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Homology
BLAST of mRNA_H-paniculata_contig128.1761.1 vs. uniprot
Match: D7FTS4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS4_ECTSI) HSP 1 Score: 323 bits (827), Expect = 3.610e-98 Identity = 260/646 (40.25%), Postives = 343/646 (53.10%), Query Frame = 1
Query: 211 SRPFRIITESAVTSSEKDPLIQDLFTSSSPVDGEKDSGNSNFIGKAEPV--LTLIGFEVVSRLRHFLVVARESWAIRSTVTSGGSIAQVLTSSRGAAKRYIAGIHEATSGQLRNQN-------NAQIEIMVDLANELLLDRAVKQTFFSTGNIFFEITRWLEQEGEE------------DIVSENSG-DALRLLVKDMRWFSAAAAVLNSAFFHSIEVPERIDLVARPIPVSIPRVSELLVDVYFSLRRRLAQFGHDNRGCAEEEKCNNISSHGLTPAGFGGRNGGXXXXXXXXXMAAKTANTDDLEKLSTSMGDWLVGALNGMGEAVRLFNLENERKGLVRNLVSVTIGQYYRSRSQPAASDASGLLMTLTERTAGLIEHLNRVEQTR--LQELEILRRQREKDSPPATPKPPFRKVDRKRGKRSSFFGLRPLSPAT--SVTPPGSPS----EPPAAQSTVGHNGPPKQRLAFHADRGLRSASSMGHTLTKEGSLQKVDLPQPKNCVNSLSGNDTGGFGTNSHHGELDNSNEDETQRQKGL--RRDGTASLLSAP-----------TSMPRALLLNTPVLLYSYSKLLHALVCGSYDLRAAFVVKCEAELRNIGRDGGYLDLLAMLDGGAPRMVFRESARFLHEI 2019
SRPFRI T+++K L S V D G A+ + L+GFE + RLRHFLVVA ESWAIR+ V G ++L+ + AA+RY+AG+ E +G LR+Q +AQ+E+M DLA+E++LD VK+ FFSTG+IFFEI+R LE +I + G D R +V D R SA AAVL++AFFHSI++P+RIDLV RP P+S+P V+E LV VY +L RR+ D ++ + G +PAG A+ A + L+ LST + D +V ALNG+ + V LFN+E+E G+VRNLV V +G R QPAASDA ++ + +R LIE L+R EQ R L+E +L P + P K K KRS F L LSP SVTPP SP EPP + N R + + G SAS T + K Q K+ V++ SG GG GL RR G S+ S P S PR L + PVLL+SY+KLL+ALVCGSY+LR AF CE ++RNIGR+GGYLD+L+ LDGGAPR+VFR++A FLHEI
Sbjct: 3 SRPFRI------TAAKK------LAHCESAVGSAADKGPETSASGADEHRHILLVGFEDICRLRHFLVVACESWAIRNGV--GTRAKELLSCAPVAAQRYLAGVLEVMTGPLRDQVLQTEGTVDAQVELMQDLADEMILDAVVKEAFFSTGDIFFEISRRLEAAAATVAAGSAVNTAAGEIAFRHDGFDGRRAVVSDARLISATAAVLDAAFFHSIQIPQRIDLVGRPKPMSLPAVAEHLVFVYCALCRRIVTNCEDGADNSDIDTGGRNDLKGFSPAGV--------------ERLAEDAMSP-LDALSTGVLDRVVRALNGISDVVSLFNIEHEHLGIVRNLVGVGLGVKVRVGIQPAASDALAFVVRVNDRAVDLIEDLDRREQERRQLEEARLLA------LGPVSVSPTSEKNKGK--KRSVFARLGSLSPRPRRSVTPPLSPPSPAVEPPVGLPPINDNS--DVRTNYILEGGSGSASKT----TARAGVPK----QEKSDVDNASGGLLGGL--------------------VGLEGRRGGGNSVGSPPPPSATQCFESQVSSPRGFLSSAPVLLHSYAKLLNALVCGSYNLREAFFSSCEVDIRNIGREGGYLDVLSRLDGGAPRLVFRQTALFLHEI 581
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Model size | 2042 |
| Cds size | 2040 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig128.1761.1 >prot_H-paniculata_contig128.1761.1 ID=prot_H-paniculata_contig128.1761.1|Name=mRNA_H-paniculata_contig128.1761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=680bp
PCIAALSSWSLFMVPLRAPWSVGGFIADFRSKQHSAAKIIEVPLSSMLEV GVVSARENLNTFASDEANNWSRPFRIITESAVTSSEKDPLIQDLFTSSSP VDGEKDSGNSNFIGKAEPVLTLIGFEVVSRLRHFLVVARESWAIRSTVTS GGSIAQVLTSSRGAAKRYIAGIHEATSGQLRNQNNAQIEIMVDLANELLL DRAVKQTFFSTGNIFFEITRWLEQEGEEDIVSENSGDALRLLVKDMRWFS AAAAVLNSAFFHSIEVPERIDLVARPIPVSIPRVSELLVDVYFSLRRRLA QFGHDNRGCAEEEKCNNISSHGLTPAGFGGRNGGSGGDEGRVGMAAKTAN TDDLEKLSTSMGDWLVGALNGMGEAVRLFNLENERKGLVRNLVSVTIGQY YRSRSQPAASDASGLLMTLTERTAGLIEHLNRVEQTRLQELEILRRQREK DSPPATPKPPFRKVDRKRGKRSSFFGLRPLSPATSVTPPGSPSEPPAAQS TVGHNGPPKQRLAFHADRGLRSASSMGHTLTKEGSLQKVDLPQPKNCVNS LSGNDTGGFGTNSHHGELDNSNEDETQRQKGLRRDGTASLLSAPTSMPRA LLLNTPVLLYSYSKLLHALVCGSYDLRAAFVVKCEAELRNIGRDGGYLDL LAMLDGGAPRMVFRESARFLHEICIECEM* back to topmRNA from alignment at H-paniculata_contig128:39696..42813+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig128.1761.1 ID=mRNA_H-paniculata_contig128.1761.1|Name=mRNA_H-paniculata_contig128.1761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3118bp|location=Sequence derived from alignment at H-paniculata_contig128:39696..42813+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CCCTGCATCGCTGCGCTGTCCAGCTGGAGTCTGTTCATGGTTCCCCTGCG
CGCACCCTGGTCTGTTGGGGGATTCATTGCCGACTTTCGATCAAAGCAGC
ACAGTGCTGCGAAGATAATCGAAGTGCCGCTGAGCTCCATGCTCGAAGTT
GGAGTAGTCAGTGCTCGCGAGAATCTCAACACCTTCGCCAGCGACGAGGC
TAATAATTGGTCGCGCCCATTCCGTATCATAACTGAATCAGCAGTAACAT
CTTCCGAAAAAGATCCACTGATACAAGATTTGTTCACATCCTCGTCCCCA
GTCGACGGGGAAAAGGACAGTGGCAATAGCAACTTTATAGGAAAAGCCGA
GCCGGTATTGACATTGATTGGATTTGAGGTGGTGAGCAGGCTGCGACATT
TCTTGGTGGTAGCTCGCGAGAGCTGGGCGATCAGAAGCACAGTTACTTCC
GGGGGCAGTATCGCTCAGGTTCTGACATCTAGCAGGGGTGCTGCGAAGAG
ATACATCGCCGGGATTCATGAGGCCACGTCCGGGCAGTTACGCAACCAGG
