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Homology
BLAST of mRNA_H-paniculata_contig1438.2632.1 vs. uniprot
Match: D8LBS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS2_ECTSI) HSP 1 Score: 126 bits (316), Expect = 4.320e-28 Identity = 148/313 (47.28%), Postives = 182/313 (58.15%), Query Frame = 1
Query: 466 AMGETGPAGADNDAQLAKLHLGIICNQGVAVRGGVGLGTAFSTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLANKHQKAAAQAATDSARQLSVAHAHAGAIEFMIGNPAEAAMLFGRQLDEARKADDALLEAMAERNLADARELTSDLPGALRHLRRCLDLARSARNAAIEADTYRRISGIYALIAGVAAAHGLDEIDGGEAGDATPDEGKEEVGGVGKKDHLEDYGYDGMTEAAVYTRTCLTSPPAHSDSLQIEA-KEDEDVAFLRATASRRAHLFAERYEHAASGLAWPIGA 1401
A+G + PAG++N Q+ L LG++ NQG+ RGG+G+G AFST +AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + M G P +AA F QL EA+ A D +LEA+AERNLAD RE+ DLPGAL HLRRC LA+ +RN+A+EAD RR+S +YA IAG + + + E GG D+G DG T+ S +ED DV FL++TA+ RA LFAERYE A GL WP+ +
Sbjct: 97 AVGVSVPAGSENSDQITALQLGVLGNQGLVARGGLGMGAAFST-SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMTGRPVQAAERFELQLKEAQNAGDPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIAGQSGXXXXXXXXXXXXXXSP----EREKGG--------DHG-DGXXXXXXXTQERNRSDSGXXXXXXXXXXREDSDVEFLKSTAADRARLFAERYETAVFGLEWPVSS 395
BLAST of mRNA_H-paniculata_contig1438.2632.1 vs. uniprot
Match: A0A6H5KC12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC12_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.880e-11 Identity = 58/160 (36.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query: 247 AAATAAILISEGGQAGEGGVYLAQRINNAVLEGVAWSLAGGGTTDGV-------------------AALKRAERLTEKM-----------------------ATNDKTTSAPMSAAMGETGPAGADNDAQLAKLHLGIICNQGVAVRGGVGLGTAFSTGA 600
AA AA LI+ G +AG+ G + Q++N A+LEG+AWSLAG G+ +G AA+KRAER EK + +D SA A+G + PAG++N Q+ L LG++ QG+ RGG G+G AFST A
Sbjct: 83 AAEKAAGLIAAGCKAGDLGAHPTQKMNGAMLEGLAWSLAGQGSAEGASLLFRGFVVGRRGEIGERAAAMKRAERGLEKFLDSEHRRPSVAASAAGVAKRSASSADDVPLSARAQEAVGVSVPAGSENSDQITALQLGVLGTQGLVARGGFGMGAAFSTSA 242
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_002910.1 |
| Exons | 6 |
| Model size | 1431 |
| Cds size | 1431 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1438.2632.1 >prot_H-paniculata_contig1438.2632.1 ID=prot_H-paniculata_contig1438.2632.1|Name=mRNA_H-paniculata_contig1438.2632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=477bp
