mRNA_H-paniculata_contig1409.2496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1409.2496.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE) HSP 1 Score: 592 bits (1526), Expect = 8.220e-174 Identity = 351/728 (48.21%), Postives = 450/728 (61.81%), Query Frame = 3
Query: 345 VTEYMWEWHGPQAEMARPRRPGGGADAGDDAPVDDPEDPVHSRNQRWREHGKSMAGGGGIHVXXXXXNENAAELKVMLSTFQSDHQAPCRVRVTFIVDSHSSGFYKEHTDTYMELRQLLPISELSSKGEEKQEVGQESFEEFGCSANSGVLPKCEIPFDLYVKGRSLPQGKRNSLVLFFDEILPSKIARGEAAEPEAVYILDADTGHP-DGLDDLLRMWQLLMSEGEETAAYTCPVRPVHQLESFLAASQALEYAQVWDCVGESYFAAQTAARGTSMMLKYSCLIEDGRGAMPPIGEGAQCPVLEVLSKTAASLVTLILLDVSPNDGILVLLRQRGYDVRSCAVADAVTCVPNSLLDFYAQRRRWYAASATAVLSSLTGRECYFQQRRGRGIMALYTLLFNVYLHSGVLFLPVLLTKGVS---LIYSSRNSSDSE--------------------LVLEWLVFGAIWAFLICNAIFYATTSYRHLWIWINVSSMMWMAFSALVLIGVSVFVTPWVGAVVLLAPFLLGALNVCGDTPTYWAWMALSAIPFVLVASVNSVLVLIFAVATLDSTEWGTRDVGSFDSGITKKRTTENFWKKVFYLFWGFAISIAAGAILLVSSKFTMLPIAIGIPILANVGKLLVSIIPSKLERSRQKLCLGDTMMDRPVSLGRRNMSEHVPSNGRSLQARPDRQRNTARKSSVISS------CPTENDSYVTADDGTPSPG 2438
+TE MWEW GP++E R P+ + WREHGK GGGGIH+ NE ELKVMLSTF+ D A C VR++F++D TD L++LL +++ S+ E FGC +SG L K IPFDLYVKG SLP GKRNSLV FF++ILP K++RGEA EP+AVY+LDAD+GHP +GL DL MW+LLM+E EE A TCPVRPVH + SFLAASQ+LE+A +WD VGES+F QT RG M KY CL+EDGR A PPIGEGA P+L SKTAA L LILLD SP++G+LVLLRQRG+DVRSC AD VTCVP S ++FYAQRRRWYA S AV S LTG+E YFQ R I++ Y + N++LHSG+ +PVLL KG+ L SR SD + L+W+VF +W F + N FY T S LW+WINV+S++WM L+G V+P + ++++ P +L LN T W ++ ++A+PFVL+ +VNSVLV ++A+ATLDSTEWGTRDVGSFDSG++K R +K+ LF A S A G ++++SS LPI IGIP A + KLL+ ++P+KLERSRQ LGD + RP+SL R +++E P NG + DR R I P + S+VTA+DGTPSPG
Sbjct: 1 MTETMWEWDGPESE----RLXXXXXXXXXXXXXXXRGMPLPLMSPLWREHGKGQ-GGGGIHIVVCCCNETQEELKVMLSTFRIDATASCLVRISFVLDPRGPAQASSETDKV--LKRLLRVTDESAT------------EVFGCIHHSGTLDKTLIPFDLYVKGPSLPVGKRNSLVTFFNDILPVKMSRGEAVEPDAVYLLDADSGHPVNGLQDLESMWRLLMAE-EEVACVTCPVRPVHPMGSFLAASQSLEFA-LWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAEPPIGEGAMPPLLNPFSKTAAGLPALILLDSSPSEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIEFYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANLFLHSGLALMPVLLAKGLHQLVLYDESRGESDDDWNDEWSEWQEESADDGIDQHTNLDWIVFALVWGFFLLNVGFYLTRSQDQLWMWINVTSVLWMLLCGGTLVGSGFAVSPLIPVMLVIIPPVLAGLNTARGTIATWRYLCVAAVPFVLLTTVNSVLVFLYALATLDSTEWGTRDVGSFDSGVSKPRAASMRRRKLCILFTTMATSCALGVVMMISSSLIFLPIVIGIPSAAYLLKLLLVVVPAKLERSRQTYLLGD-VGSRPLSL-RGSVAELAPINGCPPEFSTDRHSGGDRNGGGIGQKGLGPKSPAKTGSHVTAEDGTPSPG 705
BLAST of mRNA_H-paniculata_contig1409.2496.1 vs. uniprot
Match: D8LBH7_ECTSI (Chitin synthase 1, chs-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH7_ECTSI) HSP 1 Score: 436 bits (1120), Expect = 4.350e-133 Identity = 247/481 (51.35%), Postives = 305/481 (63.41%), Query Frame = 3
Query: 345 VTEYMWEWHGPQAEMARPRRPGGGADAGDDAPVDDPEDPVHSRNQRWREHGKSMAGGGGIHVXXXXXNENAAELKVMLSTFQSDHQAPCRVRVTFIVDSHSSGFYKEHTDTYMELRQLLPISELSSKGEEKQEVGQESFEEFGCSANSGVLPKCEIPFDLYVKGRSLPQGKRNSLVLFFDEILPSKIARGEAAEPEAVYILDADTGHP-DGLDDLLRMWQLLMSEGEETAAYTCPVRPVHQLESFLAASQALEYAQVWDCVGESYFAAQTAARGTSMMLKYSCLIEDGRGAMPPIGEGAQCPVLEVLSKTAASLVTLILLDVSPNDGILVLLRQRGYDVRSCAVADAVTCVPNSLLDFYAQRRRWYAASATAVLSSLTGRECYFQQRRGRGIMALYTLLFNVYLHSGVLFLPVLLTKGVS---LIYSSRNSSDSE--------------------LVLEWLVFGAIWAFLICNAIFYATTS 1715
+ E MWEW GP++E RPR +D DD P P+ + WREHGK GGGGIH+ NE ELKVMLSTF++D A C VR++F+++ + TD L++LL +++ S+ E GC +SG L K IPFDLYVKG SLP GKRNSLV FF++ILP K++RGEA EP+ VY+LDAD+GHP +GL+DL MW+LLM+E EE A TCPVRPVH +ESFLAASQ+LE+A +WD VGES+F QT RG M KY CL+EDGR A PP+GEGA P+L SKTAA L LILLD SPN+G+LVLLRQRG+DVRSC AD VTCVP S ++ YAQRRRWYA S AV S LTG+E YFQ R I++ Y + NV+LHSG+ +PVLL KG+ L SR SD E L+W+VF +W FL+ N Y T S
Sbjct: 1 MAETMWEWDGPESERLRPRARNN-SDEDDDGERGMPLPPM---SPLWREHGKGQ-GGGGIHIVVCCCNETQEELKVMLSTFRTDATASCPVRISFVLEPRGAAEASSETDEV--LKRLLRVTDESAT------------EVSGCIHHSGTLDKTLIPFDLYVKGPSLPVGKRNSLVTFFNDILPVKMSRGEAVEPDVVYLLDADSGHPVNGLEDLESMWRLLMAE-EEVACVTCPVRPVHPMESFLAASQSLEFA-LWDNVGESHFGVQTTCRGAQCMFKYRCLVEDGRLAQPPVGEGAMPPLLNSFSKTAAGLPALILLDSSPNEGLLVLLRQRGFDVRSCGTADGVTCVPCSWIELYAQRRRWYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANVFLHSGLALMPVLLAKGIHRLVLYDESRGESDDEWNNEWSAWQEESADDDIDRHTNLDWIVFALVWGFLLLNVGVYLTRS 460 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1409.2496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1409.2496.1 >prot_H-paniculata_contig1409.2496.1 ID=prot_H-paniculata_contig1409.2496.1|Name=mRNA_H-paniculata_contig1409.2496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1591bp MTIVTEYMWEWHGPQAEMARPRRPGGGADAGDDAPVDDPEDPVHSRNQRWback to top mRNA from alignment at H-paniculata_contig1409:2107..23333+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1409.2496.1 ID=mRNA_H-paniculata_contig1409.2496.1|Name=mRNA_H-paniculata_contig1409.2496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21227bp|location=Sequence derived from alignment at H-paniculata_contig1409:2107..23333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1409:2107..23333+ >mRNA_H-paniculata_contig1409.2496.1 ID=mRNA_H-paniculata_contig1409.2496.1|Name=mRNA_H-paniculata_contig1409.2496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9546bp|location=Sequence derived from alignment at H-paniculata_contig1409:2107..23333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |