mRNA_H-paniculata_contig1281.1768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1281.1768.1
Unique NamemRNA_H-paniculata_contig1281.1768.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1281.1768.1 vs. uniprot
Match: A0A6H5K8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.430e-16
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 SGGRGLPVVELPSCPGRFVLKGTFGFVPRPHAARARHNVRTALGAFKILGGARGGGAWL-GAEAILEGDFEAMWRLLGQIH 240
            SGGRGLP+ E+PSCPGRFVLKGT G     +AARA+HNVR+AL AF  LGG   GG WL G  AILEGD EA W L+  ++
Sbjct:  487 SGGRGLPLSEIPSCPGRFVLKGTCG--APANAARAKHNVRSALSAFAALGGI--GGTWLRGETAILEGDHEATWGLIYDVY 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1281.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8B2_9PHAE2.430e-1662.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1281contigH-paniculata_contig1281:7502..9422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1181
Cds size1179
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.3117576-CDS-H-paniculata_contig1281:7501..77111622929002.3117576-CDS-H-paniculata_contig1281:7501..7711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1281 7502..7711 +
1691480697.4959664-CDS-H-paniculata_contig1281:7501..77111691480697.4959664-CDS-H-paniculata_contig1281:7501..7711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1281 7502..7711 +
1622929002.328051-CDS-H-paniculata_contig1281:8451..94201622929002.328051-CDS-H-paniculata_contig1281:8451..9420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1281 8452..9420 +
1691480697.507289-CDS-H-paniculata_contig1281:8451..94201691480697.507289-CDS-H-paniculata_contig1281:8451..9420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1281 8452..9420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1281.1768.1prot_H-paniculata_contig1281.1768.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1281 7502..9420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1281.1768.1

>prot_H-paniculata_contig1281.1768.1 ID=prot_H-paniculata_contig1281.1768.1|Name=mRNA_H-paniculata_contig1281.1768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp
SGGRGLPVVELPSCPGRFVLKGTFGFVPRPHAARARHNVRTALGAFKILG
GARGGGAWLGAEAILEGDFEAMWRLLGQIHTAFGRPRATRRHREISIDRN
RHPMRSSRSVKPPPPDNSLLAMSTDVLKNADGAAAGAKVVEGKRRQDDTN
KKAMSRDVFNVFAAVASSSKTKGKCIQRQNVPPPIPPPSPSPPPVDAVER
YEDVHHLAVSLGSKKDNINRGANRVNSVALGSFRTETIGSSSTMFSRSIA
DHDTRNIPCRRPGSPRVAPTATDGGNGGGSIHASPRGGSSTHPIAGIVRE
RAASIATAGVGRPTSTTGTDRKRLTRSPSGSSVSRGQQQPPPQPCELSAT
DKPAALSWRRSFCSAAKNVVFSCPAATAQAVDSSSGMVRHVLP
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mRNA from alignment at H-paniculata_contig1281:7502..9422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1281.1768.1 ID=mRNA_H-paniculata_contig1281.1768.1|Name=mRNA_H-paniculata_contig1281.1768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1921bp|location=Sequence derived from alignment at H-paniculata_contig1281:7502..9422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGGTGGCCGAGGGTTGCCAGTGGTCGAATTGCCGTCCTGCCCCGGGCG
CTTCGTGTTGAAGGGAACCTTCGGTTTTGTGCCGAGACCACACGCGGCAA
GAGCGAGACATAACGTCAGAACCGCGCTAGGCGCGTTCAAGATTTTGGGG
GGAGCCCGCGGCGGCGGGGCCTGGCTAGGGGCCGAAGCTATTCTTGAAGG
AGATTTCGAGGTGACTACAGAAACGGTACAATACCCGTCCGCTCATAAAA
ATAATGTCTAAATGAAATAAATTGAAGCCTAAGATTCTTAAAACTTCAAG
GACGTTGACGAAAGAAATCGATCGCAAATCGTAGCCCCATTCGCATCCCT
GTGTAAGAATGATAGGAAAAGGGTGCTTCCTTGATTCGCCGAAACACGAG
ACGTATCCTGAGCCTGATTTTCAGGTTCTCATCAGCAAGTCGGTACTTTA
TTGCGGTTCATGAAACCTATTGTATTTAAGGTGGCCTGTTAACTATACCG
TAGAGGGAGTCACCTTGACTCTCAAGCTGCTGGATTTTTAAATGGTTTCG
CCGCTTTCTCCACAACCTTCGTCTCGTACACTTGATGTTGCTGTCTTCTT
CTCGTTTTACGACAGAGGGTACCCCCCTTTCGTGCACCAGGGCACCCTCT
CTTTGAGGTAGAAAGCGATTGTTCAGAACAGCAAGCAAAACAGCTCGACG
CAGGTATCGAAACCGGCCAAGATCAATAAAATGATCTCACGCGATTAAGG
CGGTTGGAGTAGCCAGGCTCTCAAAAATTATTGTGATTGTAAACTCTATC
GTGGAACGCCTTATTCACTCGCAGAGGAAAGGTAGACCCACCACCGTCAA
ACCGTTTCATCGCTATCCCAACGATGCCCTCATTGCCCCTGCACCAGCCG
CACACCTCAAACCTCGAACGTACACCCACGATACGCACCACGAATCACAG
GCAATGTGGAGACTCCTTGGACAAATCCACACTGCCTTCGGGCGGCCACG
AGCAACGCGTCGGCACCGAGAAATCTCCATAGATCGCAACAGACACCCCA
TGCGCAGTTCCCGTTCGGTCAAGCCTCCGCCCCCGGATAATTCCTTGTTG
GCAATGAGCACGGACGTGTTAAAAAACGCTGACGGCGCCGCTGCTGGTGC
GAAGGTAGTTGAGGGCAAAAGGAGACAAGACGATACGAACAAAAAGGCAA
TGAGCAGGGATGTTTTCAACGTGTTCGCCGCCGTTGCTTCGAGCTCGAAG
ACAAAGGGGAAATGTATTCAAAGGCAAAACGTCCCACCACCAATCCCCCC
ACCGTCGCCGTCCCCACCGCCAGTCGATGCCGTCGAACGCTATGAGGACG
TACATCATCTCGCCGTATCTCTTGGGAGCAAAAAAGACAATATTAACCGA
GGAGCCAATAGAGTCAATAGCGTCGCACTTGGCAGCTTCAGAACCGAAAC
GATTGGTAGCAGCTCTACCATGTTCAGTCGTTCGATCGCGGATCACGATA
CTCGGAATATCCCCTGCCGCCGTCCAGGTTCACCGCGCGTGGCCCCAACC
GCTACCGACGGCGGCAACGGAGGTGGTAGTATTCATGCCAGTCCCCGTGG
TGGTAGTAGTACCCACCCTATTGCTGGTATCGTTCGGGAAAGGGCAGCAT
CCATCGCTACTGCAGGAGTCGGTCGGCCGACGTCTACGACCGGGACAGAT
CGCAAGAGGCTGACACGCTCACCTTCTGGTTCTTCAGTTTCTCGCGGACA
GCAGCAACCCCCACCTCAACCATGCGAGCTTTCTGCGACCGACAAGCCCG
CGGCGTTGTCCTGGAGAAGAAGCTTCTGTTCCGCGGCGAAAAATGTCGTA
TTTTCATGTCCCGCCGCCACCGCCCAGGCGGTCGACTCCTCTTCCGGCAT
GGTTAGACACGTCTTGCCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1281:7502..9422+

