mRNA_H-paniculata_contig14224.2565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 160 bits (405), Expect = 4.390e-41 Identity = 85/146 (58.22%), Postives = 104/146 (71.23%), Query Frame = 2 Query: 938 GRRTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL 1372 G R+L EE DVPFREVVG+LMW A QT DI+ AVRA AR SH+PKK HW+AA K+L+Y TAHL L F+R+ +D+ ++ + DA++ASKATD+RSVSGA V V W S QKC S ST+ AEY+AMGDGVKEAL Sbjct: 21 GGRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLV---YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEAL 163
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.280e-38 Identity = 94/206 (45.63%), Postives = 127/206 (61.65%), Query Frame = 2 Query: 779 LGDFFPCPLGGVHQISCNLAYKLDWDMSHLDVEQ-AFIQSYLDK------RLFFGFPLGVGRRTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL 1372 LGDF P G + A+ D + +++ Q ++I+S L++ P R ++ +E DVPFREVVG+LMW A QT DI+ AVRA AR SH+PKK HW+AA K+L+Y TAHL L F+ + +D S ++ + DA++ASKA D+RSVSGA VL V W S+ QKC S ST+ AEY+AMGDGV+EAL Sbjct: 198 LGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVME-DEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDKSVDASTLV---YVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVREAL 399
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5KA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA29_9PHAE) HSP 1 Score: 150 bits (379), Expect = 3.330e-38 Identity = 79/140 (56.43%), Postives = 99/140 (70.71%), Query Frame = 2 Query: 956 GEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKCSI-STT*AEYIAMGDGVKEAL 1372 G + DVPFREVVG+LMW A QT DI+ AVRA AR SH+ KK HW+AA K+L+Y TAHL ++++ +D+ ++ + DAN+ASKATD+RSVSGA VL V W S Q+C I STT AEY+AMGDGVKEAL Sbjct: 2 GVDGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEAKKSHWKAARKILNYLLGTAHLTFKYKQDTMVDVGTLV---YVDANFASKATDRRSVSGARVLVADCLVGWISRTQRCVILSTTEAEYVAMGDGVKEAL 138
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 160 bits (405), Expect = 8.550e-38 Identity = 94/208 (45.19%), Postives = 127/208 (61.06%), Query Frame = 2 Query: 779 LGDFFPCPLGGVHQISCNLAYKLDWDMSHLDVEQ-AFIQSYLDK------RLFFGFPLGVGRRTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL*E 1378 LGD P G + A++ D + +++ Q ++I+S L++ P V R ++ EE+ DVPFREVVG MW A QT DI+ VRA AR SH+PK HW+AA K+L+Y TAHL L F+R+ +D+ ++ + DA++ASKATD+RSVSGA V G V W S QKC + ST+ AEY+AMGDGVKEAL E Sbjct: 383 LGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEAG-DVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLV---YVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFE 586
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.260e-37 Identity = 80/140 (57.14%), Postives = 98/140 (70.00%), Query Frame = 2 Query: 962 ESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL*E 1378 E DVPFREVVG LMW A QT DI+ AVRA AR SH+PK HW+AA K+L+Y TAHL L F+R+ +D+ ++ + A++ASKATD+RSVSGA V G V W S QKC + ST+ AEY+AMGDGVKEAL E Sbjct: 4 EEAGDVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLV---YVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFE 140
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 161 bits (407), Expect = 2.300e-37 Identity = 96/205 (46.83%), Postives = 125/205 (60.98%), Query Frame = 2 Query: 779 LGDFFPCPLGGVHQISCNLAYKLDWDMSHLDVEQ-AFIQSYLDKRLFF---GFPLGVGR--RTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL 1372 LGD P G + Y D +++ Q ++I+S L++ P + R+L EE DVPFREVVG+LMW A QT DI+ AVRA AR SH+PKK HW+AA K+L+Y TAHL L F+R+ +D+ ++ + DA++ASKATD+RSVSGA V V W S QKC S ST+ AEY+AMGDGVKEAL Sbjct: 1105 LGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLV---YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEAL 1306
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 160 bits (404), Expect = 4.830e-37 Identity = 95/205 (46.34%), Postives = 125/205 (60.98%), Query Frame = 2 Query: 779 LGDFFPCPLGGVHQISCNLAYKLDWDMSHLDVEQ-AFIQSYLDKRLFF---GFPLGVGR--RTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL 1372 LGD P G + Y D +++ Q ++I+S L++ P + R+L EE DVPFREVVG+LMW A QT DI+ AVRA AR SH+PKK HW+AA K+L+Y TAHL L F+R+ +D+ ++ + DA++ASKATD+RSVSGA V V W S QKC S ST+ +EY+AMGDGVKEAL Sbjct: 895 LGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLV---YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEAL 1096
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.110e-36 Identity = 88/192 (45.83%), Postives = 117/192 (60.94%), Query Frame = 2 Query: 800 PLGGVHQISCNLAYKLDWDMSHLDVEQAFIQSYLDKRLFFGFPLGVGRRTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL 1372 P GGV C + + D S L+ S + P R ++ EE+ DVPFREVVG LMW A T + + AVR AR SH+PKK W+AA K+L Y K TAHL L ++++ +D+ ++ + DA++ASKATD+RSVSGA V G V+W++ QKC S+ST+ AEYIAMGDGVKEAL Sbjct: 13 PQGGVLCFGCRAGRRRNRDWSVLERFNICRTSSIPAS-----PANDSRSVMEDEEAG-DVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLV---YVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEAL 195
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.700e-36 Identity = 91/205 (44.39%), Postives = 127/205 (61.95%), Query Frame = 2 Query: 779 LGDFFPCPLGGVHQISCNLAYKLDWDMSHLDVEQ-AFIQSYLDK-----RLFFGFPLGVGRRTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREGGIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL 1372 LGD P G + A+ D + +++ Q ++I+S L++ L +++ +E DVPFREVVG+LMW A QT DI+ AVRA AR SH+PKK H +AA K+L+Y AHL L ++++ +D+ ++ + DA++ASKATD+RSVSGA VL VAW S QKC ++STT AEY+AMGDGVKEAL Sbjct: 80 LGDSLPTKNLGEIRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASLTNDYKSVMEDEGARDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLV---YVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEAL 281
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.960e-36 Identity = 87/198 (43.94%), Postives = 118/198 (59.60%), Query Frame = 2 Query: 839 YKLDWDMSHLDVEQAFIQSYLDKR-LFFG--------FPLGVGRRTLDGEESVVDVPFREVVGTLMWNAKQTGRDIAKAVRAAARFSHDPKKIHWEAACKLLDYQKATAHLGLTFRREG--GIDMSVVLDFFFYDANYASKATDKRSVSGAAVLCVGSSVAWYSEIQKC-SISTT*AEYIAMGDGVKEAL*--EFWNF 1390 Y+ DWD L + Q Q+Y ++ + FG P+G+ D +E VV PFRE++G+LMW A QT DIA AVRA AR+ PK+IHW A +L Y T+ G+TFRR G+ M V F DA+YASKA D+RSVSG V+C G ++W+S QKC ++STT AEY+++ D +KE L + W F Sbjct: 62 YERDWDAGTLKISQ---QTYAEELGMEFGVEYGKEIPLPVGMKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEV-----FADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRF 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14224.2565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14224.2565.1 >prot_H-paniculata_contig14224.2565.1 ID=prot_H-paniculata_contig14224.2565.1|Name=mRNA_H-paniculata_contig14224.2565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp MSHLDVEQAFIQSYLDKRLFFGFPLGVGRRTLDGEESVVDVPFREVVGTLback to top mRNA from alignment at H-paniculata_contig14224:1322..3813- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14224.2565.1 ID=mRNA_H-paniculata_contig14224.2565.1|Name=mRNA_H-paniculata_contig14224.2565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2492bp|location=Sequence derived from alignment at H-paniculata_contig14224:1322..3813- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14224:1322..3813- >mRNA_H-paniculata_contig14224.2565.1 ID=mRNA_H-paniculata_contig14224.2565.1|Name=mRNA_H-paniculata_contig14224.2565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig14224:1322..3813- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |