mRNA_H-paniculata_contig14378.2630.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14378.2630.1
Unique NamemRNA_H-paniculata_contig14378.2630.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14378.2630.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.040e-25
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 MLLELVTTPEMSAAIVGALHKLCFAKAASEKDGAIMCNAWANHALSTFEEVLHSFVYQGCGALTDHAGARACGFNMARLV 240
            ML +LV TPE SAA+V ALH LCFA+A +E+ GA MCN WAN AL+ FE++L  FVYQG  AL DH+GARACGF+MA LV
Sbjct:   54 MLQDLVATPETSAALVAALHMLCFAQATTEEAGAAMCNEWANSALTNFEQLLDVFVYQGSEALRDHSGARACGFDMAILV 133
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BLAST of mRNA_H-paniculata_contig14378.2630.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 8.360e-25
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 MLLELVTTPEMSAAIVGALHKLCFAKAASEKDGAIMCNAWANHALSTFEEVLHSFVYQGCGALTDHAGARACGFNMARLV 240
            ML +LV TPE SAA+V ALH LCFA+A +E+ GA MCN WAN AL+ FE++L  FVYQG  AL DH+GARACGF+MA LV
Sbjct:  898 MLQDLVATPETSAALVAALHMLCFAQATTEEAGAAMCNEWANSALTKFEQLLDVFVYQGSEALRDHSGARACGFDMAILV 977
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14378.2630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKF8_9PHAE6.040e-2566.25Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FP86_ECTSI8.360e-2566.25Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14378contigH-paniculata_contig14378:2896..5708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3e-21
Seed eggNOG ortholog2880.D7FP86
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
EggNOG free text desc.meiotic chromosome condensation
EggNOG OGsKOG0413@1,KOG0413@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size240
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14378.2630.1prot_H-paniculata_contig14378.2630.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14378 2896..5708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.7343001-CDS-H-paniculata_contig14378:2895..29731622929143.7343001-CDS-H-paniculata_contig14378:2895..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14378 2896..2973 +
1691480748.2040403-CDS-H-paniculata_contig14378:2895..29731691480748.2040403-CDS-H-paniculata_contig14378:2895..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14378 2896..2973 +
1622929143.7456522-CDS-H-paniculata_contig14378:4973..51041622929143.7456522-CDS-H-paniculata_contig14378:4973..5104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14378 4974..5104 +
1691480748.2159626-CDS-H-paniculata_contig14378:4973..51041691480748.2159626-CDS-H-paniculata_contig14378:4973..5104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14378 4974..5104 +
1622929143.7589207-CDS-H-paniculata_contig14378:5677..57081622929143.7589207-CDS-H-paniculata_contig14378:5677..5708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14378 5678..5708 +
1691480748.2235615-CDS-H-paniculata_contig14378:5677..57081691480748.2235615-CDS-H-paniculata_contig14378:5677..5708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14378 5678..5708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14378.2630.1

>prot_H-paniculata_contig14378.2630.1 ID=prot_H-paniculata_contig14378.2630.1|Name=mRNA_H-paniculata_contig14378.2630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MLLELVTTPEMSAAIVGALHKLCFAKAASEKDGAIMCNAWANHALSTFEE
VLHSFVYQGCGALTDHAGARACGFNMARLV
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mRNA from alignment at H-paniculata_contig14378:2896..5708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14378.2630.1 ID=mRNA_H-paniculata_contig14378.2630.1|Name=mRNA_H-paniculata_contig14378.2630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2813bp|location=Sequence derived from alignment at H-paniculata_contig14378:2896..5708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTGGAGCTGGTGACTACCCCAGAAATGTCAGCCGCGATTGTAGG