>mRNA_H-paniculata_contig1281.1768.1 ID=mRNA_H-paniculata_contig1281.1768.1|Name=mRNA_H-paniculata_contig1281.1768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig1281:7502..9422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGGTGGCCGAGGGTTGCCAGTGGTCGAATTGCCGTCCTGCCCCGGGCG
CTTCGTGTTGAAGGGAACCTTCGGTTTTGTGCCGAGACCACACGCGGCAA
GAGCGAGACATAACGTCAGAACCGCGCTAGGCGCGTTCAAGATTTTGGGG
GGAGCCCGCGGCGGCGGGGCCTGGCTAGGGGCCGAAGCTATTCTTGAAGG
AGATTTCGAGTCAGGTGGCCGAGGGTTGCCAGTGGTCGAATTGCCGTCCT
GCCCCGGGCGCTTCGTGTTGAAGGGAACCTTCGGTTTTGTGCCGAGACCA
CACGCGGCAAGAGCGAGACATAACGTCAGAACCGCGCTAGGCGCGTTCAA
GATTTTGGGGGGAGCCCGCGGCGGCGGGGCCTGGCTAGGGGCCGAAGCTA
TTCTTGAAGGAGATTTCGAGGCAATGTGGAGACTCCTTGGACAAATCCAC
ACTGCCTTCGGGCGGCCACGAGCAACGCGTCGGCACCGAGAAATCTCCAT
AGATCGCAACAGACACCCCATGCGCAGTTCCCGTTCGGTCAAGCCTCCGC
CCCCGGATAATTCCTTGTTGGCAATGAGCACGGACGTGTTAAAAAACGCT
GACGGCGCCGCTGCTGGTGCGAAGGTAGTTGAGGGCAAAAGGAGACAAGA
CGATACGAACAAAAAGGCAATGAGCAGGGATGTTTTCAACGTGTTCGCCG
CCGTTGCTTCGAGCTCGAAGACAAAGGGGAAATGTATTCAAAGGCAAAAC
GTCCCACCACCAATCCCCCCACCGTCGCCGTCCCCACCGCCAGTCGATGC
CGTCGAACGCTATGAGGACGTACATCATCTCGCCGTATCTCTTGGGAGCA
AAAAAGACAATATTAACCGAGGAGCCAATAGAGTCAATAGCGTCGCACTT
GGCAGCTTCAGAACCGAAACGATTGGTAGCAGCTCTACCATGTTCAGTCG
TTCGATCGCGGATCACGATACTCGGAATATCCCCTGCCGCCGTCCAGGTT
CACCGCGCGTGGCCCCAACCGCTACCGACGGCGGCAACGGAGGTGGTAGT
ATTCATGCCAGTCCCCGTGGTGGTAGTAGTACCCACCCTATTGCTGGTAT
CGTTCGGGAAAGGGCAGCATCCATCGCTACTGCAGGAGTCGGTCGGCCGA
CGTCTACGACCGGGACAGATCGCAAGAGGCTGACACGCTCACCTTCTGGT
TCTTCAGTTTCTCGCGGACAGCAGCAACCCCCACCTCAACCATGCGAGCT
TTCTGCGACCGACAAGCCCGCGGCGTTGTCCTGGAGAAGAAGCTTCTGTT
CCGCGGCGAAAAATGTCGTATTTTCATGTCCCGCCGCCACCGCCCAGGCG
GTCGACTCCTCTTCCGGCATGGTTAGACACGTCTTGCCGGCAATGTGGAG
ACTCCTTGGACAAATCCACACTGCCTTCGGGCGGCCACGAGCAACGCGTC
GGCACCGAGAAATCTCCATAGATCGCAACAGACACCCCATGCGCAGTTCC
CGTTCGGTCAAGCCTCCGCCCCCGGATAATTCCTTGTTGGCAATGAGCAC
GGACGTGTTAAAAAACGCTGACGGCGCCGCTGCTGGTGCGAAGGTAGTTG
AGGGCAAAAGGAGACAAGACGATACGAACAAAAAGGCAATGAGCAGGGAT
GTTTTCAACGTGTTCGCCGCCGTTGCTTCGAGCTCGAAGACAAAGGGGAA
ATGTATTCAAAGGCAAAACGTCCCACCACCAATCCCCCCACCGTCGCCGT
CCCCACCGCCAGTCGATGCCGTCGAACGCTATGAGGACGTACATCATCTC
GCCGTATCTCTTGGGAGCAAAAAAGACAATATTAACCGAGGAGCCAATAG
AGTCAATAGCGTCGCACTTGGCAGCTTCAGAACCGAAACGATTGGTAGCA
GCTCTACCATGTTCAGTCGTTCGATCGCGGATCACGATACTCGGAATATC
CCCTGCCGCCGTCCAGGTTCACCGCGCGTGGCCCCAACCGCTACCGACGG
CGGCAACGGAGGTGGTAGTATTCATGCCAGTCCCCGTGGTGGTAGTAGTA
CCCACCCTATTGCTGGTATCGTTCGGGAAAGGGCAGCATCCATCGCTACT
GCAGGAGTCGGTCGGCCGACGTCTACGACCGGGACAGATCGCAAGAGGCT
GACACGCTCACCTTCTGGTTCTTCAGTTTCTCGCGGACAGCAGCAACCCC
CACCTCAACCATGCGAGCTTTCTGCGACCGACAAGCCCGCGGCGTTGTCC
TGGAGAAGAAGCTTCTGTTCCGCGGCGAAAAATGTCGTATTTTCATGTCC
CGCCGCCACCGCCCAGGCGGTCGACTCCTCTTCCGGCATGGTTAGACACG
TCTTGCCG
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