mRNA_H-paniculata_contig14.2443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14.2443.1
Unique NamemRNA_H-paniculata_contig14.2443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14.2443.1 vs. uniprot
Match: A0A6H5JK21_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK21_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.250e-18
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 2 
Query:  158 MMSAQALFRGNIPGLTTFGRNEINNFHKEKALLLSAAKASGDSDKCTMIEETTPDVLNAHGLLMFLK 358
            MMSAQALF  +IPGLT+F R E+++F +EKA LLSAA+A+GD++K  M+EETTPDVLNA GLLMFL+
Sbjct:  224 MMSAQALFGKSIPGLTSFDRAEMHSFQQEKAQLLSAARANGDTEKRKMLEETTPDVLNAKGLLMFLR 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK21_9PHAE4.250e-1868.66MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14contigH-paniculata_contig14:67130..69382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue7.7e-16
Seed eggNOG ortholog2880.D8LCT4
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons2
Model size644
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14.2443.1prot_H-paniculata_contig14.2443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14 67140..69382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.20137-UTR-H-paniculata_contig14:67129..671391622929111.20137-UTR-H-paniculata_contig14:67129..67139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14 67130..67139 +
1691480735.7034545-UTR-H-paniculata_contig14:67129..671391691480735.7034545-UTR-H-paniculata_contig14:67129..67139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14 67130..67139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.2204583-CDS-H-paniculata_contig14:67139..673411622929111.2204583-CDS-H-paniculata_contig14:67139..67341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 67140..67341 +
1691480735.7179358-CDS-H-paniculata_contig14:67139..673411691480735.7179358-CDS-H-paniculata_contig14:67139..67341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 67140..67341 +
1622929111.2345662-CDS-H-paniculata_contig14:68951..693821622929111.2345662-CDS-H-paniculata_contig14:68951..69382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 68952..69382 +
1691480735.728351-CDS-H-paniculata_contig14:68951..693821691480735.728351-CDS-H-paniculata_contig14:68951..69382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 68952..69382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14.2443.1

>prot_H-paniculata_contig14.2443.1 ID=prot_H-paniculata_contig14.2443.1|Name=mRNA_H-paniculata_contig14.2443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MRGKSGEVCRGTSDASAAGLSTTKPPPGGRENNAAAAAAIAGGGGSSTAM
MSAQALFRGNIPGLTTFGRNEINNFHKEKALLLSAAKASGDSDKCTMIEE
TTPDVLNAHGLLMFLKKSSSSETDDNDDEEDEKEHDDDDGDDQTPALKTT
SELGSAASPITAVPGATAAAAAGVASDGETPGAAGGNAMHEGLRMFLKKS
LSSDDNSQSGG
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mRNA from alignment at H-paniculata_contig14:67130..69382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14.2443.1 ID=mRNA_H-paniculata_contig14.2443.1|Name=mRNA_H-paniculata_contig14.2443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2253bp|location=Sequence derived from alignment at H-paniculata_contig14:67130..69382+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGAGCAGATGAGAGGAAAGAGTGGAGAGGTTTGCCGCGGAACCTCTG
ATGCTAGTGCCGCCGGCTTGAGTACTACTAAGCCACCCCCGGGTGGACGA
GAGAACAATGCGGCGGCTGCTGCCGCCATCGCCGGAGGAGGGGGTAGTTC
CACAGCGATGATGTCGGCGCAGGCTTTGTTCCGGGGGAATATTCCTGGCC
TGACAACCTTTGGTGAGTGGGGATGATATCGGAGTCATCGGTCGTGCTGT
GTGTATGTGTGGTGGTGTTCGGTCGCGTTGTCGTGTGTTCGTCGGGTACC
ACTACTCTATCAGAAGTTATGGTGATGCATGCGCTCTTCCTCGGTTAAGT
TATTACCGCCGCTTGAAATCGAATCTAGCACTAAGTTCACCATTCACGTA
ATATGTTGTATATTGCTTTCCATTACAGAGCTAGTCTCGGGAAGAACTTC
ACCATCGAGTGCCTTTCGGTCATAAACTAGGACTAATGACCAAACCCCAA
ATATCTCCCCATGCCGGGAGTTCAAATTGATTTAGTCCAAGACTCGGCAT
GCTGGGGGGACTCATGTCGGCTCCCACCTTCCCTTGCTCCGGACGATGCT
TACAGTTGTCGCTAGTTTGCAGCTCGCTGTTGCTGTTTAGCGTACGACCG
ACATTTCACATGGCGTCTTTCGTTGTTGTTTTTTTCTTTTACACTTGACT
AAAACCAGAACATGTCCGTGGTCGATTGTTTTTCTGGTTCAAGCCGGTTG
GCGACTAGTTCTGTAGGGTTTTCATCCCTACGAATACTTGGAGCAGTCAC
GACAACACTTTGAGAGTATTTGTCCGAGTTCAGAATATGCGCGGGCACGT
AGGAAATAGTATTGACCCCCTATTCTTCCGTTTTACTACTACCAAGAGTA
GTAGTCCTAGATGGTCCGGGACACGTAAAATTAACGTTATCATGCTGAAC
CTCCTGGTAAATCCTTTTTTATTCTCGTTGTGAGTGCTTGAAGCATTAGT
ATTTATCCGGGGTGTGAAAGTTTTTGTTTTTTTTTAACCCTCGGAAGGCT
AAGCCAAAAACCTCCATCCGATGCTTCCGTACCGAAGTACGTCTACATTT
CCTTTGACAGAACAGAGTTATTTTTTTCCTCTGCGGGGTAGGCGCCACCC
CGGTTCGGCTGAACCAGGTAGGCAATGCAGGGGTTGCACCCACTAAAAGA
CCTCTGACTAGATTTCCAGTCAGTCATGCTCAGTTCACGAGCTACCTTCC
CCGTTCGGGCGTAGGTCCGTGGGTGTGAAAGGTTTTACTCTCTTGAGCCC
AAATTGCGTTCGGCTCTTTACCCTAACTTGTAGCAGTGAGCCTTTCGGCG
GCTGGTTTAAGTCGGATTTTCGCGATCGTCATGTATAGAGTCCTCGTTTC
ATTGTTGATTCTTGTGAACAGGAAAAGCTCCCTCTTTGTCGCACTGAATG
AGGACCGAGAAAAACGAAGTTTACGTTCGACGTTTCAAGCGCTCGCGCAA
TTACTGTCCGGTGCTTGAATATAATTCATTAACGTACTGTAGTGTCATTT
GTTTTTTAGCTGAGCTGAGACCGCTCAAGCGGTGACGATGCAGTGGCAGA
TGGCTACTCTGCAACAACGATCTGGACAAATGTTGGGATGATGATGATCG
TCTACCTGACCGCATCGATCAATGTATCCTCGGGTAATGGTGGTAGGAAA
AAACATCGCCGAATACACGTTCAATTGAATTGTCAATGCTTAGGTTTTCC
CCTCGTATGTGTGTATATATTGATGTAAATCGATCTTCTCTCCCCCGTCG
TCCTTCGCACAAAACAAAACAGGGCGTAACGAGATCAACAACTTTCACAA
GGAGAAGGCTCTCCTTTTGTCCGCGGCTAAGGCATCCGGAGACAGTGACA
AGTGCACCATGATCGAGGAAACCACGCCCGACGTCCTCAATGCTCACGGA
CTCCTCATGTTCCTGAAGAAGTCATCCTCCAGCGAAACTGACGACAACGA
CGATGAGGAAGACGAAAAGGAACACGACGATGATGACGGCGATGACCAGA
CTCCAGCGTTGAAGACCACGTCAGAGTTGGGATCCGCAGCTTCGCCAATA
ACTGCCGTTCCCGGAGCCACCGCAGCGGCGGCGGCGGGGGTAGCTTCTGA
TGGTGAAACGCCGGGCGCCGCCGGTGGCAATGCCATGCACGAGGGCCTGC
GAATGTTTCTCAAAAAGTCGTTGTCTTCTGATGATAACTCGCAGAGTGGT
GGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14:67130..69382+

>mRNA_H-paniculata_contig14.2443.1 ID=mRNA_H-paniculata_contig14.2443.1|Name=mRNA_H-paniculata_contig14.2443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig14:67130..69382+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGGAAAGAGTGGAGAGGTTTGCCGCGGAACCTCTGATGCTAGTGC
CGCCGGCTTGAGTACTACTAAGCCACCCCCGGGTGGACGAGAGAACAATG
CGGCGGCTGCTGCCGCCATCGCCGGAGGAGGGGGTAGTTCCACAGCGATG
ATGTCGGCGCAGGCTTTGTTCCGGGGGAATATTCCTGGCCTGACAACCTT
TGATGAGAGGAAAGAGTGGAGAGGTTTGCCGCGGAACCTCTGATGCTAGT
GCCGCCGGCTTGAGTACTACTAAGCCACCCCCGGGTGGACGAGAGAACAA
TGCGGCGGCTGCTGCCGCCATCGCCGGAGGAGGGGGTAGTTCCACAGCGA
TGATGTCGGCGCAGGCTTTGTTCCGGGGGAATATTCCTGGCCTGACAACC
TTTGGGCGTAACGAGATCAACAACTTTCACAAGGAGAAGGCTCTCCTTTT
GTCCGCGGCTAAGGCATCCGGAGACAGTGACAAGTGCACCATGATCGAGG
AAACCACGCCCGACGTCCTCAATGCTCACGGACTCCTCATGTTCCTGAAG
AAGTCATCCTCCAGCGAAACTGACGACAACGACGATGAGGAAGACGAAAA
GGAACACGACGATGATGACGGCGATGACCAGACTCCAGCGTTGAAGACCA
CGTCAGAGTTGGGATCCGCAGCTTCGCCAATAACTGCCGTTCCCGGAGCC
ACCGCAGCGGCGGCGGCGGGGGTAGCTTCTGATGGTGAAACGCCGGGCGC
CGCCGGTGGCAATGCCATGCACGAGGGCCTGCGAATGTTTCTCAAAAAGT
CGTTGTCTTCTGATGATAACTCGCAGAGTGGTGGAGGCGTAACGAGATCA
ACAACTTTCACAAGGAGAAGGCTCTCCTTTTGTCCGCGGCTAAGGCATCC
GGAGACAGTGACAAGTGCACCATGATCGAGGAAACCACGCCCGACGTCCT
CAATGCTCACGGACTCCTCATGTTCCTGAAGAAGTCATCCTCCAGCGAAA
CTGACGACAACGACGATGAGGAAGACGAAAAGGAACACGACGATGATGAC
GGCGATGACCAGACTCCAGCGTTGAAGACCACGTCAGAGTTGGGATCCGC
AGCTTCGCCAATAACTGCCGTTCCCGGAGCCACCGCAGCGGCGGCGGCGG
GGGTAGCTTCTGATGGTGAAACGCCGGGCGCCGCCGGTGGCAATGCCATG
CACGAGGGCCTGCGAATGTTTCTCAAAAAGTCGTTGTCTTCTGATGATAA
CTCGCAGAGTGGTGGA
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