mRNA_H-paniculata_contig14611.2767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A6L2M7G6_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2M7G6_TANCI) HSP 1 Score: 79.0 bits (193), Expect = 6.010e-16 Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 7 GRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201 G K +C WIF+R +K DG+V ++KARLV QGF Q EG D F+T APVAH++T+R + +LA H+ Sbjct: 37 GCKPLCCKWIFKRKMKVDGTVDKFKARLVIQGFRQKEGIDYFDTYAPVAHITTIRLLLALAALHN 101
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A7C9CYH4_OPUST (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CYH4_OPUST) HSP 1 Score: 75.5 bits (184), Expect = 7.600e-16 Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATA 195 P G+KAI + W+F+ LK DGS+ RYKARLV +G +Q EG D ET +PV M+T+RT+ +LA A Sbjct: 66 PAGKKAISSKWVFKIKLKADGSLERYKARLVVRGNTQKEGIDYTETFSPVVKMTTIRTIIALAAA 130
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI) HSP 1 Score: 79.7 bits (195), Expect = 8.550e-16 Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201 P G KA+ W+ ER +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA HD Sbjct: 483 PPGCKALGCKWVLERKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHD 549
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR) HSP 1 Score: 77.8 bits (190), Expect = 1.450e-15 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAH 198 P G K + WIF+R +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA+ H Sbjct: 16 PPGCKPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIH 81
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: I1PI69_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PI69_ORYGL) HSP 1 Score: 78.2 bits (191), Expect = 1.610e-15 Identity = 32/66 (48.48%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAH 198 P G K + W+F++ L+ DG++ +YKARLVA+G++Q EG+D F+T +PVA ++T+R + SLAT+H Sbjct: 222 PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQNEGEDFFDTYSPVARLTTVRVLLSLATSH 287
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A6L2J1U0_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2J1U0_TANCI) HSP 1 Score: 78.6 bits (192), Expect = 2.180e-15 Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201 P G KA+ WI +R +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA HD Sbjct: 655 PPGCKALGCKWIIKRKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHD 721
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI) HSP 1 Score: 78.6 bits (192), Expect = 2.190e-15 Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLA 189 P GRKAI + W+++ L EDG R+KARLVAQGF+QV G D FET APVA + +LR + +LA Sbjct: 671 PAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALA 733
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI) HSP 1 Score: 78.6 bits (192), Expect = 2.190e-15 Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLA 189 P GRKAI + W+++ L EDG R+KARLVAQGF+QV G D FET APVA + +LR + +LA Sbjct: 672 PAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALA 734
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI) HSP 1 Score: 78.2 bits (191), Expect = 2.900e-15 Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201 P G KA+ WI +R +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA HD Sbjct: 12 PPGCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHD 78
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A392R7E7_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R7E7_9FABA) HSP 1 Score: 74.3 bits (181), Expect = 3.140e-15 Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201 PV +KAI W+F+ L DGSVA+YKARL+A+GF Q EG D E +PVA + T+R V ++A A D Sbjct: 62 PVDKKAIAVKWVFKLKLNPDGSVAKYKARLMARGFLQREGLDYSEVYSPVARIETVRLVVAIANARD 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14611.2767.1 >prot_H-paniculata_contig14611.2767.1 ID=prot_H-paniculata_contig14611.2767.1|Name=mRNA_H-paniculata_contig14611.2767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVback to top mRNA from alignment at H-paniculata_contig14611:5602..5811+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14611.2767.1 ID=mRNA_H-paniculata_contig14611.2767.1|Name=mRNA_H-paniculata_contig14611.2767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig14611:5602..5811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14611:5602..5811+ >mRNA_H-paniculata_contig14611.2767.1 ID=mRNA_H-paniculata_contig14611.2767.1|Name=mRNA_H-paniculata_contig14611.2767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig14611:5602..5811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |