mRNA_H-paniculata_contig14223.2564.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14223.2564.1
Unique NamemRNA_H-paniculata_contig14223.2564.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14223.2564.1 vs. uniprot
Match: D7FQI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI7_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 8.000e-43
Identity = 140/246 (56.91%), Postives = 161/246 (65.45%), Query Frame = 3 
Query:    6 QVANLLLEQGAMVNTSGGGLWTPLHYASDGQ--------ECPELVATLIHRGADIHAPDHHGRTPLHIACQRGSCDVALALLEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNATNCWGQIAGTLAPAYKMNPNPTSNRKQQGSVGQGLVRDERGGDGAGDASVPPCVACSARDGRHYYFCKNEILQELPESLILGPDGLPIVD 719
            +V +LLLE+GA  N SGGG WTPLHYA +G            +LV TL+    ++ A D +GRTPLH+AC +GS  VALALLEA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 P A NCWG++AGTLAP YKMNP               +V DE       DA   PC+ACSA  GRHYYFC++EILQELP+S++LGPDG P V+
Sbjct:   59 KVIDLLLERGAAANVSGGGFWTPLHYACNGPCRGTAAAAAAAKLVTTLVANHGEVDATDFYGRTPLHLACSKGSAAVALALLEAGAEPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERQSLAMSLLESAGADPGAKNCWGELAGTLAPDYKMNP---------------VVHDEE----HQDADTGPCIACSATKGRHYYFCRSEILQELPDSMVLGPDGKPRVE 285
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BLAST of mRNA_H-paniculata_contig14223.2564.1 vs. uniprot
Match: A0A6H5JVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF4_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.330e-39
Identity = 152/246 (61.79%), Postives = 172/246 (69.92%), Query Frame = 3 
Query:    6 QVANLLLEQGAMVNTSGGGLWTPLHYASDGQ--------ECPELVATLIHRGADIHAPDHHGRTPLHIACQRGSCDVALALLEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNATNCWGQIAGTLAPAYKMNPNPTSNRKQQGSVGQGLVRDERGGDGAGDASVPPCVACSARDGRHYYFCKNEILQELPESLILGPDGLPIVD 719
            +V  LLLE+GA  N SGGG WTPLHYA +G            ELV TL+    D+ A D +GRTPLH+AC +GS  VALA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      P A NCWG++AGTLAP YKMNP               +V DE       DA   PC+ACSA  GRHYYFC++E+LQ+LP+S++LGPDG P V+
Sbjct:   62 KVIELLLERGAAANVSGGGCWTPLHYACNGPCRGSAAATAAAELVTTLVENHGDVDATDFYGRTPLHLACSKGSAAVALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAGADPAAKNCWGELAGTLAPDYKMNP---------------VVHDEE----HQDADTGPCMACSATKGRHYYFCRSEVLQDLPDSMVLGPDGKPRVE 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14223.2564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQI7_ECTSI8.000e-4356.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVF4_9PHAE1.330e-3961.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14223contigH-paniculata_contig14223:1927..4607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue4e-34
Seed eggNOG ortholog2880.D7FQI7
Preferred nameANKRD42
KEGG koko:K06694,ko:K10329,ko:K17593
Hectar predicted targeting categoryother localisation
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-01_008830.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03051,ko04121
Exons2
Model size1409
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14223.2564.1prot_H-paniculata_contig14223.2564.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14223 1965..3923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.5008183-UTR-H-paniculata_contig14223:1926..19641622929132.5008183-UTR-H-paniculata_contig14223:1926..1964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14223 1927..1964 +
