mRNA_H-paniculata_contig12826.1776.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.960e-66 Identity = 120/265 (45.28%), Postives = 168/265 (63.40%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDL-GLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L +T EN++ I LV EL + + +N K+ AL H TP ER + L G+ +AE G VVG P GTDA+
Sbjct: 55 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 316
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 228 bits (581), Expect = 5.680e-66 Identity = 119/267 (44.57%), Postives = 168/267 (62.92%), Query Frame = 1
Query: 1 MEKPDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
++ P AFPPE W L QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + + P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L ++T EN++ LV EL + + +N K+ AL H TPTER L G+ +AE G VVG P GTDA+
Sbjct: 420 IKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERR--PLGDAGLPIAEEG-ITVVGVPIGTDAY 683
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE) HSP 1 Score: 221 bits (564), Expect = 9.970e-66 Identity = 115/264 (43.56%), Postives = 164/264 (62.12%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
P+ PPE W L+ QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D +AFN+ KR I+ + A P + ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + LGV L AY+DD+ L +T EN++ I LV EL + + +N K+ AL H TP ER + L G+ +AE G VVG P GTDA+
Sbjct: 48 PNTVPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 308
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.500e-65 Identity = 120/264 (45.45%), Postives = 168/264 (63.64%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L +T EN++ I LV EL + + +N K+ AL H TP ER + L G+ +AE G VVG P GTDA+
Sbjct: 424 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 684
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 226 bits (575), Expect = 1.440e-64 Identity = 118/264 (44.70%), Postives = 166/264 (62.88%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L +T EN++ I LV EL + + +N K+ AL P ER + L G+ +AE G VVG P GTDA+
Sbjct: 445 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 705
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 204 bits (520), Expect = 4.930e-61 Identity = 101/230 (43.91%), Postives = 145/230 (63.04%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNHTPT 699
P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D N N+ KR AI+ + A P L +A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L +T E+++ I LV EL + + +N K+ AL H T
Sbjct: 101 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVT 329
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.400e-59 Identity = 92/198 (46.46%), Postives = 133/198 (67.17%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLR 603
P+AFPPE W L+ +S+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L +T EN++
Sbjct: 56 PNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQ 253
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 181 bits (458), Expect = 8.710e-49 Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 1
Query: 103 TMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALGVGLLAYLDDLGLAMGELTEENLRAIHFLVQELARIEVQINNAKTKALSSMNH--TPTEREIATLTAMGISVAEGGGAVVVGTPFGTDAF 795
T RR +AA VR++KPKLEE+ Q+G AV GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K + + + LGV L AY+DD+ L +T EN++ I +V EL + + +N K+ AL H TP ER + L G+ +AE G VVG P GTDA+
Sbjct: 2 TWRRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL--LGDAGLPIAEEG-ITVVGVPIGTDAY 231
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE) HSP 1 Score: 179 bits (454), Expect = 5.400e-48 Identity = 92/210 (43.81%), Postives = 132/210 (62.86%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCK--------------CQEQLEALGV--GLLAYLDDLGLAMGELTE 591
P+AFPPE W L+ QS+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A + P L ++A+CY E I+ MD+GERR + ++G+ QGDG+GP LFC + P + K +E + +GV G AY++D+ AM +TE
Sbjct: 374 PNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKRLLGDAGLPIAEEGITIVGVPIGTDAYVEDI--AMKVITE 581
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.380e-46 Identity = 81/175 (46.29%), Postives = 116/175 (66.29%), Query Frame = 1
Query: 10 PDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPKLEEVNLSERQYGVAVSGGAELMSLRAKAHQQVGHWLISVDYINAFNSVKRAAILEEVAIHTPGLTPFVAKCYGEKLVDIIFQMDTGERRIMSSETGIHQGDGLGPALFCMPIRPFLCKCQEQLEALG 534
P+AFPPE W L+ S+L ALGEKCR +C+G T RR +AA VR++KPKLEE+ Q+GVAV+GG E +++ A+ Q GHW++ D NAFN+ KR AI+ + A P L ++A+CY E I+ MD+GE R + ++G+ QGDG+GP LFC + P + K + + + LG
Sbjct: 431 PNAFPPEFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 605 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12826.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12826.1776.1 >prot_H-paniculata_contig12826.1776.1 ID=prot_H-paniculata_contig12826.1776.1|Name=mRNA_H-paniculata_contig12826.1776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp MEKPDAFPPEIWELFLQSNLTALGEKCRSICLGSTMRRTLAAVVVRQYKPback to top mRNA from alignment at H-paniculata_contig12826:4993..5787+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12826.1776.1 ID=mRNA_H-paniculata_contig12826.1776.1|Name=mRNA_H-paniculata_contig12826.1776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig12826:4993..5787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12826:4993..5787+ >mRNA_H-paniculata_contig12826.1776.1 ID=mRNA_H-paniculata_contig12826.1776.1|Name=mRNA_H-paniculata_contig12826.1776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig12826:4993..5787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |