mRNA_H-paniculata_contig1389.2381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1389.2381.1
Unique NamemRNA_H-paniculata_contig1389.2381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.750e-25
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKPPPK 216
            MVF AIK LKERNGSS+ AIKK I  TYP  A  F PHQ+R+ALKKG ETGKFIKVKSSYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYP--ALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.460e-24
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKP 207
            MVF AIK LKER GSSLPA+KK I+ TYP +   F PHQ+R+ALKKGTE+GKFIKVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.630e-24
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKP 207
            MVF AIK LKER GSSLPA+KK I+ TYP +   F PHQ+R+ALKKGTE+GKFIKVKSSYKLS EAKKP
Sbjct:   12 MVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.800e-24
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKPPPK 216
            MVF AIK LKERNGSS+ AIKK I  TYP +   F PHQ+R+ALKKG E+GKFIK+K+SYKLSAEAKKP PK
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-23
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKPPPK 216
            MVF AIK LKERNGSS+ AIKK I  TYP +   F PHQ+R+ALKKG E+GKF+K+K+SYKLSAEAKKP PK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.140e-21
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKPPP 213
            MVF AIK LKERNGSS+ AIKK I  TYP +   F PHQ+R ALKKG E+GKFIK+K+SYKLS EAKKP P
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.550e-21
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   13 AIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKPP 210
            AI  LKERNGSS+PAIKK+I  TYP +   F PHQLR ALKKGTETG FIKVK+SYK+S EAKKPP
Sbjct:   11 AILALKERNGSSVPAIKKHIQATYPTL--NFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKPP 74
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BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: A0A7S2Y1F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.360e-18
Identity = 50/76 (65.79%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKPPPKKVVK 228
            M   AI  LK+R GSSLPAIK YI   YP V  KF PH LRAALKK  E GK IKVK+SYKLSA+ KKP  KKV K
Sbjct:    7 MAKAAILALKDRTGSSLPAIKAYITANYPSV--KFLPHALRAALKKAVEAGKLIKVKASYKLSADEKKP--KKVAK 78
[Close]
BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.400e-16
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLS 189
            MVF AIK LKERNGSS+ A+KK I  TYP  A  F PHQ+R+ALKKG ETGKFIKV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYP--ALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
[Close]
BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.320e-15
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTETGKFIKVKSSYKLSAEAKKP 207
            M  +A+K LKERNGSSL AIKK+I  +YP +   F  H +R+ALKKG E+GKFIKVK+SYKLSA  ++P
Sbjct:    7 MTIEAVKALKERNGSSLFAIKKHITASYPSLT--FTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEP 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1389.2381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ75_ECTSI1.750e-2577.78H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE1.460e-2475.36H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI3.630e-2475.36H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ80_ECTSI5.800e-2472.22Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE1.300e-2370.83H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE3.140e-2170.42H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI3.550e-2174.24H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y1F8_9STRA3.360e-1865.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5K9S6_9PHAE1.400e-1665.08H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI3.320e-1560.87H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1389contigH-paniculata_contig1389:7969..9650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size474
Cds size474
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.2905557-CDS-H-paniculata_contig1389:7968..82771622929103.2905557-CDS-H-paniculata_contig1389:7968..8277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1389 7969..8277 -
1691480732.6293304-CDS-H-paniculata_contig1389:7968..82771691480732.6293304-CDS-H-paniculata_contig1389:7968..8277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1389 7969..8277 -
