mRNA_H-paniculata_contig1427.2588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1427.2588.1
Unique NamemRNA_H-paniculata_contig1427.2588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1427.2588.1 vs. uniprot
Match: A0A6H5KS00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS00_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.860e-19
Identity = 150/533 (28.14%), Postives = 202/533 (37.90%), Query Frame = 1 
Query:    1 EGDLDALDDLLRRDAARDGGDHVSGLVSGNTANRPLQ--DDGFGALDDLLGLDDGPRR-PLSPSTXXXXXXXXXXXXXXQGADGGDMDVDPSAAMVDSSRPGDRDLARTATPLLPPAAVSNTQVPPTSTPAAGEK----------------DAEGEILGDWLDDLLSMEDERFTDPTGGGDRGMTP----------------------------GGRKVSGAEPAPATSWFDDIPDISPTAKTTDATPRRSIHETQGNNNDVPNPQSPQSVDDWLSDLLDEDDEDFDSRQPSAMGK------------------------RDGSSGGG-----------DSPLSDVITGSSALEGWKTQT-----APVRSNVMGRSGGGGRFGGNRRGARDQDDFGGTTGRGRGQGGRGRTKDYQESRQSGSDHWGGASSSSGGKWGHDAGGGDFGASYGSTDRGVVWDN------GLDDDAGRPRGDRSHGDYELNPTEMAQRAVTADLKMLGSRGRWEDALKALVGARMRGVPVNNFMYNT 1320
            +G+LDALD  LRR+A             G  A       DDGF ALDDLLG++D P   P +P +                    D+D+DP A +     P   D        LP A  +  Q      P A                        +   WLDDLL +++E     +                                     G R  +     P T     IP  +P A T+ A                        +DDWL+DLL+ED+++ ++++ + + K                        ++G S G                 DV+TGS+ LEGWK  T     AP RSNVMGR             AR       +   G G    G ++ +    +SGS+   G  SS    WG     GD   S G +  GV W +      G+++  GR    R  G  EL+P E AQRA  ADLK LG RG+WEDA +ALVGAR+RGVPVN +MYN+
Sbjct:   97 DGNLDALDAQLRREAGP-----TQQQQQGQAAALAAAGFDDGFSALDDLLGVEDSPSASPRAPRSSRSN----------------DVDIDPFAKL---DSPVITDSLDDLLSELPAAPAAGNQAAAGRRPTAXXXXXXXXXXXXXXXXXXXSGTAAVSESWLDDLLDLDNENLEVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPRSAAKVPDRPVTGDAVPIPPSNP-ADTSAA------------------------LDDWLNDLLEEDNKNKNNQERTKLSKPAAPFQQEQRLRASLEDDPWDFAAKEGDSSGSFXXXXXXXXXXXXXXXDVVTGSNQLEGWKANTVSSADAPRRSNVMGRR------------ARGTGSSSTSGSPGGGAAAEGTSRPWDP--ESGSEEGAGGRSSD---WGT----GDAWKSKGES--GVSWWDKDGPGMGMEETTGR----RGQGKRELDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNS 553
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BLAST of mRNA_H-paniculata_contig1427.2588.1 vs. uniprot
Match: D8LU53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU53_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-12
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query: 1120 GLDDDAGRPRGDRSHGDYELNPTEMAQRAVTADLKMLGSRGRWEDALKALVGARMRGVPVNNFMYNT 1320
            G+++  GR    R  G  EL+P E AQRA  ADLK LG RG+WEDA +ALVGAR+RGVPVN +MYN+
Sbjct:   73 GMEEATGR----RGQGKRELDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNS 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1427.2588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS00_9PHAE3.860e-1928.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU53_ECTSI1.070e-1259.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1427contigH-paniculata_contig1427:668..1990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D8LU53
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-16_000270.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1323