AGCGCTTCACAAGCTGTGCTTCGCTAAGGTACTTGTGGACCGCACCCCTC
TGGATGAAGACGAATACTTGAAGCATTCGCGACGAGAAAAATATCGTGTA
TGCCCTATTTCGTCCGAGTTTCAGGAAGTGCCGGCAGATACATGAAGTAA
TGAAGTGTTGAGACCTACCTTTTGACTTTGCTATTATTCGGAGCGGTCGT
AATATGGATGATCCGGGGTCTGGAGCACGTGGCATAAGCGGGCTCGTGCT
GAAGCTTCCACACGTCGGACGAATCATTATCCCTCCAAGTCACACTAGAA
AGAGGAATTATCAGAACCCGTTGATCCTAGAAAAATGAAAAAGAGATGAC
CACGGGTCAGAGAAGTCCAAGCGCAATTTTTGCGCTACTCCGCGTGGCCG
GCGTCCAGCGCTGGAGGGAGCGATAGTGGGAACAGGGCCCAAGGAACCTA
CCGATCATGTACACTAATAACAAGTAATTGGCCAGATGGATCATGATCTG
TTGGACGTGTTGTTAACTTCTTTTTTTTTGTCGTGAATACACGATGTGTT
CGTATTGGTTCGTTTGGGGGGGGTGAACCGTTGTGTGTGTGGAGACCAGG
AACGTTCCTGACGTTCCTGGGGTTTAATTCCTGCATCCCGGTCCGATCCG
GACGCGTGTTTTGCCTCGTTTGCGGACCAGCTTCCTAGCTGTGTCGGTCT
CTTCTTGGTCAAATATACCCGTATTTCAGGCGTGAATGAACGAGATGTCA
CAGCGGTGCACACACATGGGCATCTCGATCGCTCCCTAAATATGACAATC
GGATGATGACAGGAGTCGTTACGGGGTAATCCCTTCTCAAGAAGAACTAT
TGAGTGTGTGTGTGTGTGTGTATGGAGAGCAGGAACGTTCCGGACGTTCC
TGGGATTCTTGAATTCCGGTCCGATCCTACATGACATCTGCAGGCGTTTT
TGCTTTGTCTCTAGATGGCCAGTCATATCTTGAAAAGATAGACCTTTCGG
TACAGATAGATGAAAAACGGTATATACGTCGCACTATAAATACTGTGATA
GAGCGAAGCAGCGTGCCCACCGCAGGCAGTCTAAGGTGGAAGCGTCGTGT
TTTCATGTGTAGGTGTTCGTGATTACGTTGTGTTTCTTTCCTTGAGTGAT
GGTCGGCACACGATGCTCCCAGGAGAAACGGGGCTCTCGAGGGGATACCG
TCTGCTCTGAGAATCAGCTGGTAGTTTTGAGGATGTATAGAAATTTACAG
TGCGGGGCATGCTTTTTGGGTTTTATCTGTTGTTGATGAACAATGGTCTT
CATCCAGGGTCAACGGCGTTTAAATTACGTTCCGAAAAGAGGACAAGATG
CCACTGGTTGTTGAGCAACGTGGGGGCGTCACCTTAAAAAAGCGTCGGGA
CTCGCTAGATTAAAAAATATATATATATAAGTCTAATGCACTGGGCTCCT
GTATTAGCCTGGTCATCTCCCACACGCACGAAATATGTGAAGGCAAATTG
GGGGCAAATATATATCCTCACCGTTTGCCGGCAAAGAAGAGTCCTATAGA
AGCCTGTTACTGGTAATACAGACGGGGGGGGGGGGAGTTGTAGCGAGTGT
CCTATAGAAGGGGCATTTTACGACGAGTGTCTCTAATCGACAAGGAATAT
TTTTTACAATTCCCCTAACAAATCGATACCTGAATTTTTGTGTTAATTCT
GTGTCGCTGGTAAAACTGATCACTGATTAATCAGGTTCCGCACCCGTTTT
TTGTCTTTCTGTTTTTTTCCTTAATTTTTTTCATTTTTTTTCATTTTTTT
TATATATTTTTTTTCTTGCGTGTTTTTTTTTTCATTTTGTTGTCCTTTTT
TTTTATATGTATGTTCTTGCGTTTTTTTTTGTCCTTTTTTTTTCATACTT
GCGTCTTTTTTTTTTTCATTTTTTTTCATTTTTTTTTAATATGTATTTTC
TTGCGTTTTTTTTTTTTTCTGTCTCTTTCTCTTCTGTTGTCTTTTTCTCG
GCCATGAATACGTGATGAGGGAATACAGGCAGCGTCGGAAAAAGATGGGG
CAATCATGTGTAACGCCTGGGCTAACCATGCTCTGTCCACGTTCGAGGAA
GTGTTGCATTCGTTCGTGTATCAAGGCTGCGGTGCGCTCACTGACCACGC
CGGGGCTAGGTAAGGAATATTCCTAGAATTTTTTTCGAAAGGTCCCTGGT
GCTGTGGAACTCTTGAAGTCTATGTCGGAAAGTATTCTTATCAATCAATG
CCTGGAATGTTCCTGAAGAACGTTTCCAAGTAATGTTTGGGTGGAGAAAG
GATACTGCTTTCCATTTACGTATGTCCTTGTTTTGAATTTACTTGAATGA
ATGGGTGGAAAAACAACAACAACCCGATATGACCAGCATGACTGTATCTA
CCTATTAACTCTTTCGGGACGCAGCTTTCTGATTTTTTTTTTTAACCCCC
GGAAGGCTGAGGCGTCACCCATACCGAAGTATTTTACCGAAGTATAGCTT
TTTGAGATCTGGTCTCTGAGGTATGTTGACTGAGGTCTGTTTTTGGGACC
TTTTTTTTTTTTTTTTAATGTAAGAAAATAATTTGTCAGGATATATCAGA
CCTCGGGAAGCAACCCATCGTAGATCTGTTATTGTAGACCCAGATCTGCT
TTTGGGCTCTCCTTTTGGAATGCTCCAAAAGTACAGATCTTGAGCAAACT
ATTTTTTTTTTGTTTTTTTTTGCTCTGATCAGGGCTTGCGGGTTTAACAT
GGCTCGGCTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14378:2896..5708+

>mRNA_H-paniculata_contig14378.2630.1 ID=mRNA_H-paniculata_contig14378.2630.1|Name=mRNA_H-paniculata_contig14378.2630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig14378:2896..5708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTGGAGCTGGTGACTACCCCAGAAATGTCAGCCGCGATTGTAGG
AGCGCTTCACAAGCTGTGCTTCGCTAAGATGTTGCTGGAGCTGGTGACTA
CCCCAGAAATGTCAGCCGCGATTGTAGGAGCGCTTCACAAGCTGTGCTTC
GCTAAGGCAGCGTCGGAAAAAGATGGGGCAATCATGTGTAACGCCTGGGC
TAACCATGCTCTGTCCACGTTCGAGGAAGTGTTGCATTCGTTCGTGTATC
AAGGCTGCGGTGCGCTCACTGACCACGCCGGGGCTAGGCAGCGTCGGAAA
AAGATGGGGCAATCATGTGTAACGCCTGGGCTAACCATGCTCTGTCCACG
TTCGAGGAAGTGTTGCATTCGTTCGTGTATCAAGGCTGCGGTGCGCTCAC
TGACCACGCCGGGGCTAGGGCTTGCGGGTTTAACATGGCTCGGCTGGTGG
GCTTGCGGGTTTAACATGGCTCGGCTGGTG
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