1691480743.4441018-UTR-H-paniculata_contig14223:1926..19641691480743.4441018-UTR-H-paniculata_contig14223:1926..1964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14223 1927..1964 +
1622929132.5505536-UTR-H-paniculata_contig14223:3923..46071622929132.5505536-UTR-H-paniculata_contig14223:3923..4607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14223 3924..4607 +
1691480743.4754887-UTR-H-paniculata_contig14223:3923..46071691480743.4754887-UTR-H-paniculata_contig14223:3923..4607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14223 3924..4607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.516031-CDS-H-paniculata_contig14223:1964..22341622929132.516031-CDS-H-paniculata_contig14223:1964..2234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14223 1965..2234 +
1691480743.456602-CDS-H-paniculata_contig14223:1964..22341691480743.456602-CDS-H-paniculata_contig14223:1964..2234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14223 1965..2234 +
1622929132.536022-CDS-H-paniculata_contig14223:3506..39231622929132.536022-CDS-H-paniculata_contig14223:3506..3923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14223 3507..3923 +
1691480743.4658515-CDS-H-paniculata_contig14223:3506..39231691480743.4658515-CDS-H-paniculata_contig14223:3506..3923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14223 3507..3923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14223.2564.1

>prot_H-paniculata_contig14223.2564.1 ID=prot_H-paniculata_contig14223.2564.1|Name=mRNA_H-paniculata_contig14223.2564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
MVNTSGGGLWTPLHYASDGQECPELVATLIHRGADIHAPDHHGRTPLHIA
CQRGSCDVALALLEASANANESDHDERTPVHYAASMGRHEIIALLLGFSA
DVSAADRELETPLHKATRGGYHRVMNLLQRAGADPNATNCWGQIAGTLAP
AYKMNPNPTSNRKQQGSVGQGLVRDERGGDGAGDASVPPCVACSARDGRH
YYFCKNEILQELPESLILGPDGLPIVDR*
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mRNA from alignment at H-paniculata_contig14223:1927..4607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14223.2564.1 ID=mRNA_H-paniculata_contig14223.2564.1|Name=mRNA_H-paniculata_contig14223.2564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2681bp|location=Sequence derived from alignment at H-paniculata_contig14223:1927..4607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATCAGGTAGCGAACCTGTTGCTCGAGCAAGGGGCCATGGTGAACACA
TCAGGCGGCGGGTTGTGGACACCTCTACACTATGCCAGCGACGGCCAAGA
GTGTCCCGAGCTCGTAGCGACGCTCATCCATCGGGGAGCCGACATACACG
CTCCCGACCACCATGGCCGTACCCCATTGCACATCGCTTGTCAGCGGGGG
TCTTGCGATGTGGCGCTTGCTCTCCTCGAGGCCAGTGCGAATGCCAACGA
ATCGGATCATGATGAGCGTACGCCGGTACACTACGCCGCTTCCATGGGAA
GGCATGAGGTGAATAAAGTATTATAGACGAGGGTGGGAGAAGCAGGGGGC
TCCCATATATTCGTCGGTAGAACTACCAGTGCACACGGTTTTGAGGATCG
ACAGCAATCTTGTCTAGAACGATGTTAATGCACGGATATAGGGCTCTACG
ATAACACGATTTGAAAAGGTACCATTCCAGTCTTGATGGAAAAAAACAAC
GAACCGAAGGTAGAAAAGAATCAATTATGTAATGTAGGAACACGAAAAAA
AGTGTAACATAAAATGGAGGCACGCTCAGTATTTTATAGCTGCTCGATTA
CTTATCCACAGAGAGAACAAACCAGAGGCAGGAAGCGTAGGGGTGCGTAG
GGGTGCGTATGACTTATTCGTCCAACGAAAGAAATGGGCTTCCTTTATGC
ACCTGCAGTATGAATACATATCAGACCCCTCATTTGTGGCGAGAGACTAG
TTGCATCCTTGTTCCGCGAAATTTTCGCTGATTAGAACGGATTTGCTCAA
CATTACTCATTTTCAAGTTCTTGCCATCCGCAACACCTCCTCAATAGTTA
CGGATGCTTCGATGACTATATAATGCTTAAACTGTGGACTGCAAGAATGA
TTTTTTTACACCAAGTGAACCTTGCAATCCGTTGTGAAACTCTGGCTGCA
GCCTCCAGTCATCGGTGTGCATATAAGAGAAAATAATCGCACAAGAAACT
CAGTGTAAACAGTGTTTCCAAGTACTGGCAGGATGTTTTACCTGGACTTC
GCTCCCGGCGACACACCGAGGAACGCCCGAGGCGCCACCGCCAGTATTCC
