mRNA_H-paniculata_contig14249.2577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14249.2577.1
Unique NamemRNA_H-paniculata_contig14249.2577.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14249.2577.1 vs. uniprot
Match: D7FR48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR48_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 9.980e-18
Identity = 58/145 (40.00%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:    1 DVAERTLDSLSNSCRGELQAALERPSPSPLTPVCRTEVGSLL---GHQSRGEELPQKTKGDGQRVKSVPIQDEGIGPESSPAGAHPAHPATIVLSFVMCALVVFAAIGYYVSGGGGLNGRQPTRHDKRLHKKKNDRPRERGKKRR 426
            DVAERT++S S++CR  L+ ALE+P+ S L+  C  EVG +L    H   G   P++  G  +     P +    G ++     H    AT+VL+FV   LV   A+ Y  S G      +P R  +RLHKKK +R RERGKKRR
Sbjct:    5 DVAERTIESTSSACRYRLEEALEQPAGS-LSAACEAEVGRILDAKAHHKAGAGKPRR--GGDKSGTDAPTKSSRTGSKNEQTEDHGTQAATVVLTFVSLVLVAVVALAYCASVG------RPKRGGRRLHKKKQERIRERGKKRR 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14249.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR48_ECTSI9.980e-1840.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14249contigH-paniculata_contig14249:1694..3670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003510.1
Exons4
Model size715
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14249.2577.1prot_H-paniculata_contig14249.2577.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14249 1978..3670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.3204224-UTR-H-paniculata_contig14249:1693..19771622929134.3204224-UTR-H-paniculata_contig14249:1693..1977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14249 1694..1977 -
1691480744.2189274-UTR-H-paniculata_contig14249:1693..19771691480744.2189274-UTR-H-paniculata_contig14249:1693..1977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14249 1694..1977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929134.3337145-CDS-H-paniculata_contig14249:1977..20191622929134.3337145-CDS-H-paniculata_contig14249:1977..2019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 1978..2019 -
1691480744.2277257-CDS-H-paniculata_contig14249:1977..20191691480744.2277257-CDS-H-paniculata_contig14249:1977..2019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 1978..2019 -
1622929134.3473804-CDS-H-paniculata_contig14249:2622..26951622929134.3473804-CDS-H-paniculata_contig14249:2622..2695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 2623..2695 -
1691480744.2356257-CDS-H-paniculata_contig14249:2622..26951691480744.2356257-CDS-H-paniculata_contig14249:2622..2695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 2623..2695 -
1622929134.3600147-CDS-H-paniculata_contig14249:3046..32191622929134.3600147-CDS-H-paniculata_contig14249:3046..3219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 3047..3219 -
1691480744.2443044-CDS-H-paniculata_contig14249:3046..32191691480744.2443044-CDS-H-paniculata_contig14249:3046..3219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 3047..3219 -
1622929134.3770409-CDS-H-paniculata_contig14249:3529..36701622929134.3770409-CDS-H-paniculata_contig14249:3529..3670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 3530..3670 -
1691480744.25237-CDS-H-paniculata_contig14249:3529..36701691480744.25237-CDS-H-paniculata_contig14249:3529..3670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14249 3530..3670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14249.2577.1

>prot_H-paniculata_contig14249.2577.1 ID=prot_H-paniculata_contig14249.2577.1|Name=mRNA_H-paniculata_contig14249.2577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
DVAERTLDSLSNSCRGELQAALERPSPSPLTPVCRTEVGSLLGHQSRGEE
LPQKTKGDGQRVKSVPIQDEGIGPESSPAGAHPAHPATIVLSFVMCALVV
FAAIGYYVSGGGGLNGRQPTRHDKRLHKKKNDRPRERGKKRR*
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mRNA from alignment at H-paniculata_contig14249:1694..3670-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14249.2577.1 ID=mRNA_H-paniculata_contig14249.2577.1|Name=mRNA_H-paniculata_contig14249.2577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1977bp|location=Sequence derived from alignment at H-paniculata_contig14249:1694..3670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTTGCCGAGCGGACACTGGATTCCCTATCTAATTCTTGCCGTGGAGA
GCTCCAAGCAGCCCTGGAACGACCTTCCCCCAGCCCGCTGACCCCAGTGT
GCAGGACCGAAGTGGGTTCACTCTTGGGACATCAATCACGGGTACGACTG
AGATACAGTTTGATGTACTGGGTAGCCTAGCCATCTCCAGCAGGCCTGAG
CATGACACGAACTCTGTCGCCTACACGTACAGTACCATAGGTAGTTCCCG
ATGACATGTTTCGACTCTGCGATGCTCGTCGACAGCGCCGCGTTTTCGTG
TCTTGAACATGAGGTACACTGAATAGATCAGTTGATGGCGCTTTGCCAAT
GAACGTGAAGCATTCGTGTCAGCACTCTACGAGTCGCTCCCTGTGGCCAA
ACTACAGTATGTGGGTGATTCTGAACGCCGCTTGCCCGTTCGCTGCCTCA
GGGCGAAGAGCTGCCACAGAAGACGAAAGGGGACGGGCAGCGTGTCAAAT
CCGTACCAATACAAGACGAAGGAATAGGACCAGAATCTTCACCAGCTGGT
GCGCACCCTGCACACCCAGCGACGATCGTACTGTCCTTTGTGATGTGCGC
ACTCGTCGTGTTTGCTGCTATAGGGTGAGTGATGCGCTTACAACTCGATC
AGAGTCGGTACTGGTTCATTCCAGATCCCAGCATTCGGGGCTGCAAAACT
GTACTGAATTATACCACACGAAGGGCATTATTCATCTAATTGGGGTTACC
TTGGTTGCTAAGAAAGGTTTTCTGGAGTCCTAGCACTTCATGCTGTGCTG
CAAAATCCATAAACTGTTCACAGTAAAATCCAATTATGTACAAACTTTTG
AATGTTCGGCGTTGTCCTTGCTGCTATTATACACAGAGTAAATGGCCATG
GGCCACCTCTTTTCTGCTTGCACTCAACAGCGCACAATGCGCGCCTCTGC
CTTGTACCCATTACTTAATGAATAGATACTATGTAAGCGGGGGAGGAGGG
CTGAACGGACGACAACCGACACGACATGATAAGAGACTTCATAAGAAGGT
GGGATAACCATACGCTTTCCTGAATCTCTTCGTTTTCGACCACATTCCTA
GTAAGTAGTTCAGCGCTTGGTTTATGGTGTCCACACCTTACGTCGTACTC
ATGCAATCATTCGAAGGGCGGACTACATCGACATCCCAACCTCCCTACCT
TTGCCACTGCATCTGGCGGACCATTTGTATCTGATATTTACACTATACAT
TACAGTACGTGTACAACATTTAAGAAGCACTTCTTTGGTGAGCCTAATAA
CTTCCATGCCACGTATGTACTTACTCCCTTACCCTAACTCTAAGTTTCCT
ACATTCATGCTGTAGGATTTAGTACATGGGAATAATATGAGAAGTGTTTC
TCGAGCAAATTTCGTGCGCAAGCAAACAACTTGAGCCTGAATTTTTCACC
TCGTGCAATGTACTGTACATTTATCGCTCAAAAGGGTTGCTTGCAACAGG
GATGCGCTCTGTCTCGTGGTCATGTCCGTAGCAAGCACGAACTACGTGAA
AGATCAATTGCTTCCAAAACAAGCATAATTTTTCTGGGTCACCTGTTTGA
CTCTAGTCTATAATGAACATGACCGATTTCGTCCGTTCTTCGTGATTGCA
GAAAAACGACAGACCAAGAGAGAGGGGGAAGAAGCGGCGATGACAGCATG
CATTGAAAATGAGACTTCATGTCAAGGGAATTGGGGGATATTGTTAGCAC
ACAAGATAAACCGGTGGTGTCTTGTCCCTTCGAGGGTGTCCTTGGGCAGA
CGATTTGGTGTAGAAATTTTGTGGAGTTTTCAAGATGGATAGAAATAGGT
TATTTTCGTGTAAATAGTAGGGACGGGGAAAATTTGAATTGCCAACTAAG
CATGCACCATACCGCAAAATTAGCTTGCGATTCTGCACGAGACAGTCACC
AACTGTCGCGTTGTATCTACTCTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14249:1694..3670-

>mRNA_H-paniculata_contig14249.2577.1 ID=mRNA_H-paniculata_contig14249.2577.1|Name=mRNA_H-paniculata_contig14249.2577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig14249:1694..3670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTTGCCGAGCGGACACTGGATTCCCTATCTAATTCTTGCCGTGGAGA
GCTCCAAGCAGCCCTGGAACGACCTTCCCCCAGCCCGCTGACCCCAGTGT
GCAGGACCGAAGTGGGTTCACTCTTGGGACATCAATCACGGGATGTTGCC
GAGCGGACACTGGATTCCCTATCTAATTCTTGCCGTGGAGAGCTCCAAGC
AGCCCTGGAACGACCTTCCCCCAGCCCGCTGACCCCAGTGTGCAGGACCG
AAGTGGGTTCACTCTTGGGACATCAATCACGGGGCGAAGAGCTGCCACAG
AAGACGAAAGGGGACGGGCAGCGTGTCAAATCCGTACCAATACAAGACGA
AGGAATAGGACCAGAATCTTCACCAGCTGGTGCGCACCCTGCACACCCAG
CGACGATCGTACTGTCCTTTGTGATGTGCGCACTCGTCGTGTTTGCTGCT
ATAGGGGCGAAGAGCTGCCACAGAAGACGAAAGGGGACGGGCAGCGTGTC
AAATCCGTACCAATACAAGACGAAGGAATAGGACCAGAATCTTCACCAGC
TGGTGCGCACCCTGCACACCCAGCGACGATCGTACTGTCCTTTGTGATGT
GCGCACTCGTCGTGTTTGCTGCTATAGGATACTATGTAAGCGGGGGAGGA
GGGCTGAACGGACGACAACCGACACGACATGATAAGAGACTTCATAAGAA
GATACTATGTAAGCGGGGGAGGAGGGCTGAACGGACGACAACCGACACGA
CATGATAAGAGACTTCATAAGAAGAAAAACGACAGACCAAGAGAGAGGGG
GAAGAAGCGGCGATGAAAAAACGACAGACCAAGAGAGAGGGGGAAGAAGC
GGCGATGA
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