mRNA_H-paniculata_contig142.2552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig142.2552.1
Unique NamemRNA_H-paniculata_contig142.2552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.460e-38
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:  154 AAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGNPVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITLRVRVFVH 432
            AA YEVSP+G+P +LTAAL  AG GDTI L DGIYREP+VT+ AG EGNP+VIEGG DAV++ ++GD+ +MWSQKVVD+RHSW+TLR     H
Sbjct:   51 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANANAH 143
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BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.060e-36
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:  154 AAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGNPVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITLR 414
            AA YEVSP+G+P +LTAAL  AG GDTI L DGIYREP+VT+ AG EGNP+VIEGG DAVI+ ++GD+ +MWSQKVVD+RHSWITLR
Sbjct:   63 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTGDKSIMWSQKVVDIRHSWITLR 149
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BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Match: D8LJ28_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ28_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.200e-35
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:  154 AAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGNPVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITL 411
            AA+YEVSP+G P +LTAAL  AG GD I LADGIYREPIVT+ AG EGNP+VI GG  A+I+ FSGDR LMWSQKVVD+RHS++TL
Sbjct:   33 AAMYEVSPDGSPMTLTAALEVAGAGDIISLADGIYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 118
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BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 5.430e-33
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:  154 AAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGNPVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITLR 414
            AA YEVSP+G+P +L AAL  AG GDTI L DGIYREP+VT+ AG EGNP+VIEGG DAV++ ++GD+ +MWSQKVVD+RHSW+TLR
Sbjct:   78 AATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 164
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BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.770e-31
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:   85 RTAATALSVLTIAIALTLPLTVEAAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGNPVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITL 411
            +TA  A   L  A    L     AA+YEVSP+G P +LTAAL  AG GD + LADG YREPIVT+ AG EGNP+VI GG  A+I+ FSGDR LMWSQKVVD+RHS++TL
Sbjct:    9 KTAGVAALRLATAALAALATGTNAAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 117
[Close]
BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.030e-19
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  151 EAAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGNPVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITL 411
            +A  ++ SP+G PYS+ +ALA AG GDT+ LADG Y E IVTV  GE GNP++I GG DA+++A  GD       KVV V+HSW+TL
Sbjct:   12 DARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNA--GD-----DGKVVYVQHSWVTL 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig142.2552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHJ7_ECTSI3.460e-3866.67EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KG59_9PHAE1.060e-3672.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ28_ECTSI4.200e-3572.09EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJ42_ECTSI5.430e-3368.97FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K1D2_9PHAE4.770e-3160.55Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KT05_9PHAE2.030e-1954.02Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig142contigH-paniculata_contig142:36743..37198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929129.1857805-CDS-H-paniculata_contig142:36742..371981622929129.1857805-CDS-H-paniculata_contig142:36742..37198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig142 36743..37198 +
1691480742.4571548-CDS-H-paniculata_contig142:36742..371981691480742.4571548-CDS-H-paniculata_contig142:36742..37198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig142 36743..37198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig142.2552.1prot_H-paniculata_contig142.2552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig142 36743..37198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig142.2552.1

>prot_H-paniculata_contig142.2552.1 ID=prot_H-paniculata_contig142.2552.1|Name=mRNA_H-paniculata_contig142.2552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MTTVTDLRHEQQEHKEQQRQHDTRTIPARTAATALSVLTIAIALTLPLTV
EAAVYEVSPEGEPYSLTAALATAGPGDTIYLADGIYREPIVTVVAGEEGN
PVVIEGGSDAVISAFSGDRDLMWSQKVVDVRHSWITLRVRVFVHISIVSS
R*
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mRNA from alignment at H-paniculata_contig142:36743..37198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig142.2552.1 ID=mRNA_H-paniculata_contig142.2552.1|Name=mRNA_H-paniculata_contig142.2552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig142:36743..37198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACCGTGACCGACCTTCGACACGAGCAGCAGGAGCACAAGGAGCA
ACAGCGGCAACATGATACAAGAACAATCCCTGCTCGCACTGCAGCTACTG
CTTTAAGTGTTCTAACCATAGCCATCGCCCTCACCCTACCGCTCACAGTC
GAGGCCGCTGTGTACGAGGTCTCCCCAGAGGGTGAACCCTACTCGCTCAC
CGCAGCCCTAGCCACAGCTGGGCCGGGTGACACCATATATTTGGCAGACG
GTATTTACCGCGAGCCAATTGTAACGGTAGTCGCGGGTGAGGAAGGCAAC
CCTGTGGTAATCGAGGGTGGGTCAGATGCAGTGATCAGTGCGTTCAGCGG
AGATAGAGACTTAATGTGGTCTCAGAAGGTGGTCGACGTGCGGCATTCAT
GGATCACTCTGCGGGTAAGAGTCTTTGTGCATATTTCAATCGTGAGTAGT
CGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig142:36743..37198+

>mRNA_H-paniculata_contig142.2552.1 ID=mRNA_H-paniculata_contig142.2552.1|Name=mRNA_H-paniculata_contig142.2552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig142:36743..37198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACCGTGACCGACCTTCGACACGAGCAGCAGGAGCACAAGGAGCA
ACAGCGGCAACATGATACAAGAACAATCCCTGCTCGCACTGCAGCTACTG
CTTTAAGTGTTCTAACCATAGCCATCGCCCTCACCCTACCGCTCACAGTC
GAGGCCGCTGTGTACGAGGTCTCCCCAGAGGGTGAACCCTACTCGCTCAC
CGCAGCCCTAGCCACAGCTGGGCCGGGTGACACCATATATTTGGCAGACG
GTATTTACCGCGAGCCAATTGTAACGGTAGTCGCGGGTGAGGAAGGCAAC
CCTGTGGTAATCGAGGGTGGGTCAGATGCAGTGATCAGTGCGTTCAGCGG
AGATAGAGACTTAATGTGGTCTCAGAAGGTGGTCGACGTGCGGCATTCAT
GGATCACTCTGCGGGTAAGAGTCTTTGTGCATATTTCAATCGTGAGTAGT
CGGTGAATGACAACCGTGACCGACCTTCGACACGAGCAGCAGGAGCACAA
GGAGCAACAGCGGCAACATGATACAAGAACAATCCCTGCTCGCACTGCAG
CTACTGCTTTAAGTGTTCTAACCATAGCCATCGCCCTCACCCTACCGCTC
ACAGTCGAGGCCGCTGTGTACGAGGTCTCCCCAGAGGGTGAACCCTACTC
GCTCACCGCAGCCCTAGCCACAGCTGGGCCGGGTGACACCATATATTTGG
CAGACGGTATTTACCGCGAGCCAATTGTAACGGTAGTCGCGGGTGAGGAA
GGCAACCCTGTGGTAATCGAGGGTGGGTCAGATGCAGTGATCAGTGCGTT
CAGCGGAGATAGAGACTTAATGTGGTCTCAGAAGGTGGTCGACGTGCGGC
ATTCATGGATCACTCTGCGGGTAAGAGTCTTTGTGCATATTTCAATCGTG
AGTAGTCGGTGA
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