mRNA_H-paniculata_contig13200.2009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13200.2009.1
Unique NamemRNA_H-paniculata_contig13200.2009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13200.2009.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.870e-12
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:  796 ARSLRPNSAALSAIIRGDRRANMRMDRAQFDGAQTRLRNLAPEGNEVKDKF 948
            AR+ RPNSAAL  I+R DRR N+RMDR QFDGAQTRLR LAPEGN+V D F
Sbjct:  289 ARAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNF 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13200.2009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE3.870e-1274.51C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13200contigH-paniculata_contig13200:939..1985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size948
Cds size948
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929045.5539842-CDS-H-paniculata_contig13200:938..13511622929045.5539842-CDS-H-paniculata_contig13200:938..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13200 939..1351 -
1691480710.8645105-CDS-H-paniculata_contig13200:938..13511691480710.8645105-CDS-H-paniculata_contig13200:938..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13200 939..1351 -
1622929045.5737793-CDS-H-paniculata_contig13200:1450..19851622929045.5737793-CDS-H-paniculata_contig13200:1450..1985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13200 1451..1985 -
1691480710.874499-CDS-H-paniculata_contig13200:1450..19851691480710.874499-CDS-H-paniculata_contig13200:1450..1985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13200 1451..1985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13200.2009.1prot_H-paniculata_contig13200.2009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13200 939..1985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13200.2009.1

>prot_H-paniculata_contig13200.2009.1 ID=prot_H-paniculata_contig13200.2009.1|Name=mRNA_H-paniculata_contig13200.2009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MKKQYRRRQDSSSGEESQEEGEVGQAPPPSKLARDSDGASRPASGPLDED
RDKRRERARDDEQRRRGSGDERGSRSSRRHDDNKGSGAGRDRSTRDVDGR
WASMPDYGRDRDHSRDRDMDRDRDRERDRHRDREKDRSGRDSKRSAGGTY
SSLADRRDIDPRRQQQQYHEAPGRDRDGESYRGRSGDRPREAPREDPAPR
ESSGNSGSKQSRGIFSYIAGSKDGGGGGGGGGGGGGGGVGGSTPTQPAGN
AENATDSTTPRDSEEARSLRPNSAALSAIIRGDRRANMRMDRAQFDGAQT
RLRNLAPEGNEVKDKF
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mRNA from alignment at H-paniculata_contig13200:939..1985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13200.2009.1 ID=mRNA_H-paniculata_contig13200.2009.1|Name=mRNA_H-paniculata_contig13200.2009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1047bp|location=Sequence derived from alignment at H-paniculata_contig13200:939..1985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGCAGTATCGTCGCCGCCAGGACTCGTCCTCTGGCGAGGAAAG
CCAGGAGGAGGGCGAGGTGGGTCAGGCGCCACCGCCTAGCAAACTAGCGC
GAGACAGCGACGGCGCAAGCAGACCAGCTAGCGGTCCGCTGGACGAGGAC
AGAGATAAGCGGAGAGAGAGAGCGCGCGACGATGAACAGCGGCGACGTGG
TAGCGGAGATGAGAGAGGATCAAGGAGTAGCAGGAGACACGACGATAACA
AAGGTAGTGGTGCAGGACGAGACAGGAGCACCCGAGACGTAGATGGCAGA