1622929103.3016837-CDS-H-paniculata_contig1389:9485..96501622929103.3016837-CDS-H-paniculata_contig1389:9485..9650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1389 9486..9650 -
1691480732.640769-CDS-H-paniculata_contig1389:9485..96501691480732.640769-CDS-H-paniculata_contig1389:9485..9650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1389 9486..9650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1389.2381.1prot_H-paniculata_contig1389.2381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1389 7969..9650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1389.2381.1

>prot_H-paniculata_contig1389.2381.1 ID=prot_H-paniculata_contig1389.2381.1|Name=mRNA_H-paniculata_contig1389.2381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MVFQAIKELKERNGSSLPAIKKYIVTTYPEVATKFAPHQLRAALKKGTET
GKFIKVKSSYKLSAEAKKPPPKKVVKKVVKKPAPKKVVKKTPKKVMKTPK
KKAVKKKVVKKVVKKTATKKAAVSTPKKKVVKKPAAKKATLKKPAPKKVA
KKPAAPK*
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mRNA from alignment at H-paniculata_contig1389:7969..9650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1389.2381.1 ID=mRNA_H-paniculata_contig1389.2381.1|Name=mRNA_H-paniculata_contig1389.2381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1682bp|location=Sequence derived from alignment at H-paniculata_contig1389:7969..9650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTTCCAGGCAATCAAGGAGCTCAAGGAGCGTAACGGCTCCAGCCT
CCCAGCCATCAAGAAGTACATCGTTACGACCTACCCCGAGGTAGCTACCA
AGTTCGCCCCACACCAGCTCCGCGCCGCTCTCAAGAAGGGCACTGAGACC
GGGAAATTCATCAAGGTAGGGTTCTTAATTGGATGACGAGGTGTTGTATG
ATTGTCTTGGAAGCAATTTGTGCGTTTCGGGCATGCGCTCATTCAAGTTT
ATTCGTCTCTGCCGAGTGCCAAGTGTTGAACATTCTTTCCTGGGGGCGGA
GGGCCCGGTAATTTGTATTCTTGGCGCGATGCCAAGGCCCTACCAACAGA
ACGCATCGAATCAGGACAACCCCCTCCAGATATGTCGAGTTTTGTCAAAT
TTAATTATATTTTCTTCATCAATTTTACTATTTCAATAACAGGAAGGCTC
AGCTTTCGCGTGCAGTTCTAACCTGGGGTGTTATTGTGTCGTGCAATTGT
ACAGGCACTTTGAAATGTCGATTCAGTCATAATCCAAGTTTACCTTCTGT
CAAGCCTTGATCATTTTGAACTCACAATTTTCCTTATGCTTTTGGAGGGG
ATGTATGCGTTGTACCCAACAGTACACACATCAAGTGTGCAGTCAGATGT
TCACTTCAGCGGCGTTTTAAGAAGTTTCATATCATATGTTTTGAGGGAAA
CCACACCCCGTGACTCCCGCAGGAAGAAAGACACCGAGCATATCGACAGA
TAGTACTACCCGCCGAACAAAGATAGCTGCAGCTGGATTGTCGAGTGGCA
ATTGTGATTGATCACCAGACGATGACTTGGCCGTGTTCGCGCTTGAGAAA
AATACGGTCATCCTTCCTATGGACAGTACTCCTCGAATGGTGGTATATGA
GCAATAGCTCCACAACCAGAACTGTGACTCTATTGCCCACTTACCGCACT
CATCACTGAGTTGTAGAGGGACGCGATTGATCAGCATGTACTGCCGTGGC
TAACCCAGACCTGGGACCAGATGTGCTCACAAATCGACGAATGTAGACTA
CCTGTATTGTAATAACCTCAACAGTATACTCTGGCGATAATTCGCATGCC
AGTATCCCTGTACTGGATTGGACACGTGGCATGCATTACCAAGGCATGGC
GGATCGTCGGAGATGTGCAGTAATGCGCATGAAGATTTCTTATCGCCGCC
TCCACTACTGGTTCCGTGGTGACTTGCAGCGAACTCGCGTTTCGAGTTCA
GGGATTCAACCCATGTCGAAGGCTGTGTGGCAGAGCTCAAAATGCCTTTT
TTCTTGAAGATCCTGCCTGGATTTGGGTCCGTTTGATTTAGCACTTACAT
TTGTCGCACCTCAAACCTGTCAGGTGAAGAGCTCGTACAAGCTTTCCGCC
GAGGCGAAGAAGCCTCCGCCCAAGAAGGTAGTGAAGAAGGTGGTGAAGAA
GCCCGCCCCCAAGAAGGTGGTGAAGAAGACCCCTAAGAAGGTGATGAAGA
CCCCTAAGAAGAAGGCGGTGAAGAAGAAAGTTGTCAAAAAGGTAGTCAAG
AAGACCGCCACCAAAAAGGCGGCCGTAAGCACTCCCAAGAAGAAGGTGGT
CAAGAAGCCTGCCGCAAAAAAGGCTACCCTCAAGAAGCCTGCCCCTAAGA
AGGTTGCCAAGAAGCCTGCGGCCCCCAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1389:7969..9650-

>mRNA_H-paniculata_contig1389.2381.1 ID=mRNA_H-paniculata_contig1389.2381.1|Name=mRNA_H-paniculata_contig1389.2381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig1389:7969..9650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTTCCAGGCAATCAAGGAGCTCAAGGAGCGTAACGGCTCCAGCCT
CCCAGCCATCAAGAAGTACATCGTTACGACCTACCCCGAGGTAGCTACCA
AGTTCGCCCCACACCAGCTCCGCGCCGCTCTCAAGAAGGGCACTGAGACC
GGGAAATTCATCAAGATGGTCTTCCAGGCAATCAAGGAGCTCAAGGAGCG
TAACGGCTCCAGCCTCCCAGCCATCAAGAAGTACATCGTTACGACCTACC
CCGAGGTAGCTACCAAGTTCGCCCCACACCAGCTCCGCGCCGCTCTCAAG
AAGGGCACTGAGACCGGGAAATTCATCAAGGTGAAGAGCTCGTACAAGCT
TTCCGCCGAGGCGAAGAAGCCTCCGCCCAAGAAGGTAGTGAAGAAGGTGG
TGAAGAAGCCCGCCCCCAAGAAGGTGGTGAAGAAGACCCCTAAGAAGGTG
ATGAAGACCCCTAAGAAGAAGGCGGTGAAGAAGAAAGTTGTCAAAAAGGT
AGTCAAGAAGACCGCCACCAAAAAGGCGGCCGTAAGCACTCCCAAGAAGA
AGGTGGTCAAGAAGCCTGCCGCAAAAAAGGCTACCCTCAAGAAGCCTGCC
CCTAAGAAGGTTGCCAAGAAGCCTGCGGCCCCCAAGTAAGTGAAGAGCTC
GTACAAGCTTTCCGCCGAGGCGAAGAAGCCTCCGCCCAAGAAGGTAGTGA
AGAAGGTGGTGAAGAAGCCCGCCCCCAAGAAGGTGGTGAAGAAGACCCCT
AAGAAGGTGATGAAGACCCCTAAGAAGAAGGCGGTGAAGAAGAAAGTTGT
CAAAAAGGTAGTCAAGAAGACCGCCACCAAAAAGGCGGCCGTAAGCACTC
CCAAGAAGAAGGTGGTCAAGAAGCCTGCCGCAAAAAAGGCTACCCTCAAG
AAGCCTGCCCCTAAGAAGGTTGCCAAGAAGCCTGCGGCCCCCAAGTAA
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