mRNA_H-paniculata_contig12818.1773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12818.1773.1
Unique NamemRNA_H-paniculata_contig12818.1773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12818.1773.1 vs. uniprot
Match: D7FHD7_ECTSI (Indole-3-glycerol-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.330e-30
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 PYFCVMRQAEAGEAAAPDTPEYPLSSVLRKRAGTLSIVAEYRRILKSGFIDGILAPELLCPLFRNGGASCVAIATE 228
            P F ++ QAEAG+ A  D PEYPLS VLRK  GTLS+VAEYR+ILKSGFIDGILAPELLCPL RNGGA+C+A+ATE
Sbjct:   31 PVFQLLEQAEAGKGAG-DGPEYPLSDVLRKNKGTLSVVAEYRKILKSGFIDGILAPELLCPLLRNGGAACIAVATE 105
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BLAST of mRNA_H-paniculata_contig12818.1773.1 vs. uniprot
Match: A0A835YV94_9STRA (Indole-3-glycerol-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV94_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.300e-15
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 FCVMRQAEAGEAAAPDTPEYPLSSVLRKRAGTLSIVAEYRRILKSGFIDGILAPELLCPLFRNGGASCVAIATEK 231
            F  ++Q + G AAA   P   ++ VLRK  GTLS+VAEYRR L+SGFI  IL PELL P+FR+GGAS VAIA ++
Sbjct:   80 FEYLKQGQEG-AAAKARPSV-VTPVLRKMPGTLSVVAEYRRNLRSGFIASILEPELLSPMFRDGGASAVAIALDR 152
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BLAST of mRNA_H-paniculata_contig12818.1773.1 vs. uniprot
Match: K0S3T1_THAOC (Indole-3-glycerol-phosphate synthase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3T1_THAOC)

HSP 1 Score: 60.8 bits (146), Expect = 4.820e-9
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   70 LSSVLRKRAGTLSIVAEYRRILK-SGFIDGILAPELLCPLFRNGGASCVAIATEK 231
            L S+L KR GT+S+VAEY+R L+ SGF+  IL PE+L P+FR  GA+ VA+  ++
Sbjct:  104 LQSILTKRKGTISVVAEYKRKLEGSGFVTDILQPEILSPVFREFGAAAVAVLADE 158
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BLAST of mRNA_H-paniculata_contig12818.1773.1 vs. uniprot
Match: B8CAE6_THAPS (Indole-3-glycerol-phosphate synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAE6_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 8.140e-8
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   28 EAGEAAAPD--TPEYPLSSVLRKRAGTLSIVAEYRRILK-SGFIDGILAPELLCPLFRNGGASCVAIATEK 231
            +A + AA D  T    +  +L KR GT+SI+AEY+R L+ SGF+  IL PE+L P+FR  GA+ VA+  ++
Sbjct:   87 DAPDEAADDATTTVGEVQGLLTKRKGTISIIAEYKRKLEGSGFLSEILPPEILSPVFREFGATAVAVLADE 157
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BLAST of mRNA_H-paniculata_contig12818.1773.1 vs. uniprot
Match: A0A7S2JSA3_9STRA (Indole-3-glycerol-phosphate synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSA3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.860e-6
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   16 MRQAEAGEAAAPDTPEYPLSSVLRKRAGTLSIVAEYRRIL--KSGFIDGILAPELLCPLFRNGGASCVAIATEK 231
            M+ A A +   P     P+ + L KR GT++I+AEY+R     + FI  IL  ++L P+FR GGA+ +A+  ++
Sbjct:   72 MKSASAEKREGPG----PVQAALTKRKGTITIIAEYKRKFDENAAFISEILPADILSPVFREGGATAIAVMADE 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12818.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHD7_ECTSI1.330e-3075.00Indole-3-glycerol-phosphate synthase n=2 Tax=Ectoc... [more]
A0A835YV94_9STRA7.300e-1557.33Indole-3-glycerol-phosphate synthase n=1 Tax=Tribo... [more]
K0S3T1_THAOC4.820e-952.73Indole-3-glycerol-phosphate synthase (Fragment) n=... [more]
B8CAE6_THAPS8.140e-845.07Indole-3-glycerol-phosphate synthase n=1 Tax=Thala... [more]
A0A7S2JSA3_9STRA1.860e-636.49Indole-3-glycerol-phosphate synthase n=1 Tax=Lepto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12818contigH-paniculata_contig12818:5566..7266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1e-07
Seed eggNOG ortholog159749.K0S3T1
KEGG rclassRC00944
KEGG koko:K01609
KEGG ReactionR03508
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Indole-3-glycerol phosphate synthase
EggNOG OGs2XAWN@2836,COG0134@1,KOG4201@2759
Ec32 ortholog descriptionIndole-3-glycerol-phosphate synthase
Ec32 orthologEc-03_003850.1
EC4.1.1.48
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size234
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12818.1773.1prot_H-paniculata_contig12818.1773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12818 5581..7266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.6458673-UTR-H-paniculata_contig12818:5565..55801622929002.6458673-UTR-H-paniculata_contig12818:5565..5580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12818 5566..5580 +
1691480697.6194644-UTR-H-paniculata_contig12818:5565..55801691480697.6194644-UTR-H-paniculata_contig12818:5565..5580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12818 5566..5580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.6596243-CDS-H-paniculata_contig12818:5580..57071622929002.6596243-CDS-H-paniculata_contig12818:5580..5707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12818 5581..5707 +
1691480697.6302733-CDS-H-paniculata_contig12818:5580..57071691480697.6302733-CDS-H-paniculata_contig12818:5580..5707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12818 5581..5707 +
1622929002.6721914-CDS-H-paniculata_contig12818:7174..72661622929002.6721914-CDS-H-paniculata_contig12818:7174..7266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12818 7175..7266 +
1691480697.6376681-CDS-H-paniculata_contig12818:7174..72661691480697.6376681-CDS-H-paniculata_contig12818:7174..7266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12818 7175..7266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12818.1773.1

>prot_H-paniculata_contig12818.1773.1 ID=prot_H-paniculata_contig12818.1773.1|Name=mRNA_H-paniculata_contig12818.1773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MRQAEAGEAAAPDTPEYPLSSVLRKRAGTLSIVAEYRRILKSGFIDGILA
PELLCPLFRNGGASCVAIATEK*
