mRNA_H-paniculata_contig14096.2499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14096.2499.1
Unique NamemRNA_H-paniculata_contig14096.2499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 5.190e-54
Identity = 125/338 (36.98%), Postives = 187/338 (55.33%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLISTKEPK-------IMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASE--EAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKHVN 1238
            D CVFR I +  VV  ++++VDD+    +E +       + T   +K++G++ +Y      RD     +KI Q  YA  +   FG+     +P   G          K SE  + EE+ +   RE +G L+  AT TRPDIA+AVR   + C  P   H RA + IL Y++R++DLGIT+  G    + M  + ++DYA+    RRSVSGG+V+ GGG ISW +R ++  T  TT A++V+LA+ + EVL LRQV  F++P      + + ED QGA ++A N  S+   +HI+V+HH +R+ V   ++ I  +    QH D LTKAL    FE H N
Sbjct:  104 DTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL---------KLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRN 432          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.560e-52
Identity = 125/338 (36.98%), Postives = 187/338 (55.33%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLISTKEPK-------IMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASE--EAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKHVN 1238
            D CVFR I +  VV  ++++VDD+    +E +       + T   +K++G++ +Y      RD     +KI Q  YA  +   FG+     +P   G          K SE  + EE+ +   RE +G L+  AT TRPDIA+AVR   + C  P   H RA + IL Y++R++DLGIT+  G    + M  + ++DYA+    RRSVSGG+V+ GGG ISW +R ++  T  TT A++V+LA+ + EVL LRQV  F++P      + + ED QGA ++A N  S+   +HI+V+HH +R+ V   ++ I  +    QH D LTKAL    FE H N
Sbjct:  278 DTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL---------KLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRN 606          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 8.520e-51
Identity = 120/329 (36.47%), Postives = 184/329 (55.93%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLISTKEPK-------IMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASE--EAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGK-VDIVCMGVGEQHVDVLTKAL 1208
            D CVFR I +  VV  ++++VDD+    +E +       + T  ++K++G++ +Y      RD     +KI Q  YA  +   FG+     +P   G          K SE  + EE+ +   RE +G L+  AT TRPDIA+AVR   + C  P   H RA + IL Y++R++D GIT+  G    + M  + ++DYA+    RRSVSGG+V+ GGG ISW +R ++  T  TT A++V+LA+ + EVL LRQV  F++P      + + ED QGA ++A N  S+  ++HI+V+HH +R+ V   K + I  +    QH D LT+AL
Sbjct:    3 DTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGM---------KLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRAL 322          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.030e-50
Identity = 124/338 (36.69%), Postives = 187/338 (55.33%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLISTKEPK-------IMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASE--EAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKHVN 1238
            D CVFR I +  VV  ++++VDD+    +E +       + T   +K++G++ +Y      RD     +KI Q  YA  +   FG+     +P   G          K SE  + EE+ +   RE +G L+  AT TRPDIA+AVR   + C  P   H RA + IL Y++R++DLGIT+  G    + M  + ++DYA+    RRSVSGG+V+ GGG ISW +R ++  T  TT A++V+LA+ + EVL LRQV  F++P      + + ED QGA ++A N  S+   +HI+V+HH +R+ V   ++ I  +    QH + LTKAL    FE H N
Sbjct:  799 DTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL---------KLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRN 1127          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.920e-50
Identity = 116/336 (34.52%), Postives = 187/336 (55.65%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLL-ISTKEPKIMTNHKL------KDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGIT--KTSMLPATAGNNTMIKNDGPKASEEAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKH 1232
            D CVFR + +  V+ +I+++VDD+  +  KE        L      K++G + +Y      RD +   ++I Q  +A  +A  +GI   ++  LP +       +N+   AS +         RE VG L+  AT TRPDIA+AVR   + C  P + H +A + IL Y+ R++ +GIT+  G    + M  + ++DYA+    RRSVSGG+V+ GGG ++W +R ++  T  TT A++VA+A+ + EVL LRQV  F++P      + + ED QGA ++ HN  ++   +HI+V+HH +R+ VE  ++ I  +    QH D LTKA+ + SF  H
Sbjct:   42 DACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENE---ASADVP------FRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALH 368          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A0A9X648_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X648_LYGHE)

HSP 1 Score: 184 bits (466), Expect = 8.990e-50
Identity = 110/333 (33.03%), Postives = 187/333 (56.16%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLISTKEP--------KIMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAG-NNTMIKNDGPKASEEAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYGG-QDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSF 1223
            D CV+ K VD +V+ ++  YV+DLLI + +         ++M   ++ D+G   + L F +TRDR ++K+ I Q  Y   M +RF + + + +      N  + K   P ++E+A +M     +EAVG L+ A+ ++RPDI  AV   ++  ++PG AH  AV +IL Y+  SA   + +GG  +   +++ Y++SD+A+ +D RRSV+G + +  G  ISW T+ +      TT A+++A +  V E L LR + A + P+  + P +I  D QGA+ +A N     R +HI+V+HH VR+ +  G++ +  +   E   D LTK+L+R   
Sbjct:  105 DSCVYFKFVDSQVL-IVACYVEDLLILSNDKVMKNKLKEQLMKTFQMTDLGEANFVLGFKLTRDRAKKKVWISQERYISDMLKRFNMHECNPVDTPLSPNEKLSKEQSPVSAEDAAKMKNVPYQEAVGSLLFASQVSRPDINFAVSYVSRFSKNPGTAHWGAVKRILRYLKGSAHWKLEFGGGMEVVTDIVGYSDSDWASDQDERRSVTGYIFMKNGSPISWSTKKQPTIALSTTEAEYMATSAAVQEALWLRGLAAEMFPSSTFKPTLIYVDNQGAQNLAINGAYQARTKHIDVRHHFVRERINNGEIKLQHVSTKEMVADSLTKSLDREKL 436          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 4.040e-49
Identity = 116/335 (34.63%), Postives = 191/335 (57.01%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLIS-TKEPKIMTNHKL------KDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASEEAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYGGQDCEVEM--LAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKH 1232
            DPCV R ++  EV+ +  I+VDD+L + TK    +    L      K++G V ++L   I+RDR+   I+I Q  Y R++ ERF I +TS +PA+  N++       ++  E EE      RE VG L+  A  TRP+ ++AVR   ++  +P  +  +A  KIL Y+  +A L + Y  QD  V++  L Y ++D+A+    RRSVSG +VL+ G  +SW +  ++  +  T+ A+++A+ + V E   +  +  F+ P+ +   + + ED +GA  +A N  SS R +HI+V+HH +R+  E G +++  +   EQH D+LTKAL R+ FE H
Sbjct:   50 DPCVLRFMMGDEVMGIFAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDS-------RSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYK-QDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFH 376          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 4.050e-49
Identity = 112/334 (33.53%), Postives = 185/334 (55.39%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLLISTKEPK-------IMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASEEAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYGGQDCE-VEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKH 1232
            D CVFR I D  VV +++++VDD+    +  +       +  +  +K++G + +Y      R+++  ++ I Q  +   +A  +G+     +P ++G    +K     A E A E      RE VG L+  AT TRPDIA+AVR   + C  P + H  A + IL Y  R++  GI++     E   +  Y ++D+A+    RRSVSGG+V  GGGA+SW +R ++  T  TT A++VAL + V E+L LRQ+  F++P +    + + ED QGA ++A N  S+   +HI+V+HH +R+ VE  ++ ++ +    Q  D LTK+L + +FE H
Sbjct:  128 DACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSG----VKLSDFDADEVATEFPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESH 454          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.290e-48
Identity = 116/337 (34.42%), Postives = 186/337 (55.19%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLL-ISTKEPKIMTNHKL------KDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGIT--KTSMLPATAGNNTMIKNDGPKASEEAEEMWASL-CREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVIIKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKH 1232
            D CVFR + +  V+ +I+++VDD+  +  KE        L      K++G + +Y      RD +   ++I Q  +A  +A  +GI   ++  LP +       +N          E  A +  RE VG L+  AT TRPDIA+AVR   + C  P + H +A + IL Y+ R++ +GIT+  G    + M  + ++DYA+    RRSVSGG+V+ GGG ++W +R ++  T  TT A++VA+A+ + EVL LRQV  F++P      + + ED QGA ++AHN  ++   +HI+V+HH +R+ VE  ++ I  +    QH D LTKA+ + S   H
Sbjct:  104 DACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDEN----------EACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLH 430          
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.450e-48
Identity = 116/335 (34.63%), Postives = 185/335 (55.22%), Query Frame = 3
Query:  255 DPCVFRKIVDREVVAVIIIYVDDLL-ISTKEPKIMTNHKL------KDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKTSMLPATAGNNTMIKNDGPKASEEAEEMWASLCREAVGVLICAATITRPDIAHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYG-GQDCEVEMLAYTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*AKHVALAETVNEVLLLRQVQAFIMPTLEYYPVI-IKEDTQGAEKMAHNKHSSRRMRHIEVKHHIVRDEVEAGKVDIVCMGVGEQHVDVLTKALERSSFEKH 1232
            D CVFR + D EVV +++++VDD+  + TKE        L      K +G + +Y   +  RDR+  ++ I Q  Y + + ER G+     +P      T    D        E  + +L    +G L+  A +TRPDIA+AVR   + C +P + H RA + IL Y +R++  GI++  G      ++ + ++DYA+    RRSVSGGVV+  GGAI+W ++ ++  T  TT A++VA+A+   E+L LR+V  F++P  E  P I + ED +GA ++A +  S+   +HI+V+HH +R  V+  +V+I+ +    QH D LTKAL    F  H
Sbjct:   50 DSCVFRLVEDGEVVLILVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPT---TWRLWDSDVNEPSVEYPFRAL----IGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPK-ELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFH 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14096.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE5.190e-5436.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.560e-5236.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE8.520e-5136.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2R1_9PHAE2.030e-5036.69Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L4G9_9PHAE2.920e-5034.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9X648_LYGHE8.990e-5033.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JRE7_9PHAE4.040e-4934.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE4.050e-4933.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.290e-4834.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE1.450e-4834.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14096contigH-paniculata_contig14096:130..1391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score128.6
Seed ortholog evalue3.9e-27
Seed eggNOG ortholog161934.XP_010676254.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3894V@33090,3GY0Z@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1244
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14096.2499.1prot_H-paniculata_contig14096.2499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14096 330..1079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.4359705-UTR-H-paniculata_contig14096:129..3291622929122.4359705-UTR-H-paniculata_contig14096:129..329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14096 130..329 +
1691480739.462572-UTR-H-paniculata_contig14096:129..3291691480739.462572-UTR-H-paniculata_contig14096:129..329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14096 130..329 +
1622929122.474841-UTR-H-paniculata_contig14096:1079..13911622929122.474841-UTR-H-paniculata_contig14096:1079..1391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14096 1080..1391 +
1691480739.4931796-UTR-H-paniculata_contig14096:1079..13911691480739.4931796-UTR-H-paniculata_contig14096:1079..1391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14096 1080..1391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.447913-CDS-H-paniculata_contig14096:329..4891622929122.447913-CDS-H-paniculata_contig14096:329..489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14096 330..489 +
1691480739.4741662-CDS-H-paniculata_contig14096:329..4891691480739.4741662-CDS-H-paniculata_contig14096:329..489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14096 330..489 +
1622929122.4635496-CDS-H-paniculata_contig14096:507..10791622929122.4635496-CDS-H-paniculata_contig14096:507..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14096 508..1079 +
1691480739.4836617-CDS-H-paniculata_contig14096:507..10791691480739.4836617-CDS-H-paniculata_contig14096:507..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14096 508..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14096.2499.1

>prot_H-paniculata_contig14096.2499.1 ID=prot_H-paniculata_contig14096.2499.1|Name=mRNA_H-paniculata_contig14096.2499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MLEYEGYRGPHGESVRAIDPCVFRKIVDREVVAVIIIYVDDLLISTKEPK
IMTNHKLKDVGNVGYYLVFHITRDRKERKIKIDQHLYARSMAERFGITKT
SMLPATAGNNTMIKNDGPKASEEAEEMWASLCREAVGVLICAATITRPDI
AHAVRITTKNCEDPGVAHKRAVVKILHYILRSADLGITYGGQDCEVEMLA
YTNSDYATCKDSRRSVSGGVVLLGGGAISWHTRAKEVATAGTT*
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mRNA from alignment at H-paniculata_contig14096:130..1391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14096.2499.1 ID=mRNA_H-paniculata_contig14096.2499.1|Name=mRNA_H-paniculata_contig14096.2499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1262bp|location=Sequence derived from alignment at H-paniculata_contig14096:130..1391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGCCAGCACAAAAATGATGTTGTCGCTTGCGGCAATCCAGGACTG GAAGCTCCGGCATGTCGACTTTGAACAAGCTTATCTGCAGGCGCCCATTG ACCAGGAGAGTTTCGGCGAAATTCCCGTAAAATACCGGGAGTTCCCAGGA GCGGTGGGGTGCCTCAACAAGGCAATCTACGGATTGGTGCAAGCCGGAAG ATGCTGGAGTATGAAGGTTACCGCGGACCTCACGGCGAAAGCGTTCGAGC AATCGACCCGTGTGTGTTCCGCAAGATCGTCGACAGGGAGGTGGTCGCAG TGATCATCATATACGTGGATGACCTACTGATCAGCACCAAGGAACCCAAA ATCATGACGAGTTGCTGGCGGACCTGAGATCACAAGCTCAAAGACGTGGG AAATGTAGGGTACTATTTAGTATTCCACATCACCCGCGATAGGAAAGAGA GGAAGATCAAGATTGACCAGCACCTCTACGCGAGGTCCATGGCCGAGCGT TTCGGGATAACCAAGACCAGCATGCTCCCGGCCACGGCGGGAAACAACAC CATGATCAAAAACGACGGGCCGAAGGCCTCAGAGGAAGCCGAGGAGATGT GGGCGTCCCTATGCAGGGAGGCAGTGGGGGTGCTCATTTGTGCGGCGACA ATAACGCGACCCGACATCGCACACGCCGTACGCATTACGACAAAAAATTG TGAGGATCCCGGGGTGGCGCACAAGAGAGCTGTGGTGAAGATTCTGCACT ACATACTAAGGAGCGCGGACCTGGGAATCACCTACGGCGGACAGGACTGC GAGGTCGAAATGTTGGCTTACACTAACTCGGACTATGCAACGTGCAAAGA CAGCCGACGCTCGGTCTCCGGCGGAGTGGTACTGCTGGGGGGGGGCGCGA TCAGTTGGCACACGAGAGCTAAGGAGGTGGCAACAGCGGGGACAACATAA GCGAAGCACGTCGCGTTGGCGGAGACGGTGAACGAAGTACTGCTTTTGCG TCAAGTGCAAGCGTTCATCATGCCGACGCTGGAATACTACCCCGTAATAA TTAAGGAAGATACCCAAGGGGCCGAAAAGATGGCTCACAACAAGCACAGC AGTCGGAGGATGCGCCACATCGAGGTGAAGCACCACATTGTTCGCGATGA GGTTGAGGCTGGGAAGGTGGACATAGTCTGTATGGGGGTGGGAGAGCAGC ACGTCGATGTACTCACGAAGGCGCTGGAGAGGAGTTCTTTTGAGAAGCAT GTAAACGCGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14096:130..1391+

>mRNA_H-paniculata_contig14096.2499.1 ID=mRNA_H-paniculata_contig14096.2499.1|Name=mRNA_H-paniculata_contig14096.2499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig14096:130..1391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGAGTATGAAGGTTACCGCGGACCTCACGGCGAAAGCGTTCGAGC
AATCGACCCGTGTGTGTTCCGCAAGATCGTCGACAGGGAGGTGGTCGCAG
TGATCATCATATACGTGGATGACCTACTGATCAGCACCAAGGAACCCAAA
ATCATGACGAATGCTGGAGTATGAAGGTTACCGCGGACCTCACGGCGAAA
GCGTTCGAGCAATCGACCCGTGTGTGTTCCGCAAGATCGTCGACAGGGAG
GTGGTCGCAGTGATCATCATATACGTGGATGACCTACTGATCAGCACCAA
GGAACCCAAAATCATGACGAATCACAAGCTCAAAGACGTGGGAAATGTAG
GGTACTATTTAGTATTCCACATCACCCGCGATAGGAAAGAGAGGAAGATC
AAGATTGACCAGCACCTCTACGCGAGGTCCATGGCCGAGCGTTTCGGGAT
AACCAAGACCAGCATGCTCCCGGCCACGGCGGGAAACAACACCATGATCA
AAAACGACGGGCCGAAGGCCTCAGAGGAAGCCGAGGAGATGTGGGCGTCC
CTATGCAGGGAGGCAGTGGGGGTGCTCATTTGTGCGGCGACAATAACGCG
ACCCGACATCGCACACGCCGTACGCATTACGACAAAAAATTGTGAGGATC
CCGGGGTGGCGCACAAGAGAGCTGTGGTGAAGATTCTGCACTACATACTA
AGGAGCGCGGACCTGGGAATCACCTACGGCGGACAGGACTGCGAGGTCGA
AATGTTGGCTTACACTAACTCGGACTATGCAACGTGCAAAGACAGCCGAC
GCTCGGTCTCCGGCGGAGTGGTACTGCTGGGGGGGGGCGCGATCAGTTGG
CACACGAGAGCTAAGGAGGTGGCAACAGCGGGGACAACATAAATCACAAG
CTCAAAGACGTGGGAAATGTAGGGTACTATTTAGTATTCCACATCACCCG
CGATAGGAAAGAGAGGAAGATCAAGATTGACCAGCACCTCTACGCGAGGT
CCATGGCCGAGCGTTTCGGGATAACCAAGACCAGCATGCTCCCGGCCACG
GCGGGAAACAACACCATGATCAAAAACGACGGGCCGAAGGCCTCAGAGGA
AGCCGAGGAGATGTGGGCGTCCCTATGCAGGGAGGCAGTGGGGGTGCTCA
TTTGTGCGGCGACAATAACGCGACCCGACATCGCACACGCCGTACGCATT
ACGACAAAAAATTGTGAGGATCCCGGGGTGGCGCACAAGAGAGCTGTGGT
GAAGATTCTGCACTACATACTAAGGAGCGCGGACCTGGGAATCACCTACG
GCGGACAGGACTGCGAGGTCGAAATGTTGGCTTACACTAACTCGGACTAT
GCAACGTGCAAAGACAGCCGACGCTCGGTCTCCGGCGGAGTGGTACTGCT
GGGGGGGGGCGCGATCAGTTGGCACACGAGAGCTAAGGAGGTGGCAACAG
CGGGGACAACATAA
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