mRNA_H-paniculata_contig12826.1776.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12826.1776.1
Unique NamemRNA_H-paniculata_contig12826.1776.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.960e-66
Identity = 120/265 (45.28%), Postives = 168/265 (63.40%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDL-GLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
            P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A   P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+  L    +T EN++ I  LV EL  + + +N  K+ AL    H  TP ER +  L   G+ +AE G   VVG P GTDA+
Sbjct:   55 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 316          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 5.680e-66
Identity = 119/267 (44.57%), Postives = 168/267 (62.92%), Query Frame = 1
Query:    1 MEKPDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
            ++ P AFPPE W L  QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + +   P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+ L   ++T EN++    LV EL  + + +N  K+ AL    H  TPTER    L   G+ +AE G   VVG P GTDA+
Sbjct:  420 IKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERR--PLGDAGLPIAEEG-ITVVGVPIGTDAY 683          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 9.970e-66
Identity = 115/264 (43.56%), Postives = 164/264 (62.12%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
            P+  PPE W L+ QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  +AFN+ KR  I+ + A   P +  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K +   + LGV L AY+DD+ L    +T EN++ I  LV EL  + + +N  K+ AL    H  TP ER +  L   G+ +AE G   VVG P GTDA+
Sbjct:   48 PNTVPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 308          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.500e-65
Identity = 120/264 (45.45%), Postives = 168/264 (63.64%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
            P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A   P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+ L    +T EN++ I  LV EL  + + +N  K+ AL    H  TP ER +  L   G+ +AE G   VVG P GTDA+
Sbjct:  424 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 684          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.440e-64
Identity = 118/264 (44.70%), Postives = 166/264 (62.88%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
            P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A   P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+ L    +T EN++ I  LV EL  + + +N  K+ AL        P ER +  L   G+ +AE G   VVG P GTDA+
Sbjct:  445 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 705          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 4.930e-61
Identity = 101/230 (43.91%), Postives = 145/230 (63.04%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNHTPT 699
            P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  N  N+ KR AI+ + A   P L   +A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+ L    +T E+++ I  LV EL  + + +N  K+ AL    H  T
Sbjct:  101 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVT 329          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.400e-59
Identity = 92/198 (46.46%), Postives = 133/198 (67.17%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLR 603
            P+AFPPE W L+ +S+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A   P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+ L    +T EN++
Sbjct:   56 PNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQ 253          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 8.710e-49
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 1
Query:  103 TMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
            T RR +AA  VR++KPKLEE+     Q+G AV GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A   P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K + + + LGV L AY+DD+ L    +T EN++ I  +V EL  + + +N  K+ AL    H  TP ER +  L   G+ +AE G   VVG P GTDA+
Sbjct:    2 TWRRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 231          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.400e-48
Identity = 92/210 (43.81%), Postives = 132/210 (62.86%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCK--------------CQEQLEALGV--GLLAYLDDLGLAMGELTE 591
            P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A + P L  ++A+CY E     I+ MD+GERR +  ++G+ QGDG+GP LFC  + P + K               +E +  +GV  G  AY++D+  AM  +TE
Sbjct:  374 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKRLLGDAGLPIAEEGITIVGVPIGTDAYVEDI--AMKVITE 581          
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.380e-46
Identity = 81/175 (46.29%), Postives = 116/175 (66.29%), Query Frame = 1
Query:   10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALG 534
            P+AFPPE W L+  S+L ALGEKCR +C+G T RR +AA  VR++KPKLEE+     Q+GVAV+GG E +++ A+   Q GHW++  D  NAFN+ KR AI+ + A   P L  ++A+CY E     I+ MD+GE R +  ++G+ QGDG+GP LFC  + P + K + + + LG
