGAGTCGGGAATATCACA
GAGGGTCAAAACGACAATCCCTTGGCCTCTCCCCAGCCCATTGGGGACTT
TGTACTTTGGAAATAGTTTTTTGGCGATATCGATGAAGATACACACATCG
AACTCCTGTTGAAAATCCTCTTTTCGAGCGTTCTACAGGAGTCGCTGCTT
TCACGTAAGTGTGCGGCCACCCCTTCCCCGTTCTATGTCTTTAATAACAG
CTTTGCCTGGAGCATCGACACAGCTACGTCCGGCGCAACGCGGCTTTGTC
CTGCTACTACATACACAAGAACTTTGGTCAGCAGGTATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15129:5044..6033-

>mRNA_H-paniculata_contig15129.3034.1 ID=mRNA_H-paniculata_contig15129.3034.1|Name=mRNA_H-paniculata_contig15129.3034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig15129:5044..6033- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGGCTGCGGGGCAGGTGTGCAATGCCCTGCGTAATGATCTGAA
CCACCCCAACGAGTACGTCCGGGGGTGCACGTTGCGGTTCCTGTGTAAAC
TTCGAGAGCCGGAGCTGTTGGAGCCTTTGATCCCTACGGTGAAGATGGTG
GTGGCTGCGGGGCAGGTGTGCAATGCCCTGCGTAATGATCTGAACCACCC
CAACGAGTACGTCCGGGGGTGCACGTTGCGGTTCCTGTGTAAACTTCGAG
AGCCGGAGCTGTTGGAGCCTTTGATCCCTACGGTGAAGCTTTGCCTGGAG
CATCGACACAGCTACGTCCGGCGCAACGCGGCTTTGTCCTGCTACTACAT
ACACAAGAACTTTGGTCAGCAGGTATGACTTTGCCTGGAGCATCGACACA
GCTACGTCCGGCGCAACGCGGCTTTGTCCTGCTACTACATACACAAGAAC
TTTGGTCAGCAGGTATGA
back to top