AAEEADVGSRLRRSKSGALALEIANSCGLCRLEIGTQHLSIPRHGSNERS
YLHDEAEHTARSDAYDAKPSENSTGGEDSEGSAAATAAILISEGGQAGEG
GVYLAQRINNAVLEGVAWSLAGGGTTDGVAALKRAERLTEKMATNDKTTS
APMSAAMGETGPAGADNDAQLAKLHLGIICNQGVAVRGGVGLGTAFSTGA
AGSGSTRRTSAASGVTKDATATLAAVAAARLAARAANAGWREASLLANKH
QKAAAQAATDSARQLSVAHAHAGAIEFMIGNPAEAAMLFGRQLDEARKAD
DALLEAMAERNLADARELTSDLPGALRHLRRCLDLARSARNAAIEADTYR
RISGIYALIAGVAAAHGLDEIDGGEAGDATPDEGKEEVGGVGKKDHLEDY
GYDGMTEAAVYTRTCLTSPPAHSDSLQIEAKEDEDVAFLRATASRRAHLF
AERYEHAASGLAWPIGATMTNRQLVP* back to topmRNA from alignment at H-paniculata_contig1438:11032..15764- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1438.2632.1 ID=mRNA_H-paniculata_contig1438.2632.1|Name=mRNA_H-paniculata_contig1438.2632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4733bp|location=Sequence derived from alignment at H-paniculata_contig1438:11032..15764- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGAAGAAGCCGACGTCGGGAGCCGCCTCCGGAGATCCAAGTCCGG
GGCGCTCGCTTTGGAAATCGCGAACTCGTGCGGACTCTGCAGGCTGGAGA
TAGGAACACAGCATCTTAGCATCCCGCGGCATGGATCTAACGAACGGAGC
TACCTACACGATGAGGCCGAACACACTGCGCGAAGTGACGCCTATGATGC
AAAACCGTCGGAAAATAGTACGGGAGGCGAAGATAGTGAGGGCTCTGCGG
CAGCGACGGCGGCGATCTTGATATCGGAAGGCGGGCAGGCGGGGGAAGGG
GGAGTGTACCTAGCGCAGAGAATAAACAATGCCGTTCTAGAGGGTGTGGC
GTGGTCGCTGGCCGGAGGAGGTACCACCGACGGGGTGAGACAAGACGTAC
GGAAACAGATGGACTCCGGATTGCTATTTCAGTCGCTATTGCACGTCACG
ACAAGAATTGCGAGCAAGTTCAGTTTGTTTTTGCAAGAGACACTCGTGCA
TGTTGCGTCTTGTGTCGAGGAAGCGATCAGCCGAAGCCACAACAAATAGG
CGTGTTATAATAGGTCATAAAATTGCATATATGACACAGATGCACTGTTT
TTTTACTAATTACTTAATTCGCAAGGCAGACCGATAGGGTCAATTGGTGA
GACGCGGTAAGAGGCGACGGCCCAGGCGAGCAGTCTGTTTTTAGATTCCT
AGGAGACCAGGGGAAAAGATTTTCTGATACGTATCCTGGACTCCGACCCA
GGGATCGGTGCGAGTGATGTAAAATGTTGGTGGTTTTAGTGCTTTTTCGT
ATATGCTCGAAAGCGGGACAAAGCACATCGAATGCTTTTGCGTGTGATGG
GAGACAAGTGCACCTGTTGAGCTTCATTAGCACATGCTCGGAATTTGTAG
AAAACAGTTATCTTGAATGCCGCAGCGTCTCCCTCTTTGGTTTGTCATCC
ATCCTGAAAGTGCCACCTCCGAGATACACAAATGTTGCTATCGAACGTTT
GGAGATTTTCCCCCTGATTAGTGGTGGGTACCAGGTACGTTTTGGAGTTT
TTATGGTTCACGATAACCGCAAAGTTAAACCCTCTCTTTGCTTTTAACGC
GCTTGATAGGTGGCGGCTTTGAAACGGGCCGAGAGACTGACGGAAAAAAT
GGCCACCAACGACAAGACAACCTCCGCGCCGATGTCGGCAGCGATGGGAG
AGACCGGACCTGCTGGTGCTGACAACGACGCTCAGCTTGCCAAGGTACGG
TGTACAGAGTAAAACACAGGTAAAGGCTCATGTTCGTGGATGACCGGAGT
GACAGATGGAATTTATGTTAATTCGTTTCTCGTCAGTCGAACACCCCCTG
CACAAAAAGGTTGGCAGCAATGTAGATTCCCGAGCAGCCAAATGGCTATC
GCGTCGGACTCCGTTGTGTCATCCTCTTGACATTTTCCGTGAGAACTATC
GTTGTCTTTTCTCGTAAATAATTGCAGAGTTAATCGTGGGTGGTATATAT
TTTTTGCAGCTACACCTTGGTATTATCTGCAATCAAGGGGTGGCTGTTCG
CGGGGGGGTTGGACTGGGCACCGCTTTTTCTACGGGTGCGGCAGGAAGTG
GATCGACACGACGGACCTCGGCGGCATCGGGGGTTACGAAGGACGCAACG
GCGACGCTCGCTGCTGTTGCCGCCGCGAGATTGGCCGCAAGGGCGGCAAA
CGCGGGCTGGCGAGAGGCCAGCCTGCTGGCCAACAAACATCAAAAGGCTG
CTGCTCAGGTGCGTGCATGAATAAGTGAACGTTGTCGTGCTATGTTAGCT
CCATGGTTTGGTTGATCAAACAGAAGAAAAATGGTGGGAAAAATTGTTTT
AACAACGGGTGTGCTGTTTGTTGTTACCGGGGGAATAAAGCTGCACTCAG
TGGTAGTCGACTGCCGTTGCTGACAGTCGAACAAATGAAACGATTGCTGC
ACCATTCAAAATGAGCTCTACATAGTAGAACGCACGGTGCAAGGATTCAT
CTAGACTTGCAAAAGGAGTTCTTGAAAATTCGAAGGGTTGCGCGCTAGAG
TGAATGCCTGGAGCTGGCTACCCTGTACGAAGGAGAGATACGCGGGTAAA
AGAAAGTGAATTGGGGGATATATTGAAGAGTACAGTAATGCGATGGAGAG
TCCTTTGAAACACGAAGTTGCACAAAAATGAAGATGAGAGTGATGACAGG
GGCAGTAAAGGGTCCAAAGATATGGGGGCTGTTGAAGATCGAATAGGGAT
ACACGTTTGAGGCCACCTTTCGCAGAATAAGAACAAGGAGTGATGGGTCA
TCGGCCATCGCTCTTGCGGGAACAATGAACCGCACCTCGAGGACGCGATC
CCAACGGTCTATATCAGCTGAGGTATGAAAGGTACCAATACTCCTCTACC
TTCCCTTCCCAGTCGCCCGCCTTTCCTAGAGCAACGGGTTGCTCAGGGCC
GTTCTAAACGACGCCGTGTTTTTGTCCGATTTTGTCCGAATTTACCGCTT
CCGAATATTTGAAAATCGCGAACGCGAGCTCAGAATTTAGAGGTAAAATA
TCGCCGGAACACTCTACGGCATGTTGCACTCATACATTTGGTGTACTTTG
GTCACAATCGTAGAGTCGTTCAGCTCGCTGTTGCGATTTCCAATTTTCGG
AAAACAGAAAAATCGGACAAAGGACGGCCTCATTCAGAACATACCTTCGT
GTTGTATTGGAGATGGATGAGTAACAGCAGCGCTGTCAACCCCCCCTCTC
TCTCTATGTGTGTGTTCTGCGGACCAACGTTAGGCCGCAACTGACTCTGC
TCGGCAACTATCGGTGGCGCATGCACACGCGGGTGCAATTGAGTTCATGA
TCGGCAACCCAGCGGAGGCCGCAATGCTCTTCGGCCGTCAGCTAGACGAG
GCTCGAAAGGTAAGCCAGCGTGGAAACCTATAGGGGGGATTCTAGAGATG
ACCGAACATTGGAGAGTTGGTCAGTTGTTGACGAAAACAAATAGTGTTAC
GCTGGGGCTACTTGAGTAAAATTTCCATGTTTGCGAACTCTGCATGGAGC
GATGTGGTACACCCGACAACCCGCGGATTCTCCTGTAAGCAAACGCACCT
TGTATACATCTTTTTTTGCTTGTCTTCTGTGACTACGTAGTTCTCTCTGG
AATTTCTATGTATCGACACTATTTGTTTTGCCTTATAATATCGTGGGTGC
ATATATATATATATATATCATCTAGCCGTCTTCAAGGTCTCAAGAACTCA
ACTGGGCCTTCTCAAAACTATCTACCGAAGGAAGGTGCGCTGAACGAAAA
GCTTTTAGTCACTACTTCCATTATGTACGAACAGCTGCCTATCGGAAATC
GCTGTAACTGTTGAGCCCGTGCCTACAGTGGTCTTTGGATGCCTTAGTCT
CGCCGAGAGTCCAGCCTTTTAATCCAGGTAGTGCTGGATTCCGCACAAGT
CGTACAACTTGATAAATCCTATTCTCGATCCGCAAACTAACCACCAGATC
CAGCGACGATACGCTCCAATCCTACGCAACCTGCTACCGCGAAGAATTCT
TCTTGAGCAAAAGGGAGAAGGCAAACTATATCTAACCCCTTATTATCCTG
TTCTTGGGGGGTACTTGTCACCGCAGAATAATAATAATAATAATAATAAT
AATGATCATAAAACCTCGCAGGCGGACGATGCCCTCCTCGAGGCTATGGC
TGAGCGAAACCTGGCCGACGCCCGAGAGTTGACGTCCGATCTGCCAGGGG
CTCTCAGGCATCTCCGGCGGTGCCTCGACCTGGCGAGGAGTGCACGCAAC
GCGGCTATCGAAGCAGACACGTATCGTCGAATATCCGGAATTTATGCATT
GATAGCCGGTGTCGCCGCAGCCCACGGGTTAGACGAGATAGACGGCGGTG
AGGCGGGGGATGCAACGCCAGACGAGGGGAAGGAGGAGGTGGGGGGAGTG
GGGAAGAAGGACCATTTGGAGGACTACGGTTATGACGGCATGACAGAGGC
TGCGGTGTGTACATTAACAATTATTTTCTCTTGTTGGGTTATATGCCTAC
GGTCACAATAATGTACTCAGTATTGTAGCGGTGGCCCCGATCTGCTCTTG
GGTTTGGGTGCCTACGGTCGGAATACTGTACTCTACTTCACATGGGAGCG
GGGGTGGAGGATATTGAAATCAAATAGCGTTGTTAAACTTTTACAGGTTG
TTTTTCTCACCGCACTAAAATTAATCGAATACGTACGTAAGTTGAACTTG
CTCTTGACACCACATCCTACATCGACCGGGACACGGGAGCTGACGATTGC
CCCATGCATGATAATGAAACTGAAGTCTCATACTCTACATACGAGATTTT
TTATTTTTTATGTTTATTTTTTCATCTGCGGAGTAGGCGCCACCCCGGTT
CGGCTGAACCAGGTAGGCAGTGTGGGGGTTGTTGCACCCACTAAAAGAAA
GACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCC
GTTCGGGCGTAGGTCCGTGTCTACATACGAGATATACACGCACGTGCCTT
ACGTCGCCCCCCGCACACTCGGACTCGTTGCAGATTGAGGCAAAAGAAGA
CGAGGACGTGGCATTTTTGAGAGCAACGGCTTCGAGAAGGGCCCATTTGT
TTGCCGAGCGCTATGAGCATGCGGCATCGGGATTGGCGTGGCCAATCGGG
GCGACTATGACCAATAGGCAGTTGGTTCCATGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1438:11032..15764- >mRNA_H-paniculata_contig1438.2632.1 ID=mRNA_H-paniculata_contig1438.2632.1|Name=mRNA_H-paniculata_contig1438.2632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2862bp|location=Sequence derived from alignment at H-paniculata_contig1438:11032..15764- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGAAGAAGCCGACGTCGGGAGCCGCCTCCGGAGATCCAAGTCCGG
GGCGCTCGCTTTGGAAATCGCGAACTCGTGCGGACTCTGCAGGCTGGAGA
TAGGAACACAGCATCTTAGCATCCCGCGGCATGGATCTAACGAACGGAGC
TACCTACACGATGAGGCCGAACACACTGCGCGAAGTGACGCCTATGATGC
AAAACCGTCGGAAAATAGTACGGGAGGCGAAGATAGTGAGGGCTCTGCGG
CAGCGACGGCGGCGATCTTGATATCGGAAGGCGGGCAGGCGGGGGAAGGG
GGAGTGTACCTAGCGCAGAGAATAAACAATGCCGTTCTAGAGGGTGTGGC
GTGGTCGCTGGCCGGAGGAGGTACCACCGACGGGGCAGCGGAAGAAGCCG
ACGTCGGGAGCCGCCTCCGGAGATCCAAGTCCGGGGCGCTCGCTTTGGAA
ATCGCGAACTCGTGCGGACTCTGCAGGCTGGAGATAGGAACACAGCATCT
TAGCATCCCGCGGCATGGATCTAACGAACGGAGCTACCTACACGATGAGG
CCGAACACACTGCGCGAAGTGACGCCTATGATGCAAAACCGTCGGAAAAT
AGTACGGGAGGCGAAGATAGTGAGGGCTCTGCGGCAGCGACGGCGGCGAT
CTTGATATCGGAAGGCGGGCAGGCGGGGGAAGGGGGAGTGTACCTAGCGC