TGGGCCAGCATGCCAGATTACGGAAGGGATAGGGATCACAGCAGAGATAG
GGATATGGATAGGGACCGAGATAGGGAACGGGATAGACATCGGGACAGAG
AAAAGGATAGAAGCGGCAGGGATAGCAAGCGCTCCGCAGGGGGCACATAC
TCATCGCTGGCAGATCGAAGAGACATCGATCCTCGGAGGCAGCAACAGCA
GTACCACGAAGCACCAGGGAGAGACAGGGACGGTGGTGGCATCAGCAGTA
GCAGGGGGACCGGCCGACGCGGTGACCGCAATCGCGATGTCGACTACACC
AACGCCCCTGTCAGCAGCGGTCGCGCAAACAGAGAGTCCTACCGCGGACG
GTCGGGGGATCGCCCTCGCGAGGCCCCGCGCGAAGATCCGGCGCCACGTG
AGAGCTCAGGTAACTCAGGTTCGAAACAGAGCAGGGGGATTTTCTCGTAC
ATTGCAGGCAGCAAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGG
CGGCGGAGGTGGCGTCGGCGGATCTACTCCCACGCAGCCAGCGGGCAATG
CAGAAAATGCAACCGATAGTACAACCCCACGAGACTCTGAAGAGGCGAGA
TCTTTGCGGCCGAATAGTGCCGCGCTTTCGGCTATCATTCGCGGCGACCG
GCGGGCCAATATGAGAATGGATCGGGCGCAATTTGACGGCGCGCAGACGC
GACTTCGCAACCTTGCCCCTGAGGGCAACGAGGTCAAGGACAAATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13200:939..1985-

>mRNA_H-paniculata_contig13200.2009.1 ID=mRNA_H-paniculata_contig13200.2009.1|Name=mRNA_H-paniculata_contig13200.2009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig13200:939..1985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGCAGTATCGTCGCCGCCAGGACTCGTCCTCTGGCGAGGAAAG
CCAGGAGGAGGGCGAGGTGGGTCAGGCGCCACCGCCTAGCAAACTAGCGC
GAGACAGCGACGGCGCAAGCAGACCAGCTAGCGGTCCGCTGGACGAGGAC
AGAGATAAGCGGAGAGAGAGAGCGCGCGACGATGAACAGCGGCGACGTGG
TAGCGGAGATGAGAGAGGATCAAGGAGTAGCAGGAGACACGACGATAACA
AAGGTAGTGGTGCAGGACGAGACAGGAGCACCCGAGACGTAGATGGCAGA
TGGGCCAGCATGCCAGATTACGGAAGGGATAGGGATCACAGCAGAGATAG
GGATATGGATAGGGACCGAGATAGGGAACGGGATAGACATCGGGACAGAG
AAAAGGATAGAAGCGGCAGGGATAGCAAGCGCTCCGCAGGGGGCACATAC
TCATCGCTGGCAGATCGAAGAGACATCGATCCTCGGAGGCAGCAACAGCA
GTACCACGAAGCACCAGGGAGAGACAGGGACGGTGATGAAGAAGCAGTAT
CGTCGCCGCCAGGACTCGTCCTCTGGCGAGGAAAGCCAGGAGGAGGGCGA
GGTGGGTCAGGCGCCACCGCCTAGCAAACTAGCGCGAGACAGCGACGGCG
CAAGCAGACCAGCTAGCGGTCCGCTGGACGAGGACAGAGATAAGCGGAGA
GAGAGAGCGCGCGACGATGAACAGCGGCGACGTGGTAGCGGAGATGAGAG
AGGATCAAGGAGTAGCAGGAGACACGACGATAACAAAGGTAGTGGTGCAG
GACGAGACAGGAGCACCCGAGACGTAGATGGCAGATGGGCCAGCATGCCA
GATTACGGAAGGGATAGGGATCACAGCAGAGATAGGGATATGGATAGGGA
CCGAGATAGGGAACGGGATAGACATCGGGACAGAGAAAAGGATAGAAGCG
GCAGGGATAGCAAGCGCTCCGCAGGGGGCACATACTCATCGCTGGCAGAT
CGAAGAGACATCGATCCTCGGAGGCAGCAACAGCAGTACCACGAAGCACC
AGGGAGAGACAGGGACGGTGAGTCCTACCGCGGACGGTCGGGGGATCGCC
CTCGCGAGGCCCCGCGCGAAGATCCGGCGCCACGTGAGAGCTCAGGTAAC
TCAGGTTCGAAACAGAGCAGGGGGATTTTCTCGTACATTGCAGGCAGCAA
AGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGAGGTGGCG
TCGGCGGATCTACTCCCACGCAGCCAGCGGGCAATGCAGAAAATGCAACC
GATAGTACAACCCCACGAGACTCTGAAGAGGCGAGATCTTTGCGGCCGAA
TAGTGCCGCGCTTTCGGCTATCATTCGCGGCGACCGGCGGGCCAATATGA
GAATGGATCGGGCGCAATTTGACGGCGCGCAGACGCGACTTCGCAACCTT
GCCCCTGAGGGCAACGAGGTCAAGGACAAATTCAGTCCTACCGCGGACGG
TCGGGGGATCGCCCTCGCGAGGCCCCGCGCGAAGATCCGGCGCCACGTGA
GAGCTCAGGTAACTCAGGTTCGAAACAGAGCAGGGGGATTTTCTCGTACA
TTGCAGGCAGCAAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGC
GGCGGAGGTGGCGTCGGCGGATCTACTCCCACGCAGCCAGCGGGCAATGC
AGAAAATGCAACCGATAGTACAACCCCACGAGACTCTGAAGAGGCGAGAT
CTTTGCGGCCGAATAGTGCCGCGCTTTCGGCTATCATTCGCGGCGACCGG
CGGGCCAATATGAGAATGGATCGGGCGCAATTTGACGGCGCGCAGACGCG
ACTTCGCAACCTTGCCCCTGAGGGCAACGAGGTCAAGGACAAATTC
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