ATCCCCTTCGCCCTCCCCAGAGATCGATCAATGGACCATCCGGAGGCAAC
TAAATCGGCCCTCTAGTTTAATTTTCTCCAGTGTTGTTCAACTGGTTTAC
AGAAAGGAACAACACGAATCTAATTGAATTAACGCTTAATGAGATATACC
AGAATTGAAAAGTTCACCCGCAGGTATGACCGCAATATGTTTTTCTTTAG
GTCATGAAAAATTCGCTTGCAGTGTATCTTCACGTGCCTATCTTTTTTAC
AGACCATGATCACATTTCACCACCACATGTATGTAGGCGTCGATGGGTTG
AAAATTCGGTAATTGGACGGGAGCAGTAGGCAAACAAAAATCGTCATTAC
GTCTCCTATGTCCGTCTAGTAGCATCCCTCCCACCCTGTGCTTGCATGTC
TTACCTTCTCTTTCGCCTTCATCACGTCCGCTGCTGTGCTCTAACATGCG
GATTTCGTCATCGGTGGTATAACTACACAGATCATTGCTTTATTGTTAGG
CTTCAGCGCAGACGTGTCGGCGGCGGACCGAGAACTAGAGACGCCCCTCC
ACAAGGCTACCCGGGGGGGGTATCACAGGGTGATGAACCTTTTGCAAAGG
GCCGGCGCAGACCCCAACGCGACGAACTGCTGGGGGCAGATTGCGGGAAC
CTTGGCACCCGCGTACAAGATGAACCCAAACCCTACGAGTAATCGCAAAC
AACAAGGGAGTGTCGGGCAAGGGCTGGTGAGAGACGAGCGGGGGGGCGAT
GGTGCCGGCGATGCTAGTGTTCCTCCTTGTGTTGCTTGTTCTGCCAGAGA
CGGTCGACACTACTACTTCTGCAAAAATGAGATCTTGCAGGAGCTGCCGG
AGTCGCTGATCCTTGGACCGGATGGTCTCCCTATTGTCGACCGGTGATGA
GCGTGAGCGGTGGGGTGCTCGCGGTATGGGCTCCCCTCGCGTGCGTTTAC
GACAGTAGTGGGACGTTTGAACTGAAGGGGAGGGCCAACACGATGACAAG
CGCTATTTTTGGAGCTGGGTGTCATACTGATCCCTTGAGCTAAAGGTATA
GGTGAACCTAATATATATCACTTTAGGGTTCTCATAGGACCGTCCCCATC
ACACTCTCCCCCCTTGACGCCCACAGGATCCTAATGGCCCCCCGTTATGC
CACTAGTCGATATCCTCTACGGGGATTTCGGGTATTTTTGGGGGATGGGT
AGGAGTGTGAAGAGGAGAGATAACGGCGGGTTAAGTTCAGAAAAACAATA
ACGATTATGAAGAGTTGAATTCTAGTCCAATGCGACGCCAAGTGTCATAC
TAATCCCTTGAGCGAAAGGTATAGGTTAACCCGATATCCGTCCGCATCAC
GTAGGCGCCTAACTACTTCGAGTGCGGAGCTGAATTTTGGAACTGACATT
GCATCATGCTCAAGGTATCAAGAAAGCAACTGGCACGTTACGAAAAAGGT
GTATAATTGAATTCGCTACGCCCAAAAAATAGTTGCTCCGAAATGGTCCC
ATACAAAAACCAAGATAACTTGTCATCGATAATGGATATTTACACCCCCC
GTTTCAGGTGCGACGACTTAATATGTAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14223:1927..4607+

>mRNA_H-paniculata_contig14223.2564.1 ID=mRNA_H-paniculata_contig14223.2564.1|Name=mRNA_H-paniculata_contig14223.2564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig14223:1927..4607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAACACATCAGGCGGCGGGTTGTGGACACCTCTACACTATGCCAG
CGACGGCCAAGAGTGTCCCGAGCTCGTAGCGACGCTCATCCATCGGGGAG
CCGACATACACGCTCCCGACCACCATGGCCGTACCCCATTGCACATCGCT
TGTCAGCGGGGGTCTTGCGATGTGGCGCTTGCTCTCCTCGAGGCCAGTGC
GAATGCCAACGAATCGGATCATGATGAGCGTACGCCGGTACACTACGCCG
CTTCCATGGGAAGGCATGAGATGGTGAACACATCAGGCGGCGGGTTGTGG
ACACCTCTACACTATGCCAGCGACGGCCAAGAGTGTCCCGAGCTCGTAGC
GACGCTCATCCATCGGGGAGCCGACATACACGCTCCCGACCACCATGGCC
GTACCCCATTGCACATCGCTTGTCAGCGGGGGTCTTGCGATGTGGCGCTT
GCTCTCCTCGAGGCCAGTGCGAATGCCAACGAATCGGATCATGATGAGCG
TACGCCGGTACACTACGCCGCTTCCATGGGAAGGCATGAGATCATTGCTT
TATTGTTAGGCTTCAGCGCAGACGTGTCGGCGGCGGACCGAGAACTAGAG
ACGCCCCTCCACAAGGCTACCCGGGGGGGGTATCACAGGGTGATGAACCT
TTTGCAAAGGGCCGGCGCAGACCCCAACGCGACGAACTGCTGGGGGCAGA
TTGCGGGAACCTTGGCACCCGCGTACAAGATGAACCCAAACCCTACGAGT
AATCGCAAACAACAAGGGAGTGTCGGGCAAGGGCTGGTGAGAGACGAGCG
GGGGGGCGATGGTGCCGGCGATGCTAGTGTTCCTCCTTGTGTTGCTTGTT
CTGCCAGAGACGGTCGACACTACTACTTCTGCAAAAATGAGATCTTGCAG
GAGCTGCCGGAGTCGCTGATCCTTGGACCGGATGGTCTCCCTATTGTCGA
CCGGTGAATCATTGCTTTATTGTTAGGCTTCAGCGCAGACGTGTCGGCGG
CGGACCGAGAACTAGAGACGCCCCTCCACAAGGCTACCCGGGGGGGGTAT
CACAGGGTGATGAACCTTTTGCAAAGGGCCGGCGCAGACCCCAACGCGAC
GAACTGCTGGGGGCAGATTGCGGGAACCTTGGCACCCGCGTACAAGATGA
ACCCAAACCCTACGAGTAATCGCAAACAACAAGGGAGTGTCGGGCAAGGG
CTGGTGAGAGACGAGCGGGGGGGCGATGGTGCCGGCGATGCTAGTGTTCC
TCCTTGTGTTGCTTGTTCTGCCAGAGACGGTCGACACTACTACTTCTGCA
AAAATGAGATCTTGCAGGAGCTGCCGGAGTCGCTGATCCTTGGACCGGAT
GGTCTCCCTATTGTCGACCGGTGA
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