Sbjct:  431 PNAFPPEFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL14_9PHAE1.960e-6645.28Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE5.680e-6644.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE9.970e-6643.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.500e-6545.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE1.440e-6444.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KT19_9PHAE4.930e-6143.91Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L4Y4_9PHAE1.400e-5946.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE8.710e-4942.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAK8_9PHAE5.400e-4843.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA96_9PHAE1.380e-4646.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12826contigH-paniculata_contig12826:4993..5787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score82.8
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog400682.PAC_15725343
Hectar predicted targeting categoryother localisation
EggNOG OGs2D43P@1,2STRT@2759,3AAAX@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size795
Cds size795
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.0080192-CDS-H-paniculata_contig12826:4992..57871622929003.0080192-CDS-H-paniculata_contig12826:4992..5787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12826 4993..5787 +
1691480697.7687562-CDS-H-paniculata_contig12826:4992..57871691480697.7687562-CDS-H-paniculata_contig12826:4992..5787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12826 4993..5787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12826.1776.1prot_H-paniculata_contig12826.1776.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12826 4993..5787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12826.1776.1

>prot_H-paniculata_contig12826.1776.1 ID=prot_H-paniculata_contig12826.1776.1|Name=mRNA_H-paniculata_contig12826.1776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MEKPDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKP
KLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVK
RAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQ
GDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENL
RAIHFLVQELARIEVQINNAKTKALSSMNHTPTEREIATLTAMGISVAEG
GGAVVVGTPFGTDAF
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mRNA from alignment at H-paniculata_contig12826:4993..5787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12826.1776.1 ID=mRNA_H-paniculata_contig12826.1776.1|Name=mRNA_H-paniculata_contig12826.1776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig12826:4993..5787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAACCCGATGCGTTCCCGCCGGAGATCTGGGAGTTGTTCCTCCA AAGTAACCTCACGGCGCTTGGGGAGAAGTGTCGCTCGATCTGCCTAGGAT CTACGATGCGGCGTACTTTGGCCGCTGTGGTGGTCAGGCAATACAAGCCG AAGCTGGAGGAGGTTAACCTGTCGGAGCGGCAATATGGGGTAGCGGTCTC GGGCGGCGCGGAGCTCATGAGCCTTCGAGCGAAAGCACACCAACAAGTGG GGCATTGGCTTATCTCCGTCGACTATATCAATGCATTCAACTCGGTCAAG CGGGCAGCGATCTTGGAAGAAGTGGCAATCCACACCCCAGGACTGACACC GTTCGTAGCCAAATGCTATGGGGAAAAGCTGGTAGATATCATTTTCCAGA TGGACACCGGTGAACGCAGGATAATGTCTTCGGAAACAGGAATCCACCAG GGCGACGGACTGGGACCCGCCCTCTTCTGCATGCCCATCAGACCGTTCTT GTGCAAGTGCCAAGAACAACTCGAGGCTCTGGGGGTAGGACTATTGGCCT ACCTGGACGATCTGGGGCTTGCAATGGGGGAGCTGACGGAAGAAAACTTA CGGGCGATCCATTTCCTCGTGCAAGAGCTAGCACGCATAGAAGTGCAGAT CAACAACGCCAAGACGAAGGCGTTGTCCTCAATGAACCACACCCCCACCG AAAGGGAGATCGCTACGCTGACGGCGATGGGTATCAGCGTCGCAGAGGGA GGGGGGGCTGTGGTGGTGGGTACACCGTTTGGGACCGACGCATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig12826:4993..5787+

>mRNA_H-paniculata_contig12826.1776.1 ID=mRNA_H-paniculata_contig12826.1776.1|Name=mRNA_H-paniculata_contig12826.1776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig12826:4993..5787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAACCCGATGCGTTCCCGCCGGAGATCTGGGAGTTGTTCCTCCA
AAGTAACCTCACGGCGCTTGGGGAGAAGTGTCGCTCGATCTGCCTAGGAT
CTACGATGCGGCGTACTTTGGCCGCTGTGGTGGTCAGGCAATACAAGCCG
AAGCTGGAGGAGGTTAACCTGTCGGAGCGGCAATATGGGGTAGCGGTCTC
GGGCGGCGCGGAGCTCATGAGCCTTCGAGCGAAAGCACACCAACAAGTGG
GGCATTGGCTTATCTCCGTCGACTATATCAATGCATTCAACTCGGTCAAG
CGGGCAGCGATCTTGGAAGAAGTGGCAATCCACACCCCAGGACTGACACC
GTTCGTAGCCAAATGCTATGGGGAAAAGCTGGTAGATATCATTTTCCAGA
TGGACACCGGTGAACGCAGGATAATGTCTTCGGAAACAGGAATCCACCAG
GGCGACGGACTGGGACCCGCCCTCTTCTGCATGCCCATCAGACCGTTCTT
GTGCAAGTGCCAAGAACAACTCGAGGCTCTGGGGGTAGGACTATTGGCCT
ACCTGGACGATCTGGGGCTTGCAATGGGGGAGCTGACGGAAGAAAACTTA
CGGGCGATCCATTTCCTCGTGCAAGAGCTAGCACGCATAGAAGTGCAGAT
CAACAACGCCAAGACGAAGGCGTTGTCCTCAATGAACCACACCCCCACCG
AAAGGGAGATCGCTACGCTGACGGCGATGGGTATCAGCGTCGCAGAGGGA
GGGGGGGCTGTGGTGGTGGGTACACCGTTTGGGACCGACGCATTTATGGA
AAAACCCGATGCGTTCCCGCCGGAGATCTGGGAGTTGTTCCTCCAAAGTA
ACCTCACGGCGCTTGGGGAGAAGTGTCGCTCGATCTGCCTAGGATCTACG
ATGCGGCGTACTTTGGCCGCTGTGGTGGTCAGGCAATACAAGCCGAAGCT
GGAGGAGGTTAACCTGTCGGAGCGGCAATATGGGGTAGCGGTCTCGGGCG
GCGCGGAGCTCATGAGCCTTCGAGCGAAAGCACACCAACAAGTGGGGCAT
TGGCTTATCTCCGTCGACTATATCAATGCATTCAACTCGGTCAAGCGGGC
AGCGATCTTGGAAGAAGTGGCAATCCACACCCCAGGACTGACACCGTTCG
TAGCCAAATGCTATGGGGAAAAGCTGGTAGATATCATTTTCCAGATGGAC
ACCGGTGAACGCAGGATAATGTCTTCGGAAACAGGAATCCACCAGGGCGA
CGGACTGGGACCCGCCCTCTTCTGCATGCCCATCAGACCGTTCTTGTGCA
AGTGCCAAGAACAACTCGAGGCTCTGGGGGTAGGACTATTGGCCTACCTG
GACGATCTGGGGCTTGCAATGGGGGAGCTGACGGAAGAAAACTTACGGGC
GATCCATTTCCTCGTGCAAGAGCTAGCACGCATAGAAGTGCAGATCAACA
ACGCCAAGACGAAGGCGTTGTCCTCAATGAACCACACCCCCACCGAAAGG
GAGATCGCTACGCTGACGGCGATGGGTATCAGCGTCGCAGAGGGAGGGGG
GGCTGTGGTGGTGGGTACACCGTTTGGGACCGACGCATTT
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