TACATCTATTGGGCTACAACCTTCGGCATGCAGAGTGACCTGAACAACAG
GTAGCACTGATTCAAGGAAAACTCTCGAGCGCCAAAACTGCACCAGCAGA
TGCTCACTAAAAACATTATTCTTTAGTTCCCTCACATCACCCATATCGAC
GGGATGAGTTCTACACAGAACTTACTTACAATAGTTTCTGCTAGGTGATC
ATTGTATTGAAAGAACCCATGGACATGGACTTTCTCTCTCTTGTACGTCA
CCTGAAATATTGACCGATTGCATTGTGTTCGTCCGCCCGCCCGCGTGTTT
CTCGAAGAACCTGCTGAACTTTGAAAATCGCCTAAGGAAAATAGCATGTC
AAATGCTTCACGTAAAACCGTACCCTCCTGTTTGATTGTTTGGCGCTCCA
CCTGGGAGGAGTTCGTGTCTATCGCACTGTAACTTCCTCCCGTCTCCCCT
CCCCCCGCGTTTCTCGTCGAAATCGTCAAACCGTGCCTCCTCAGAACAAC
GCTCAGATCGAAATCATGGTAGATCTTGCCAACGAATTGCTGCTTGACAG
GGCAGTCAAGCAGACGTTTTTTTCAACCGGCAACATTTTCTTCGAAATCA
CCCGTTGGCTCGAACAAGAAGGGGAGGAAGACATCGTCTCAGAGAACAGC
GGGGACGCCCTCCGACTTCTTGTCAAGGACATGCGGTGGTTTTCGGCAGC
GGCTGCAGTGCTAAATTCCGCATTTTTTCACAGCATCGAAGTACCCGAGA
GGATCGATCTCGTGGCACGCCCAATACCCGTTTCGATACCAAGGGTTTCT
GAACTTCTTGTCGATGTATACTTCAGCTTGCGCCGCAGATTGGCGCAATT
TGGACACGATAATCGTGGCTGCGCTGAGGAAGAAAAGTGTAACAATATAT
CTTCACACGGTTTGACTCCGGCAGGTTTCGGGGGGCGAAACGGTGGCAGT
GGCGGAGACGAAGGTCGTGTAGGAATGGCGGCGAAGACAGCGAACACTGA
TGACCTGGAGAAATTGTCAACGTCCATGGGAGACTGGCTTGTTGGTGCAC
TCAATGGCATGGGCGAGGTAATATGTCCACCCCTGGGTTTTAGTGGTCAA
CTGGAACTCCTGATTCCGTTGATGATACCTTAGATGCCACAGAGAGTGTG
TCACAGCTCCTGCGTCCTACAACGGATGGTTTCAAAGAGGATTGCCTGTG
TCCACCGGGCAAAACGATGCGCAAAAAACAGCATCATTGAGGTATAGCTT
GAGATTTGCAAATAATTCATCCCCCGGACAAATACGAATACTTGGCGTAC
TCGCCACGAAAATTAAAAACGTATTCGCCTGAGCTTCAAAATGATCTCGT
GTATTCTATGTGCCCCGTACCATTCACGACTGCTAATAATAATCGTAAAT
CCAATGGAAAGGGGTGGGTACTTTATTCGATGTGTCCGCTCATTCTGAAA
CTCAGGCGAATTCGCTTTAAATTTCGTGGGGGGGAAACGTTTGCAGTGTA
CCCAAAGTGGCGTTAAAGTTGTCCATTGCTTCAAACCTGGAACCTGCCCA
CGAAGATCCGACAAGAATATGACAAAATCCCTCTCTATACCACCCCCGCC
TCGCACCCCCGTCTTCCTATCAAACATTGACAACTGGCGAATTTTACGAG
GCTGTTCGCCTCTTCAACCTTGAGAACGAGCGCAAGGGACTCGTGCGCAA
CTTAGTGAGCGTTACGATCGGCCAGTATTACCGGAGTCGATCACAACCGG
CGGCGTCCGACGCATCGGGGCTTCTCATGACCCTAACGGAAAGGACTGCA
GGGCTCATTGAGCACCTCAACCGTGTGGAACAAACGCGTCTCCAAGAACT
AGAGATATTGAGGAGACAAAGGGAGAAGGATAGTCCGCCCGCTACACCGA
AGCCTCCTTTTAGAAAAGTAGACAGAAAGAGGGGGAAGAGGAGCTCTTTC
TTTGGCCTACGTCCTCTCTCCCCTGCCACTTCAGTGACCCCCCCCGGCTC
CCCTTCGGAGCCACCTGCCGCACAGTCGACCGTGGGGCACAATGGACCGC
CGAAGCAGCGTTTAGCTTTTCACGCCGACCGTGGATTGCGATCGGCATCT
TCCATGGGACACACACTGACGAAGGAGGGCTCCCTGCAGAAGGTCGATCT
CCCACAGCCGAAAAACTGCGTGAATAGCCTGTCCGGAAATGATACAGGCG
GCTTCGGCACGAACAGTCACCACGGAGAGTTAGACAATAGCAACGAGGAT
GAAACGCAGCGGCAGAAGGGTCTACGAAGAGACGGAACCGCCTCGTTGCT
CTCAGCTCCCACGAGTATGCCGCGGGCCTTGCTGTTGAATACACCCGTGC
TTCTTTACTCCTACTCGAAGCTGCTGCACGCGCTGGTATGTGGAAGTTAT
GACCTTCGCGCCGCATTTGTAGTAAAGTGCGAAGCTGAGCTAAGGAACAT
AGGACGGGATGGGGGATACTTGGACCTGTTGGCCATGCTGGATGGAGGCG
CGCCGCGCATGGTCTTTCGAGAGTCTGCTCGCTTCCTGCATGAAATTTGT
ATCGAATGTGAAATGTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig128:39696..42813+ >mRNA_H-paniculata_contig128.1761.1 ID=mRNA_H-paniculata_contig128.1761.1|Name=mRNA_H-paniculata_contig128.1761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4080bp|location=Sequence derived from alignment at H-paniculata_contig128:39696..42813+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CCCTGCATCGCTGCGCTGTCCAGCTGGAGTCTGTTCATGGTTCCCCTGCG CGCACCCTGGTCTGTTGGGGGATTCATTGCCGACTTTCGATCAAAGCAGC ACAGTGCTGCGAAGATAATCGAAGTGCCGCTGAGCTCCATGCTCGAAGTT GGAGTAGTCAGTGCTCGCGAGAATCTCAACACCTTCGCCAGCGACGAGGC TAATAATTGGTCGCGCCCATTCCGTATCATAACTGAATCAGCAGTAACAT CTTCCGAAAAAGATCCACTGATACAAGATTTGTTCACATCCTCGTCCCCA GTCGACGGGGAAAAGGACAGTGGCAATAGCAACTTTATAGGAAAAGCCGA GCCGGTATTGACATTGATTGGATTTGAGGTGGTGAGCAGGCTGCGACATT TCTTGGTGGTAGCTCGCGAGAGCTGGGCGATCAGAAGCACAGTTACTTCC GGGGGCAGTATCGCTCAGGTTCTGACATCTAGCAGGGGTGCTGCGAAGAG ATACATCGCCGGGATTCATGAGGCCACGTCCGGGCAGTTACGCAACCAGC CCTGCATCGCTGCGCTGTCCAGCTGGAGTCTGTTCATGGTTCCCCTGCGC GCACCCTGGTCTGTTGGGGGATTCATTGCCGACTTTCGATCAAAGCAGCA CAGTGCTGCGAAGATAATCGAAGTGCCGCTGAGCTCCATGCTCGAAGTTG GAGTAGTCAGTGCTCGCGAGAATCTCAACACCTTCGCCAGCGACGAGGCT AATAATTGGTCGCGCCCATTCCGTATCATAACTGAATCAGCAGTAACATC TTCCGAAAAAGATCCACTGATACAAGATTTGTTCACATCCTCGTCCCCAG TCGACGGGGAAAAGGACAGTGGCAATAGCAACTTTATAGGAAAAGCCGAG CCGGTATTGACATTGATTGGATTTGAGGTGGTGAGCAGGCTGCGACATTT CTTGGTGGTAGCTCGCGAGAGCTGGGCGATCAGAAGCACAGTTACTTCCG GGGGCAGTATCGCTCAGGTTCTGACATCTAGCAGGGGTGCTGCGAAGAGA