Cds size1323
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.9067066-CDS-H-paniculata_contig1427:667..19901622929135.9067066-CDS-H-paniculata_contig1427:667..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1427 668..1990 -
1691480745.102547-CDS-H-paniculata_contig1427:667..19901691480745.102547-CDS-H-paniculata_contig1427:667..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1427 668..1990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1427.2588.1prot_H-paniculata_contig1427.2588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1427 668..1990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1427.2588.1

>prot_H-paniculata_contig1427.2588.1 ID=prot_H-paniculata_contig1427.2588.1|Name=mRNA_H-paniculata_contig1427.2588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=441bp
EGDLDALDDLLRRDAARDGGDHVSGLVSGNTANRPLQDDGFGALDDLLGL
DDGPRRPLSPSTVSTLATSAPSGKIGQGADGGDMDVDPSAAMVDSSRPGD
RDLARTATPLLPPAAVSNTQVPPTSTPAAGEKDAEGEILGDWLDDLLSME
DERFTDPTGGGDRGMTPGGRKVSGAEPAPATSWFDDIPDISPTAKTTDAT
PRRSIHETQGNNNDVPNPQSPQSVDDWLSDLLDEDDEDFDSRQPSAMGKR
DGSSGGGDSPLSDVITGSSALEGWKTQTAPVRSNVMGRSGGGGRFGGNRR
GARDQDDFGGTTGRGRGQGGRGRTKDYQESRQSGSDHWGGASSSSGGKWG
HDAGGGDFGASYGSTDRGVVWDNGLDDDAGRPRGDRSHGDYELNPTEMAQ
RAVTADLKMLGSRGRWEDALKALVGARMRGVPVNNFMYNT*
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mRNA from alignment at H-paniculata_contig1427:668..1990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1427.2588.1 ID=mRNA_H-paniculata_contig1427.2588.1|Name=mRNA_H-paniculata_contig1427.2588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1323bp|location=Sequence derived from alignment at H-paniculata_contig1427:668..1990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGCGATCTCGATGCCCTTGACGACCTGTTGCGGCGAGACGCTGCCAG
AGATGGAGGCGACCATGTGTCTGGGTTGGTCAGCGGCAACACGGCCAACC
GCCCGCTGCAAGATGACGGTTTCGGCGCCCTGGATGATCTCCTAGGGCTA
GACGACGGACCTCGACGTCCGTTATCCCCATCCACTGTATCCACGCTAGC
CACGAGTGCTCCCAGCGGGAAAATTGGCCAAGGTGCAGATGGCGGTGACA
TGGATGTGGACCCTTCCGCTGCTATGGTTGACAGTTCCCGCCCGGGCGAT
CGTGACCTCGCCAGAACCGCTACACCTCTGCTGCCGCCGGCTGCTGTGTC
TAATACTCAGGTTCCCCCTACCTCTACGCCAGCGGCGGGGGAGAAGGATG
CTGAGGGTGAGATCCTAGGTGATTGGCTGGATGACCTTCTCAGTATGGAG
GACGAGCGTTTCACAGATCCGACTGGAGGTGGCGACAGAGGCATGACCCC
CGGGGGGCGGAAGGTCAGTGGCGCCGAACCTGCACCGGCTACATCGTGGT
TCGACGACATACCAGACATATCCCCCACGGCCAAGACTACGGACGCAACC
CCGCGGCGGTCTATCCACGAGACGCAAGGAAATAATAATGACGTGCCGAA
CCCGCAATCCCCGCAGTCTGTTGACGATTGGCTGTCTGATCTGCTCGACG
AGGACGACGAAGACTTTGACTCTCGTCAGCCTTCGGCGATGGGGAAACGT
GACGGAAGCAGCGGCGGCGGCGACAGCCCGCTCTCCGACGTGATCACGGG
TTCGAGCGCACTCGAAGGCTGGAAAACGCAGACAGCGCCTGTGCGGAGCA
ACGTCATGGGCCGCTCGGGCGGTGGCGGCAGGTTCGGTGGAAATCGACGG
GGCGCGCGAGACCAGGACGACTTCGGGGGTACTACTGGAAGGGGCCGAGG
GCAAGGCGGCCGAGGACGAACAAAAGACTATCAAGAATCTAGACAATCTG
GCTCTGATCATTGGGGGGGGGCGTCTTCGTCGTCAGGGGGGAAGTGGGGG
CACGACGCAGGCGGGGGTGACTTTGGGGCTTCGTACGGGAGCACGGACAG
AGGCGTGGTTTGGGACAACGGTCTCGACGATGACGCTGGGCGACCGAGGG
GTGACCGCAGCCATGGTGATTATGAGCTGAATCCGACGGAGATGGCGCAA
AGGGCGGTAACGGCCGACTTGAAAATGCTTGGGAGCCGGGGGCGGTGGGA
GGACGCGTTGAAGGCGCTCGTGGGTGCGAGGATGCGAGGAGTTCCGGTTA
ACAACTTCATGTACAACACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1427:668..1990-

>mRNA_H-paniculata_contig1427.2588.1 ID=mRNA_H-paniculata_contig1427.2588.1|Name=mRNA_H-paniculata_contig1427.2588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2646bp|location=Sequence derived from alignment at H-paniculata_contig1427:668..1990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGCGATCTCGATGCCCTTGACGACCTGTTGCGGCGAGACGCTGCCAG
AGATGGAGGCGACCATGTGTCTGGGTTGGTCAGCGGCAACACGGCCAACC
GCCCGCTGCAAGATGACGGTTTCGGCGCCCTGGATGATCTCCTAGGGCTA
GACGACGGACCTCGACGTCCGTTATCCCCATCCACTGTATCCACGCTAGC
CACGAGTGCTCCCAGCGGGAAAATTGGCCAAGGTGCAGATGGCGGTGACA
TGGATGTGGACCCTTCCGCTGCTATGGTTGACAGTTCCCGCCCGGGCGAT
CGTGACCTCGCCAGAACCGCTACACCTCTGCTGCCGCCGGCTGCTGTGTC
TAATACTCAGGTTCCCCCTACCTCTACGCCAGCGGCGGGGGAGAAGGATG
CTGAGGGTGAGATCCTAGGTGATTGGCTGGATGACCTTCTCAGTATGGAG
GACGAGCGTTTCACAGATCCGACTGGAGGTGGCGACAGAGGCATGACCCC
CGGGGGGCGGAAGGTCAGTGGCGCCGAACCTGCACCGGCTACATCGTGGT
TCGACGACATACCAGACATATCCCCCACGGCCAAGACTACGGACGCAACC
CCGCGGCGGTCTATCCACGAGACGCAAGGAAATAATAATGACGTGCCGAA
CCCGCAATCCCCGCAGTCTGTTGACGATTGGCTGTCTGATCTGCTCGACG
AGGACGACGAAGACTTTGACTCTCGTCAGCCTTCGGCGATGGGGAAACGT
GACGGAAGCAGCGGCGGCGGCGACAGCCCGCTCTCCGACGTGATCACGGG
TTCGAGCGCACTCGAAGGCTGGAAAACGCAGACAGCGCCTGTGCGGAGCA
ACGTCATGGGCCGCTCGGGCGGTGGCGGCAGGTTCGGTGGAAATCGACGG
GGCGCGCGAGACCAGGACGACTTCGGGGGTACTACTGGAAGGGGCCGAGG
GCAAGGCGGCCGAGGACGAACAAAAGACTATCAAGAATCTAGACAATCTG
GCTCTGATCATTGGGGGGGGGCGTCTTCGTCGTCAGGGGGGAAGTGGGGG
CACGACGCAGGCGGGGGTGACTTTGGGGCTTCGTACGGGAGCACGGACAG
AGGCGTGGTTTGGGACAACGGTCTCGACGATGACGCTGGGCGACCGAGGG
GTGACCGCAGCCATGGTGATTATGAGCTGAATCCGACGGAGATGGCGCAA
AGGGCGGTAACGGCCGACTTGAAAATGCTTGGGAGCCGGGGGCGGTGGGA
GGACGCGTTGAAGGCGCTCGTGGGTGCGAGGATGCGAGGAGTTCCGGTTA
ACAACTTCATGTACAACACGTGAGAAGGCGATCTCGATGCCCTTGACGAC
CTGTTGCGGCGAGACGCTGCCAGAGATGGAGGCGACCATGTGTCTGGGTT
GGTCAGCGGCAACACGGCCAACCGCCCGCTGCAAGATGACGGTTTCGGCG
CCCTGGATGATCTCCTAGGGCTAGACGACGGACCTCGACGTCCGTTATCC
CCATCCACTGTATCCACGCTAGCCACGAGTGCTCCCAGCGGGAAAATTGG
CCAAGGTGCAGATGGCGGTGACATGGATGTGGACCCTTCCGCTGCTATGG
TTGACAGTTCCCGCCCGGGCGATCGTGACCTCGCCAGAACCGCTACACCT
CTGCTGCCGCCGGCTGCTGTGTCTAATACTCAGGTTCCCCCTACCTCTAC
GCCAGCGGCGGGGGAGAAGGATGCTGAGGGTGAGATCCTAGGTGATTGGC
TGGATGACCTTCTCAGTATGGAGGACGAGCGTTTCACAGATCCGACTGGA
GGTGGCGACAGAGGCATGACCCCCGGGGGGCGGAAGGTCAGTGGCGCCGA
ACCTGCACCGGCTACATCGTGGTTCGACGACATACCAGACATATCCCCCA
CGGCCAAGACTACGGACGCAACCCCGCGGCGGTCTATCCACGAGACGCAA
GGAAATAATAATGACGTGCCGAACCCGCAATCCCCGCAGTCTGTTGACGA
TTGGCTGTCTGATCTGCTCGACGAGGACGACGAAGACTTTGACTCTCGTC
AGCCTTCGGCGATGGGGAAACGTGACGGAAGCAGCGGCGGCGGCGACAGC
CCGCTCTCCGACGTGATCACGGGTTCGAGCGCACTCGAAGGCTGGAAAAC
GCAGACAGCGCCTGTGCGGAGCAACGTCATGGGCCGCTCGGGCGGTGGCG
GCAGGTTCGGTGGAAATCGACGGGGCGCGCGAGACCAGGACGACTTCGGG
GGTACTACTGGAAGGGGCCGAGGGCAAGGCGGCCGAGGACGAACAAAAGA
CTATCAAGAATCTAGACAATCTGGCTCTGATCATTGGGGGGGGGCGTCTT
CGTCGTCAGGGGGGAAGTGGGGGCACGACGCAGGCGGGGGTGACTTTGGG
GCTTCGTACGGGAGCACGGACAGAGGCGTGGTTTGGGACAACGGTCTCGA
CGATGACGCTGGGCGACCGAGGGGTGACCGCAGCCATGGTGATTATGAGC
TGAATCCGACGGAGATGGCGCAAAGGGCGGTAACGGCCGACTTGAAAATG
CTTGGGAGCCGGGGGCGGTGGGAGGACGCGTTGAAGGCGCTCGTGGGTGC
GAGGATGCGAGGAGTTCCGGTTAACAACTTCATGTACAACACGTGA
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