AGAGAATAAACAATGCCGTTCTAGAGGGTGTGGCGTGGTCGCTGGCCGGA
GGAGGTACCACCGACGGGGTGGCGGCTTTGAAACGGGCCGAGAGACTGAC
GGAAAAAATGGCCACCAACGACAAGACAACCTCCGCGCCGATGTCGGCAG
CGATGGGAGAGACCGGACCTGCTGGTGCTGACAACGACGCTCAGCTTGCC
AAGGTGGCGGCTTTGAAACGGGCCGAGAGACTGACGGAAAAAATGGCCAC
CAACGACAAGACAACCTCCGCGCCGATGTCGGCAGCGATGGGAGAGACCG
GACCTGCTGGTGCTGACAACGACGCTCAGCTTGCCAAGCTACACCTTGGT
ATTATCTGCAATCAAGGGGTGGCTGTTCGCGGGGGGGTTGGACTGGGCAC
CGCTTTTTCTACGGGTGCGGCAGGAAGTGGATCGACACGACGGACCTCGG
CGGCATCGGGGGTTACGAAGGACGCAACGGCGACGCTCGCTGCTGTTGCC
GCCGCGAGATTGGCCGCAAGGGCGGCAAACGCGGGCTGGCGAGAGGCCAG
CCTGCTGGCCAACAAACATCAAAAGGCTGCTGCTCAGCTACACCTTGGTA
TTATCTGCAATCAAGGGGTGGCTGTTCGCGGGGGGGTTGGACTGGGCACC
GCTTTTTCTACGGGTGCGGCAGGAAGTGGATCGACACGACGGACCTCGGC
GGCATCGGGGGTTACGAAGGACGCAACGGCGACGCTCGCTGCTGTTGCCG
CCGCGAGATTGGCCGCAAGGGCGGCAAACGCGGGCTGGCGAGAGGCCAGC
CTGCTGGCCAACAAACATCAAAAGGCTGCTGCTCAGGCCGCAACTGACTC
TGCTCGGCAACTATCGGTGGCGCATGCACACGCGGGTGCAATTGAGTTCA
TGATCGGCAACCCAGCGGAGGCCGCAATGCTCTTCGGCCGTCAGCTAGAC
GAGGCTCGAAAGGCCGCAACTGACTCTGCTCGGCAACTATCGGTGGCGCA
TGCACACGCGGGTGCAATTGAGTTCATGATCGGCAACCCAGCGGAGGCCG
CAATGCTCTTCGGCCGTCAGCTAGACGAGGCTCGAAAGGCGGACGATGCC
CTCCTCGAGGCTATGGCTGAGCGAAACCTGGCCGACGCCCGAGAGTTGAC
GTCCGATCTGCCAGGGGCTCTCAGGCATCTCCGGCGGTGCCTCGACCTGG
CGAGGAGTGCACGCAACGCGGCTATCGAAGCAGACACGTATCGTCGAATA
TCCGGAATTTATGCATTGATAGCCGGTGTCGCCGCAGCCCACGGGTTAGA
CGAGATAGACGGCGGTGAGGCGGGGGATGCAACGCCAGACGAGGGGAAGG
AGGAGGTGGGGGGAGTGGGGAAGAAGGACCATTTGGAGGACTACGGTTAT
GACGGCATGACAGAGGCTGCGGTGCGGACGATGCCCTCCTCGAGGCTATG
GCTGAGCGAAACCTGGCCGACGCCCGAGAGTTGACGTCCGATCTGCCAGG
GGCTCTCAGGCATCTCCGGCGGTGCCTCGACCTGGCGAGGAGTGCACGCA
ACGCGGCTATCGAAGCAGACACGTATCGTCGAATATCCGGAATTTATGCA
TTGATAGCCGGTGTCGCCGCAGCCCACGGGTTAGACGAGATAGACGGCGG
TGAGGCGGGGGATGCAACGCCAGACGAGGGGAAGGAGGAGGTGGGGGGAG
TGGGGAAGAAGGACCATTTGGAGGACTACGGTTATGACGGCATGACAGAG
GCTGCGGTATATACACGCACGTGCCTTACGTCGCCCCCCGCACACTCGGA
CTCGTTGCAGATTGAGGCAAAAGAAGACGAGGACGTGGCATTTTTGAGAG
CAACGGCTTCGAGAAGGGCCCATTTGTTTGCCGAGCGCTATGAGCATGCG
GCATCGGGATTGGCGTGGCCAATCGGGGCGACTATGACCAATAGGCAGTT
GGTTCCATGAATATACACGCACGTGCCTTACGTCGCCCCCCGCACACTCG
GACTCGTTGCAGATTGAGGCAAAAGAAGACGAGGACGTGGCATTTTTGAG
AGCAACGGCTTCGAGAAGGGCCCATTTGTTTGCCGAGCGCTATGAGCATG
CGGCATCGGGATTGGCGTGGCCAATCGGGGCGACTATGACCAATAGGCAG
TTGGTTCCATGA back to top
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