mRNA_H-paniculata_contig1391.2396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1391.2396.1
Unique NamemRNA_H-paniculata_contig1391.2396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1391.2396.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.360e-17
Identity = 55/144 (38.19%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:   70 KEEHICRTCARAAAGSNGGDGPPWTVS---TLVGGRVNRKRVLRFLEREATEGWPIGVFDFNMCVE--KPAVGADLK-------------------------RRPCSREGCDRESRFDSRFCCDACGVLDAESLLADAVVYSLE 411
            +EE +CR CAR   G+  G  P  T+    +LV  R  R ++L FLER+   G P GVFD  + +     A G +LK                         R PC+   C RESR DS+FCCDACGVL AE+ LA A+ + +E
Sbjct:  559 REETLCRACARITIGAPQGKDPTATLQKQLSLV--REKRTKMLEFLERDVETGTPCGVFDLPLNIRDVNTAGGVELKDGNAKGPAAGGNSNGGNGGVDMRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVE 700
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BLAST of mRNA_H-paniculata_contig1391.2396.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.510e-16
Identity = 54/144 (37.50%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:   70 KEEHICRTCARAAAGSNGGDGPPWTVS---TLVGGRVNRKRVLRFLEREATEGWPIGVFDFNMCVEKPAV-------------------------GADLK--RRPCSREGCDRESRFDSRFCCDACGVLDAESLLADAVVYSLE 411
            +EE +CRTCAR A G+  G  P  T+    +LV  R  R ++L FLE +   G P GVFD  + +   +                          G D +  R PC+   C RESR DS+FCCDACGVL AE+ LA A+ + +E
Sbjct:  582 REETLCRTCARIAIGAPQGKDPTATLQKQLSLV--REKRTKMLEFLEEDVETGAPCGVFDLPLNIRDVSTAGGVGPKDGNANGPDAGGNSNGGNGGVDKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVE 723
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1391.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L313_9PHAE4.360e-1738.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA3_ECTSI1.510e-1637.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1391contigH-paniculata_contig1391:16618..17648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size415
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.108895-CDS-H-paniculata_contig1391:16617..168631622929105.108895-CDS-H-paniculata_contig1391:16617..16863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1391 16618..16863 +
1691480733.3575037-CDS-H-paniculata_contig1391:16617..168631691480733.3575037-CDS-H-paniculata_contig1391:16617..16863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1391 16618..16863 +
1622929105.1219766-CDS-H-paniculata_contig1391:17479..176471622929105.1219766-CDS-H-paniculata_contig1391:17479..17647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1391 17480..17647 +
1691480733.3659074-CDS-H-paniculata_contig1391:17479..176471691480733.3659074-CDS-H-paniculata_contig1391:17479..17647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1391 17480..17647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1391.2396.1prot_H-paniculata_contig1391.2396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1391 16618..17647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1391.2396.1

>prot_H-paniculata_contig1391.2396.1 ID=prot_H-paniculata_contig1391.2396.1|Name=mRNA_H-paniculata_contig1391.2396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
AVGAAAAAATTAATAISPAVPVVKEEHICRTCARAAAGSNGGDGPPWTVS
TLVGGRVNRKRVLRFLEREATEGWPIGVFDFNMCVEKPAVGADLKRRPCS
REGCDRESRFDSRFCCDACGVLDAESLLADAVVYSLEG
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mRNA from alignment at H-paniculata_contig1391:16618..17648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1391.2396.1 ID=mRNA_H-paniculata_contig1391.2396.1|Name=mRNA_H-paniculata_contig1391.2396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1031bp|location=Sequence derived from alignment at H-paniculata_contig1391:16618..17648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGGGGCGGCGGCGGCGGCGGCAACGACTGCGGCGACAGCAATAAG
CCCAGCTGTCCCCGTGGTGAAGGAGGAACATATCTGTAGGACGTGTGCGC
GCGCGGCCGCCGGATCTAACGGGGGTGATGGGCCGCCCTGGACGGTGTCG
ACGTTGGTGGGCGGGCGCGTAAACCGAAAGCGGGTGCTAAGGTTCTTGGA
GAGGGAAGCGACTGAGGGCTGGCCTATTGGCGTGTTCGACTTCAATGTGA
GTTTGTTTCTTTTTCTTTTATTCTCTTTTTTGTTCCCCTTTGTTTTCAGT
TTCTGATATTTAATACTTTATCCGTGTTGTGCTGCGTATTTGTGTATCGC
GTATGTTGGGGTAACGTTTTGTTTCATGTTTTTTGTTTTTATGTTTTTTT
TTATGTGGTTGTGTTTCGTGTTTTGGATGCTAGGTTTGTAATTATGTAAT
TGGTTGTGCGCTTGTATTCATGTCTTGTCTGTATGGCAGTGCAGGTAAAG
CATATTTTCCATTCAAGATAGCTATTTTGGTTGTTCATATGTACCAGGTA
AGAGTTTTGATGGAAGGTAGGGTACCAAAAGGCGACAACTAGCTACCGTC
GCAACAACAGTTGTTTTTAGAATCACATGCCTCTTTCTCACGCCCCCGCT
CAGATCCGGGGGGCAAGGGATAAATCTACCTTTAGTCGCCTGCTTTGTCT
ATTATGTCCTTGCTATCCCATCCCCATGTTGCGATGTCCTGAAGGCGAAG
TTTGTACTTTGTATATATATATATATAATGTAGTATATTCCAACGTTGTT
ATTCTCTCTTGTCCTTTCTTTTTTTCCTCTTTCGCTCTCTCTCGCTCTCT
CTGTCAAACAAGATGTGCGTTGAAAAGCCGGCAGTGGGTGCAGACTTGAA
ACGGCGGCCTTGTAGCAGGGAAGGCTGTGATCGAGAAAGCCGGTTCGACT
CCCGCTTCTGCTGCGATGCATGTGGCGTGCTAGACGCGGAGAGTCTGCTG
GCCGATGCCGTAGTGTATTCGTTGGAAGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1391:16618..17648+

>mRNA_H-paniculata_contig1391.2396.1 ID=mRNA_H-paniculata_contig1391.2396.1|Name=mRNA_H-paniculata_contig1391.2396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig1391:16618..17648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGGGGCGGCGGCGGCGGCGGCAACGACTGCGGCGACAGCAATAAG
CCCAGCTGTCCCCGTGGTGAAGGAGGAACATATCTGTAGGACGTGTGCGC
GCGCGGCCGCCGGATCTAACGGGGGTGATGGGCCGCCCTGGACGGTGTCG
ACGTTGGTGGGCGGGCGCGTAAACCGAAAGCGGGTGCTAAGGTTCTTGGA
GAGGGAAGCGACTGAGGGCTGGCCTATTGGCGTGTTCGACTTCAATGCGG
TGGGGGCGGCGGCGGCGGCGGCAACGACTGCGGCGACAGCAATAAGCCCA
GCTGTCCCCGTGGTGAAGGAGGAACATATCTGTAGGACGTGTGCGCGCGC
GGCCGCCGGATCTAACGGGGGTGATGGGCCGCCCTGGACGGTGTCGACGT
TGGTGGGCGGGCGCGTAAACCGAAAGCGGGTGCTAAGGTTCTTGGAGAGG
GAAGCGACTGAGGGCTGGCCTATTGGCGTGTTCGACTTCAATATGTGCGT
TGAAAAGCCGGCAGTGGGTGCAGACTTGAAACGGCGGCCTTGTAGCAGGG
AAGGCTGTGATCGAGAAAGCCGGTTCGACTCCCGCTTCTGCTGCGATGCA
TGTGGCGTGCTAGACGCGGAGAGTCTGCTGGCCGATGCCGTAGTGTATTC
GTTGGAAGGGATGTGCGTTGAAAAGCCGGCAGTGGGTGCAGACTTGAAAC
GGCGGCCTTGTAGCAGGGAAGGCTGTGATCGAGAAAGCCGGTTCGACTCC
CGCTTCTGCTGCGATGCATGTGGCGTGCTAGACGCGGAGAGTCTGCTGGC
CGATGCCGTAGTGTATTCGTTGGAAGGG
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