mRNA_H-paniculata_contig14183.2540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14183.2540.1
Unique NamemRNA_H-paniculata_contig14183.2540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14183.2540.1 vs. uniprot
Match: D7G2K1_ECTSI (Alpha,alpha-trehalose-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 5.880e-29
Identity = 69/100 (69.00%), Postives = 82/100 (82.00%), Query Frame = 2 
Query:  977 MADVGGHGLDLPINTFSCTVGLKLSQANYYIKSSLAAAALCKELSQVKEKEEFSNLEDYEDPAAGVHLQYAVANTGTSSTDPPHSRSDGDIANLAIVMSS 1276
            M D+G +GLDLPINTFSCTVGLKLSQANYYIKSS AAAALCKELSQVK+KE++ + E YED  AGV++QYAVAN   ++  PPH+ S  +IA+L IVM S
Sbjct:  633 MGDIGVNGLDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKELSQVKDKEDYGSFEGYED-GAGVYVQYAVANQQGAAKAPPHTSSASNIADLDIVMGS 731
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BLAST of mRNA_H-paniculata_contig14183.2540.1 vs. uniprot
Match: A0A6H5JHQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.070e-27
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 2 
Query:  977 MADVGGHGLDLPINTFSCTVGLKLSQANYYIKSSLAAAALCKE-----LSQVKEKEEFSNLEDYEDPAAGVHLQYAVANTGTSSTDPPHSRSDGDIANLAIVMSS 1276
            M DVG +GLDLPINTFSCTVGLKLSQANYYIKSS AAAALCKE     LSQVK+KE++ + E YED  AGV++QYAVAN   ++  PPH+ S  +IA+L IVM S
Sbjct: 1209 MGDVGVNGLDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKEAIVGPLSQVKDKEDYGSFEGYED-GAGVYVQYAVANQQGAAKAPPHTSSASNIADLDIVMGS 1312
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BLAST of mRNA_H-paniculata_contig14183.2540.1 vs. uniprot
Match: A0A836CNA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.430e-6
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  998 GLDLPINTFSCTVGLKLSQANYYIKSSLAAAALCKELS 1111
            GLDLPINTFSCTVGLK+SQA YYIKS  A  AL K+LS
Sbjct:  361 GLDLPINTFSCTVGLKVSQAQYYIKSRQAVGALLKDLS 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14183.2540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2K1_ECTSI5.880e-2969.00Alpha,alpha-trehalose-phosphate synthase n=1 Tax=E... [more]
A0A6H5JHQ0_9PHAE7.070e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CNA9_9STRA3.430e-678.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14183contigH-paniculata_contig14183:1938..5346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1414
Cds size1275
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14183.2540.1prot_H-paniculata_contig14183.2540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14183 1975..5244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.7138288-UTR-H-paniculata_contig14183:1937..19741622929127.7138288-UTR-H-paniculata_contig14183:1937..1974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14183 1938..1974 +
1691480741.584581-UTR-H-paniculata_contig14183:1937..19741691480741.584581-UTR-H-paniculata_contig14183:1937..1974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14183 1938..1974 +
1622929127.7908804-UTR-H-paniculata_contig14183:5244..53461622929127.7908804-UTR-H-paniculata_contig14183:5244..5346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14183 5245..5346 +
1691480741.6405776-UTR-H-paniculata_contig14183:5244..53461691480741.6405776-UTR-H-paniculata_contig14183:5244..5346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14183 5245..5346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.7282195-CDS-H-paniculata_contig14183:1974..27491622929127.7282195-CDS-H-paniculata_contig14183:1974..2749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 1975..2749 +
1691480741.5980349-CDS-H-paniculata_contig14183:1974..27491691480741.5980349-CDS-H-paniculata_contig14183:1974..2749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 1975..2749 +
1622929127.745601-CDS-H-paniculata_contig14183:3044..32241622929127.745601-CDS-H-paniculata_contig14183:3044..3224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 3045..3224 +
1691480741.6070855-CDS-H-paniculata_contig14183:3044..32241691480741.6070855-CDS-H-paniculata_contig14183:3044..3224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 3045..3224 +
1622929127.764418-CDS-H-paniculata_contig14183:3727..38401622929127.764418-CDS-H-paniculata_contig14183:3727..3840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 3728..3840 +
1691480741.6155448-CDS-H-paniculata_contig14183:3727..38401691480741.6155448-CDS-H-paniculata_contig14183:3727..3840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 3728..3840 +
1622929127.7793639-CDS-H-paniculata_contig14183:5037..52441622929127.7793639-CDS-H-paniculata_contig14183:5037..5244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 5038..5244 +
1691480741.6248214-CDS-H-paniculata_contig14183:5037..52441691480741.6248214-CDS-H-paniculata_contig14183:5037..5244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14183 5038..5244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14183.2540.1

>prot_H-paniculata_contig14183.2540.1 ID=prot_H-paniculata_contig14183.2540.1|Name=mRNA_H-paniculata_contig14183.2540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MLSRGGGGEGDVGAAAAGGEDNEVIGSLVSGVVDDTPSEDGKGSSGSGNN
NNRKMAASAMPPAPHANSVAAIATQRQPQYSPELGDKDGRRKMSHISGHA
QGAGSEDSGSIIYPDRERAEEDHGAAFLPVSADGESLAPEQVDRSTGRPR
VGLLAVVADEARGDEDEATTIAATPVTAKGRMAVGRVVAAENVGDTGALG
DERDWVDKAAIWKRDDDNDDDDGDNEGEEEEGEVAAAGATVKRVETTGGD
LPEQRPVSGDAAAAAVPTPVETETSQPWMSGAGFGREGRGRRDRELNTKD
SHEKVRTRSRSHSMADVGGHGLDLPINTFSCTVGLKLSQANYYIKSSLAA
AALCKELSQVKEKEEFSNLEDYEDPAAGVHLQYAVANTGTSSTDPPHSRS
DGDIANLAIVMSSHVNKMKCGACS*
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mRNA from alignment at H-paniculata_contig14183:1938..5346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14183.2540.1 ID=mRNA_H-paniculata_contig14183.2540.1|Name=mRNA_H-paniculata_contig14183.2540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3409bp|location=Sequence derived from alignment at H-paniculata_contig14183:1938..5346+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATAGCGGCGGTCATCGCATCAAGTCGGTGCCGAGCATGTTGTCGAGAG
GTGGGGGTGGAGAGGGAGACGTAGGGGCAGCGGCGGCGGGAGGTGAAGAC
AACGAAGTAATTGGTTCGTTGGTATCCGGGGTGGTGGACGATACGCCAAG
CGAAGATGGCAAGGGTAGCAGTGGCAGTGGCAACAACAATAATAGGAAAA
TGGCGGCATCTGCTATGCCTCCTGCTCCTCATGCCAATTCTGTCGCCGCC
ATTGCTACACAGCGGCAGCCGCAGTACTCGCCAGAACTGGGAGACAAGGA
CGGGAGGAGGAAAATGTCGCACATATCAGGACACGCGCAGGGAGCAGGGA
GCGAGGATAGTGGCAGTATTATCTACCCTGACAGAGAGCGAGCTGAGGAA
GACCACGGTGCCGCGTTTCTGCCCGTGTCTGCCGACGGAGAAAGCTTGGC
GCCGGAACAAGTCGACCGCTCAACCGGGCGACCCAGAGTTGGATTATTGG
CAGTGGTTGCCGACGAAGCGCGGGGTGATGAGGATGAGGCGACGACTATT
GCTGCCACACCGGTCACGGCCAAGGGACGGATGGCAGTTGGTCGAGTTGT
CGCCGCGGAGAATGTTGGCGATACGGGTGCGTTGGGTGACGAGCGAGACT
GGGTTGACAAGGCGGCTATTTGGAAGCGCGACGATGATAATGATGATGAT
GATGGTGATAACGAGGGGGAGGAGGAGGAGGGGGAAGTGGCGGCAGCAGG
GGCAACAGTAAAAAGAGTGGAGACTACAGGGGGCGATTTGCCCGAACAGC
GGCCAGTATCCGGTGAGCGACTTATTTCGTGTTTTTTGTTTGCTTCGTTC
TCGTGCTCGTTTGTGAGAGTTCTCTTCTTTCTTTTTTTCTTTCTTTTCTT
TTTTTTTCTTTTCAACGTTTTTGCCGTCTTCATTTTGCTCTGCGGAGGAC
ATTATATTAGAAAAATCCTGGCTAGACATCCGCAGGCCCGCGATATCCCC
CCCCCGATTACCGACTAACGAATACACAAGCGAGATCCATGTAGAGATTT
CCGTATACCACTTGATTCGCCATATCTTCATGTTCCTATTTTCCCGCACA
CCATAAGGAGATGCAGCAGCAGCAGCAGTACCAACACCGGTCGAAACAGA
AACATCGCAGCCCTGGATGTCAGGAGCCGGTTTCGGGCGCGAGGGCCGCG
GTCGTCGAGACCGAGAGTTGAACACCAAAGACTCCCACGAGAAAGTGCGC
ACGCGAAGCCGGTCACACTCCATGGCAGACGTTGGAGGCAAGTCAAATCC
GTTGTGGTCGGCGCGACTGACTGTACAGACTGTCAACCGGTTTATTTATT
TTGTGTATTTTACGTTCGTGAACCGAAGGTTTGGTCAACTATTAATAGTA
CGCTCGCAGGGTCAAGGGCCACGGGGTTGAAGGGACGCAGGGTTCTCGTC
TCGCCGGGAGGGGAGGAAGGTATTAAGTTAACAAATAAGGGGTACATCCG
