mRNA_H-paniculata_contig14611.2767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14611.2767.1
Unique NamemRNA_H-paniculata_contig14611.2767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A6L2M7G6_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2M7G6_TANCI)

HSP 1 Score: 79.0 bits (193), Expect = 6.010e-16
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    7 GRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201
            G K +C  WIF+R +K DG+V ++KARLV QGF Q EG D F+T APVAH++T+R + +LA  H+
Sbjct:   37 GCKPLCCKWIFKRKMKVDGTVDKFKARLVIQGFRQKEGIDYFDTYAPVAHITTIRLLLALAALHN 101          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A7C9CYH4_OPUST (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CYH4_OPUST)

HSP 1 Score: 75.5 bits (184), Expect = 7.600e-16
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATA 195
            P G+KAI + W+F+  LK DGS+ RYKARLV +G +Q EG D  ET +PV  M+T+RT+ +LA A
Sbjct:   66 PAGKKAISSKWVFKIKLKADGSLERYKARLVVRGNTQKEGIDYTETFSPVVKMTTIRTIIALAAA 130          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI)

HSP 1 Score: 79.7 bits (195), Expect = 8.550e-16
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201
            P G KA+   W+ ER +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA  HD
Sbjct:  483 PPGCKALGCKWVLERKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHD 549          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR)

HSP 1 Score: 77.8 bits (190), Expect = 1.450e-15
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAH 198
            P G K +   WIF+R +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA+ H
Sbjct:   16 PPGCKPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIH 81          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: I1PI69_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PI69_ORYGL)

HSP 1 Score: 78.2 bits (191), Expect = 1.610e-15
Identity = 32/66 (48.48%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAH 198
            P G K +   W+F++ L+ DG++ +YKARLVA+G++Q EG+D F+T +PVA ++T+R + SLAT+H
Sbjct:  222 PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQNEGEDFFDTYSPVARLTTVRVLLSLATSH 287          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A6L2J1U0_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2J1U0_TANCI)

HSP 1 Score: 78.6 bits (192), Expect = 2.180e-15
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201
            P G KA+   WI +R +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA  HD
Sbjct:  655 PPGCKALGCKWIIKRKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHD 721          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI)

HSP 1 Score: 78.6 bits (192), Expect = 2.190e-15
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLA 189
            P GRKAI + W+++  L EDG   R+KARLVAQGF+QV G D FET APVA + +LR + +LA
Sbjct:  671 PAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALA 733          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI)

HSP 1 Score: 78.6 bits (192), Expect = 2.190e-15
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLA 189
            P GRKAI + W+++  L EDG   R+KARLVAQGF+QV G D FET APVA + +LR + +LA
Sbjct:  672 PAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALA 734          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI)

HSP 1 Score: 78.2 bits (191), Expect = 2.900e-15
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201
            P G KA+   WI +R +K DGS+ +YKARLV QGF Q EG D F+T APVA +ST+R + +LA  HD
Sbjct:   12 PPGCKALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHD 78          
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Match: A0A392R7E7_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R7E7_9FABA)

HSP 1 Score: 74.3 bits (181), Expect = 3.140e-15
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPVAHMSTLRTVFSLATAHD 201
            PV +KAI   W+F+  L  DGSVA+YKARL+A+GF Q EG D  E  +PVA + T+R V ++A A D
Sbjct:   62 PVDKKAIAVKWVFKLKLNPDGSVAKYKARLMARGFLQREGLDYSEVYSPVARIETVRLVVAIANARD 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14611.2767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L2M7G6_TANCI6.010e-1653.85Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A7C9CYH4_OPUST7.600e-1653.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699IEH1_TANCI8.550e-1655.22Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A5N6Q4G6_9ASTR1.450e-1554.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
I1PI69_ORYGL1.610e-1548.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2J1U0_TANCI2.180e-1555.22Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A177TL22_9BASI2.190e-1557.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U0N4_9BASI2.190e-1557.14Integrase catalytic domain-containing protein n=2 ... [more]
A0A6L2LJ48_TANCI2.900e-1555.22Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A392R7E7_9FABA3.140e-1552.24Retrovirus-related pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14611contigH-paniculata_contig14611:5602..5811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score78.2
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog4538.ORGLA03G0406500.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929163.3207567-CDS-H-paniculata_contig14611:5601..58111622929163.3207567-CDS-H-paniculata_contig14611:5601..5811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14611 5602..5811 +
1691480755.9347923-CDS-H-paniculata_contig14611:5601..58111691480755.9347923-CDS-H-paniculata_contig14611:5601..5811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14611 5602..5811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14611.2767.1prot_H-paniculata_contig14611.2767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14611 5602..5811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14611.2767.1

>prot_H-paniculata_contig14611.2767.1 ID=prot_H-paniculata_contig14611.2767.1|Name=mRNA_H-paniculata_contig14611.2767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
PVGRKAICTNWIFERNLKEDGSVARYKARLVAQGFSQVEGKDVFETSAPV
AHMSTLRTVFSLATAHDSN*
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mRNA from alignment at H-paniculata_contig14611:5602..5811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14611.2767.1 ID=mRNA_H-paniculata_contig14611.2767.1|Name=mRNA_H-paniculata_contig14611.2767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig14611:5602..5811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTAGGGCGGAAGGCGATCTGTACCAATTGGATTTTCGAGCGTAATCT GAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTAGTGGCTCAAG GATTTTCACAGGTGGAGGGCAAAGATGTTTTTGAAACCAGTGCCCCCGTA GCTCACATGTCGACATTGCGTACCGTTTTTAGCCTGGCCACCGCACATGA TTCGAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14611:5602..5811+

>mRNA_H-paniculata_contig14611.2767.1 ID=mRNA_H-paniculata_contig14611.2767.1|Name=mRNA_H-paniculata_contig14611.2767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig14611:5602..5811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTAGGGCGGAAGGCGATCTGTACCAATTGGATTTTCGAGCGTAATCT
GAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTAGTGGCTCAAG
GATTTTCACAGGTGGAGGGCAAAGATGTTTTTGAAACCAGTGCCCCCGTA
GCTCACATGTCGACATTGCGTACCGTTTTTAGCCTGGCCACCGCACATGA
TTCGAACTAACCGGTAGGGCGGAAGGCGATCTGTACCAATTGGATTTTCG
AGCGTAATCTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTA
GTGGCTCAAGGATTTTCACAGGTGGAGGGCAAAGATGTTTTTGAAACCAG
TGCCCCCGTAGCTCACATGTCGACATTGCGTACCGTTTTTAGCCTGGCCA
CCGCACATGATTCGAACTAA
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