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mRNA from alignment at H-paniculata_contig12818:5566..7266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12818.1773.1 ID=mRNA_H-paniculata_contig12818.1773.1|Name=mRNA_H-paniculata_contig12818.1773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1701bp|location=Sequence derived from alignment at H-paniculata_contig12818:5566..7266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTATTTTTGTGTGATGCGGCAGGCTGAGGCAGGAGAAGCGGCGGCACC
TGATACCCCAGAGTATCCCCTGTCTTCCGTCCTCCGAAAAAGAGCAGGGA
CTCTGTCTATCGTGGCTGAGTACAGAAGGATACTAAAATCTGGTCAGTGT
CGTTTTGTTGCCGTATTAATCATAATGTTGACTGTGGGCCATTTGTACGT
TAGCCTACCAAGTGACGAGTATACTGTACAATACAACGTTGGTGCATCAT
AATGCTGCGACAGTATTTCTGCTACATATATAGGCATTGTTGAAAACCAC
GAAAATGCACGTGCAGGTCGCGTTGTAGTATCGAATCCTCGTACCAATAT
AGTCATTAACCCTACAATCCTATCCTAACCCTAGCCCTAAAAAAAACACG
AGATTAGTTTTCATCGCCCATGACTCACGTCATGTAGGCATGTGTATGAA
TGATACAACGTATCTAAAGATTCGGTTCTTCGAAACTAATATGAGTACAG
TGTAAAGAAATAGCCCGAAATGACGACCACCTTGATCCTTTGACTCTCGT
TGTGGCATATGAAATGTCACAGTCCCGTTTCACAACAGGGGGGGGGTGCA
TTTTGAGGGCGGGGGGGGGGGGGTGTACCTTATTTTGACACGCATTTTTA
TTTTGTTTGCAGGGGTGTGATATCATATGCCGGTTTGTGAGATTTATACT
ACGAAACGAAAAGGATCATGTGACGCTAGGAGCGAAGGGGTCAAAGCTCG
TCATTTTTTTTCTGTCCAGTTTTTTATTTGATATTTTCGTGAAGATGTGG
GGGGTTTATGTCACTTGCAATATCCCAATCCTCGTGTCACGGAAATTTTC
CTTGTTTGCTTTTATTTGTTCAACGTATAATAAATATCTAAACAGCAGGG
TTATTTTACTGAGGGACCAATGGAGAGCAATCAGATGGTCACGCCTATCT
TGTACCATCTCGTGTACGGTGTTTAGCACGCCCAGTGATTCCATTTTTTC
AAGCTCTATTTTCGCCTGGAGCTAAAAGCTCTAATATTTTGTAGGGAACG
GTGGAAGCGTCTCGAGGGGAGAGAAATTTCCGAACTGGACTTTATGGGCA
ACAAAGCCCCATGTACCTTACAAAATGCACGCCGATCGACAGGTCTTGAT
GAGATCTATTAGATCTTCCCGACAACATCACTTTCGGTGTCTGCAGCAAG
CACCCTAAGCCTACGATAAAATAAATGGGCTTCGAATTGATGATCGCCCC
GGGGCGTTCACAACGCTACCCACGGTATCTGTCTAATGACGTAATAATGA
CAGACATATCTAGATGTGATCCTTACATTGGATGTGGCGACGTGCCCTTT
GAATTTTTTTCGTTTAAACACGCAAATTTCTTACACCACAAATTTGGACT
TTTTTAGTGCGTTTTTATCAATTTTATACTGCAAATTTGTAAAGTGTGTA
GAAAAAAACGATATTTGTGGGGTTGTGTATCGGTCCCAGGCGGCTTTTTT
TCGGTTCGTTGCGTGTTTTTGTGTGTTGATTGGGCTTGTCGCTGTTTTTT
TTTTTTTTTTTTTTTCTCCTTCACTTGATCTATATCTCTTGGCTGTGCTT
ACTCCGCAGGTTTTATCGACGGCATCTTGGCTCCCGAGCTTCTTTGTCCT
TTGTTTAGGAACGGAGGGGCCAGTTGTGTTGCGATCGCTACTGAAAAGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig12818:5566..7266+

>mRNA_H-paniculata_contig12818.1773.1 ID=mRNA_H-paniculata_contig12818.1773.1|Name=mRNA_H-paniculata_contig12818.1773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig12818:5566..7266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCAGGCTGAGGCAGGAGAAGCGGCGGCACCTGATACCCCAGAGTA
TCCCCTGTCTTCCGTCCTCCGAAAAAGAGCAGGGACTCTGTCTATCGTGG
CTGAGTACAGAAGGATACTAAAATCTGATGCGGCAGGCTGAGGCAGGAGA
AGCGGCGGCACCTGATACCCCAGAGTATCCCCTGTCTTCCGTCCTCCGAA
AAAGAGCAGGGACTCTGTCTATCGTGGCTGAGTACAGAAGGATACTAAAA
TCTGGTTTTATCGACGGCATCTTGGCTCCCGAGCTTCTTTGTCCTTTGTT
TAGGAACGGAGGGGCCAGTTGTGTTGCGATCGCTACTGAAAAGTGAGTTT
TATCGACGGCATCTTGGCTCCCGAGCTTCTTTGTCCTTTGTTTAGGAACG
GAGGGGCCAGTTGTGTTGCGATCGCTACTGAAAAGTGA
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