TTGTGTGGGTTGGCTTTAAATCTGCGTGTATGTATTATGTTTTTTTGCAG
GTGTCGCGTGTGTTGCTCTTGGCCTGCAAGACCCCTGTTTTTCGAATTGT
TTTTGCTGTGATACCGTGTAGCTGTGTCGGGAAAAGAAACAACACTGCAT
TTTCATACTTGAGTTGAAGTCGTCTAACGATCAGTGCGAACTGACGTGAT
CGATTCCACCATAGCGTTGTGTGCATGTAACCCAATCCCCGACATGTATA
TAAATACATATTTATTTATTTTGCATTTTTGCTGTCACAGGTCACGGGTT
GGATTTGCCCATTAATACGTTCTCGTGCACTGTGGGCCTGAAGCTGAGCC
AGGCCAACTACTACATCAAGAGCAGCTTAGCCGCGGCGGCTTTGTGCAAA
GAGGTATGTAGACGGATCAGTGTTTTATGTTCATATGCAAGAGCAGTTCG
CTGGGGCACAGACGCGGAAAGGGACCCTAAGCGTGCTAAATCTTTGATGA
GAGATGGTGAAGATGAACATGGTGTATGAAGGACTTTCAAACTATGACCT
AAACGGAGGCCAACATACATGAGAAAAAAATTATACTTGACACGAAATTC
TCTCCTCAGCCGCATGTTAATATGATAGCGCTAGCTGTTAGGATCTAGAG
TTAATACGCATTACGACGATAGTTACTGGCATGTTCGACTTCCTTCCTTG
ACGGAATGGGGGAGGAAGCATACTTATATTTCGCTTGTCGAACTTCTTAT
ACGATTGACCAGGTGTATTCGGGAGGACGGAGCCGGGCGGGGGGTGGGGC
TCATTCGTAACCCAAGCCACTTGCCACAGTTAGTACAATTAAGGAGTTGT
AGCTCTAACGCTTATATATTATTTACAGACTCCACTGTACCCATGTTGAG
GTTATTTAGCTGCCCTGAAACGTGAATTGTGTATGTTTTTGAACAAAATT
AGATAGGGAAGGACCTCGCACCGTCAACGAGCAATACATGAGGTCTTGAC
AGGCCAAACGCGTGCAGGTAGTGCATGATTCGCGACCAATAGCACACATA
TATTGAACAGACAGATACGACGCAAAGCTTGTTGCGGCCGCAGATACAGC
TGGCTGGACAGCGAAAGGGTTCCACTGAGCACCCATCACCAAAGGTCCCG
GGGGGGGAAGAGAGGGTATCTCAGCCCAAGAAAAGGAAAGCCATTGAACA
ATGAGCGCGGCAGCAGTAAATACACACAGCTTTCCGAGTTGCTGATATTT
CAGGCGTCGGGTAACTCCCGGACTGTATTGGCCAATCGTGTGGCATGGAT
GACCAAAAATGACCACTTGAGATTAGAATTTCGTACTTGATGCTTTGTTC
GGTAGTTTTTTTAATAGAGATTTCATTGTTTCAATATTCGCCAGAGCGCT
TCCGCAGGTAGTAATTTTAAAGGGGTGGAAAAAACAACAACTAATTTCAA
CAAAGGATATGTTCCTCTTTTTGCGCAAAACGTGTTTGTATTTGTTTTTT
TTTTCGCTTTTTCGTTTTTTCGTGCTTGCATTTTCCGGGGGAACGCTTTG
CCGATTTACTACTTACTGCTTGCTGTACGTCGCAATAAAATATAATGCAG
CTGAGTCAAGTAAAGGAGAAGGAAGAATTCAGCAACCTGGAAGACTATGA
GGACCCTGCAGCGGGAGTGCACCTGCAGTACGCCGTTGCCAACACGGGAA
CGTCGTCGACCGATCCCCCCCACTCTCGGTCCGACGGCGACATCGCTAAC
CTTGCGATCGTCATGAGCTCGCATGTAAATAAAATGAAATGCGGTGCATG
TTCATAGCCTACTATTAATAGTTCAAATGTGTAATAAAACTACGATGCTG
TCAAATCTTTGATTATGCTGTCAAAACGCTTATACTTTCGAGAAGTATGT
GTTTGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14183:1938..5346+

>mRNA_H-paniculata_contig14183.2540.1 ID=mRNA_H-paniculata_contig14183.2540.1|Name=mRNA_H-paniculata_contig14183.2540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at H-paniculata_contig14183:1938..5346+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTCGAGAGGTGGGGGTGGAGAGGGAGACGTAGGGGCAGCGGCGGC
GGGAGGTGAAGACAACGAAGTAATTGGTTCGTTGGTATCCGGGGTGGTGG
ACGATACGCCAAGCGAAGATGGCAAGGGTAGCAGTGGCAGTGGCAACAAC
AATAATAGGAAAATGGCGGCATCTGCTATGCCTCCTGCTCCTCATGCCAA
TTCTGTCGCCGCCATTGCTACACAGCGGCAGCCGCAGTACTCGCCAGAAC
TGGGAGACAAGGACGGGAGGAGGAAAATGTCGCACATATCAGGACACGCG
CAGGGAGCAGGGAGCGAGGATAGTGGCAGTATTATCTACCCTGACAGAGA
GCGAGCTGAGGAAGACCACGGTGCCGCGTTTCTGCCCGTGTCTGCCGACG
GAGAAAGCTTGGCGCCGGAACAAGTCGACCGCTCAACCGGGCGACCCAGA
GTTGGATTATTGGCAGTGGTTGCCGACGAAGCGCGGGGTGATGAGGATGA
GGCGACGACTATTGCTGCCACACCGGTCACGGCCAAGGGACGGATGGCAG
TTGGTCGAGTTGTCGCCGCGGAGAATGTTGGCGATACGGGTGCGTTGGGT
GACGAGCGAGACTGGGTTGACAAGGCGGCTATTTGGAAGCGCGACGATGA
TAATGATGATGATGATGGTGATAACGAGGGGGAGGAGGAGGAGGGGGAAG
TGGCGGCAGCAGGGGCAACAGTAAAAAGAGTGGAGACTACAGGGGGCGAT
TTGCCCGAACAGCGGCCAGTATCCGATGTTGTCGAGAGGTGGGGGTGGAG
AGGGAGACGTAGGGGCAGCGGCGGCGGGAGGTGAAGACAACGAAGTAATT
GGTTCGTTGGTATCCGGGGTGGTGGACGATACGCCAAGCGAAGATGGCAA
GGGTAGCAGTGGCAGTGGCAACAACAATAATAGGAAAATGGCGGCATCTG
CTATGCCTCCTGCTCCTCATGCCAATTCTGTCGCCGCCATTGCTACACAG
CGGCAGCCGCAGTACTCGCCAGAACTGGGAGACAAGGACGGGAGGAGGAA
AATGTCGCACATATCAGGACACGCGCAGGGAGCAGGGAGCGAGGATAGTG
GCAGTATTATCTACCCTGACAGAGAGCGAGCTGAGGAAGACCACGGTGCC
GCGTTTCTGCCCGTGTCTGCCGACGGAGAAAGCTTGGCGCCGGAACAAGT
CGACCGCTCAACCGGGCGACCCAGAGTTGGATTATTGGCAGTGGTTGCCG
ACGAAGCGCGGGGTGATGAGGATGAGGCGACGACTATTGCTGCCACACCG
GTCACGGCCAAGGGACGGATGGCAGTTGGTCGAGTTGTCGCCGCGGAGAA
TGTTGGCGATACGGGTGCGTTGGGTGACGAGCGAGACTGGGTTGACAAGG
CGGCTATTTGGAAGCGCGACGATGATAATGATGATGATGATGGTGATAAC
GAGGGGGAGGAGGAGGAGGGGGAAGTGGCGGCAGCAGGGGCAACAGTAAA
AAGAGTGGAGACTACAGGGGGCGATTTGCCCGAACAGCGGCCAGTATCCG
GAGATGCAGCAGCAGCAGCAGTACCAACACCGGTCGAAACAGAAACATCG
CAGCCCTGGATGTCAGGAGCCGGTTTCGGGCGCGAGGGCCGCGGTCGTCG
AGACCGAGAGTTGAACACCAAAGACTCCCACGAGAAAGTGCGCACGCGAA
GCCGGTCACACTCCATGGCAGACGTTGGAGGAGATGCAGCAGCAGCAGCA
GTACCAACACCGGTCGAAACAGAAACATCGCAGCCCTGGATGTCAGGAGC
CGGTTTCGGGCGCGAGGGCCGCGGTCGTCGAGACCGAGAGTTGAACACCA
AAGACTCCCACGAGAAAGTGCGCACGCGAAGCCGGTCACACTCCATGGCA
GACGTTGGAGGTCACGGGTTGGATTTGCCCATTAATACGTTCTCGTGCAC
TGTGGGCCTGAAGCTGAGCCAGGCCAACTACTACATCAAGAGCAGCTTAG
CCGCGGCGGCTTTGTGCAAAGAGGTCACGGGTTGGATTTGCCCATTAATA
CGTTCTCGTGCACTGTGGGCCTGAAGCTGAGCCAGGCCAACTACTACATC
AAGAGCAGCTTAGCCGCGGCGGCTTTGTGCAAAGAGCTGAGTCAAGTAAA
GGAGAAGGAAGAATTCAGCAACCTGGAAGACTATGAGGACCCTGCAGCGG
GAGTGCACCTGCAGTACGCCGTTGCCAACACGGGAACGTCGTCGACCGAT
CCCCCCCACTCTCGGTCCGACGGCGACATCGCTAACCTTGCGATCGTCAT
GAGCTCGCATGTAAATAAAATGAAATGCGGTGCATGTTCATAGCTGAGTC
AAGTAAAGGAGAAGGAAGAATTCAGCAACCTGGAAGACTATGAGGACCCT
GCAGCGGGAGTGCACCTGCAGTACGCCGTTGCCAACACGGGAACGTCGTC
GACCGATCCCCCCCACTCTCGGTCCGACGGCGACATCGCTAACCTTGCGA
TCGTCATGAGCTCGCATGTAAATAAAATGAAATGCGGTGCATGTTCATAG
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