mRNA_H-paniculata_contig151.3026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig151.3026.1
Unique NamemRNA_H-paniculata_contig151.3026.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig151.3026.1 vs. uniprot
Match: D7FZS2_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.280e-10
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   34 GKGSNATFVDVVPFYNIRAKYLRPWGDTALSRPHHISAIP----DRTMASP 174
            G G    FVDVVPF NIRAKYLRPW DT LSRP+H++  P    DR + +P
Sbjct:  386 GGGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGTP 436
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BLAST of mRNA_H-paniculata_contig151.3026.1 vs. uniprot
Match: A0A6H5KP45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP45_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-9
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   34 GKGSNATFVDVVPFYNIRAKYLRPWGDTALSRPHHISAIP 153
            G G    FVDVVPF NIRAKYLRPW DT LSRP+H++  P
Sbjct:  204 GIGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSP 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig151.3026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZS2_ECTSI3.280e-1058.82Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP45_9PHAE1.290e-967.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig151contigH-paniculata_contig151:5114..5330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog2880.D7FZS2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_004140.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.2570136-CDS-H-paniculata_contig151:5113..53291622929211.2570136-CDS-H-paniculata_contig151:5113..5329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig151 5114..5329 +
1691480771.878052-CDS-H-paniculata_contig151:5113..53291691480771.878052-CDS-H-paniculata_contig151:5113..5329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig151 5114..5329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig151.3026.1prot_H-paniculata_contig151.3026.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig151 5114..5329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig151.3026.1

>prot_H-paniculata_contig151.3026.1 ID=prot_H-paniculata_contig151.3026.1|Name=mRNA_H-paniculata_contig151.3026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
SGVEHLPSATDGKGSNATFVDVVPFYNIRAKYLRPWGDTALSRPHHISAI
PDRTMASPIRPISKDQSATPAV
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mRNA from alignment at H-paniculata_contig151:5114..5330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig151.3026.1 ID=mRNA_H-paniculata_contig151.3026.1|Name=mRNA_H-paniculata_contig151.3026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=217bp|location=Sequence derived from alignment at H-paniculata_contig151:5114..5330+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGGGTTGAACACCTCCCTAGTGCCACTGATGGAAAGGGTTCCAATGC
GACATTCGTTGATGTGGTACCTTTCTATAACATCCGCGCGAAATACTTGA
GACCCTGGGGCGATACGGCCCTGTCCCGACCTCACCACATCTCCGCTATT
CCGGATAGAACGATGGCTTCACCCATCAGGCCAATAAGTAAAGACCAATC
CGCAACGCCTGCCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig151:5114..5330+

>mRNA_H-paniculata_contig151.3026.1 ID=mRNA_H-paniculata_contig151.3026.1|Name=mRNA_H-paniculata_contig151.3026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig151:5114..5330+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGGGTTGAACACCTCCCTAGTGCCACTGATGGAAAGGGTTCCAATGC
GACATTCGTTGATGTGGTACCTTTCTATAACATCCGCGCGAAATACTTGA
GACCCTGGGGCGATACGGCCCTGTCCCGACCTCACCACATCTCCGCTATT
CCGGATAGAACGATGGCTTCACCCATCAGGCCAATAAGTAAAGACCAATC
CGCAACGCCTGCCGTATCGGGGGTTGAACACCTCCCTAGTGCCACTGATG
GAAAGGGTTCCAATGCGACATTCGTTGATGTGGTACCTTTCTATAACATC
CGCGCGAAATACTTGAGACCCTGGGGCGATACGGCCCTGTCCCGACCTCA
CCACATCTCCGCTATTCCGGATAGAACGATGGCTTCACCCATCAGGCCAA
TAAGTAAAGACCAATCCGCAACGCCTGCCGTA
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