TACATCGCCGGGATTCATGAGGCCACGTCCGGGCAGTTACGCAACCAGAA CAACGCTCAGATCGAAATCATGGTAGATCTTGCCAACGAATTGCTGCTTG ACAGGGCAGTCAAGCAGACGTTTTTTTCAACCGGCAACATTTTCTTCGAA ATCACCCGTTGGCTCGAACAAGAAGGGGAGGAAGACATCGTCTCAGAGAA CAGCGGGGACGCCCTCCGACTTCTTGTCAAGGACATGCGGTGGTTTTCGG CAGCGGCTGCAGTGCTAAATTCCGCATTTTTTCACAGCATCGAAGTACCC GAGAGGATCGATCTCGTGGCACGCCCAATACCCGTTTCGATACCAAGGGT TTCTGAACTTCTTGTCGATGTATACTTCAGCTTGCGCCGCAGATTGGCGC AATTTGGACACGATAATCGTGGCTGCGCTGAGGAAGAAAAGTGTAACAAT ATATCTTCACACGGTTTGACTCCGGCAGGTTTCGGGGGGCGAAACGGTGG CAGTGGCGGAGACGAAGGTCGTGTAGGAATGGCGGCGAAGACAGCGAACA CTGATGACCTGGAGAAATTGTCAACGTCCATGGGAGACTGGCTTGTTGGT GCACTCAATGGCATGGGCGAGAACAACGCTCAGATCGAAATCATGGTAGA TCTTGCCAACGAATTGCTGCTTGACAGGGCAGTCAAGCAGACGTTTTTTT CAACCGGCAACATTTTCTTCGAAATCACCCGTTGGCTCGAACAAGAAGGG GAGGAAGACATCGTCTCAGAGAACAGCGGGGACGCCCTCCGACTTCTTGT CAAGGACATGCGGTGGTTTTCGGCAGCGGCTGCAGTGCTAAATTCCGCAT TTTTTCACAGCATCGAAGTACCCGAGAGGATCGATCTCGTGGCACGCCCA ATACCCGTTTCGATACCAAGGGTTTCTGAACTTCTTGTCGATGTATACTT CAGCTTGCGCCGCAGATTGGCGCAATTTGGACACGATAATCGTGGCTGCG CTGAGGAAGAAAAGTGTAACAATATATCTTCACACGGTTTGACTCCGGCA GGTTTCGGGGGGCGAAACGGTGGCAGTGGCGGAGACGAAGGTCGTGTAGG AATGGCGGCGAAGACAGCGAACACTGATGACCTGGAGAAATTGTCAACGT CCATGGGAGACTGGCTTGTTGGTGCACTCAATGGCATGGGCGAGGCTGTT CGCCTCTTCAACCTTGAGAACGAGCGCAAGGGACTCGTGCGCAACTTAGT GAGCGTTACGATCGGCCAGTATTACCGGAGTCGATCACAACCGGCGGCGT CCGACGCATCGGGGCTTCTCATGACCCTAACGGAAAGGACTGCAGGGCTC ATTGAGCACCTCAACCGTGTGGAACAAACGCGTCTCCAAGAACTAGAGAT ATTGAGGAGACAAAGGGAGAAGGATAGTCCGCCCGCTACACCGAAGCCTC CTTTTAGAAAAGTAGACAGAAAGAGGGGGAAGAGGAGCTCTTTCTTTGGC CTACGTCCTCTCTCCCCTGCCACTTCAGTGACCCCCCCCGGCTCCCCTTC GGAGCCACCTGCCGCACAGTCGACCGTGGGGCACAATGGACCGCCGAAGC AGCGTTTAGCTTTTCACGCCGACCGTGGATTGCGATCGGCATCTTCCATG GGACACACACTGACGAAGGAGGGCTCCCTGCAGAAGGTCGATCTCCCACA GCCGAAAAACTGCGTGAATAGCCTGTCCGGAAATGATACAGGCGGCTTCG GCACGAACAGTCACCACGGAGAGTTAGACAATAGCAACGAGGATGAAACG CAGCGGCAGAAGGGTCTACGAAGAGACGGAACCGCCTCGTTGCTCTCAGC TCCCACGAGTATGCCGCGGGCCTTGCTGTTGAATACACCCGTGCTTCTTT ACTCCTACTCGAAGCTGCTGCACGCGCTGGTATGTGGAAGTTATGACCTT CGCGCCGCATTTGTAGTAAAGTGCGAAGCTGAGCTAAGGAACATAGGACG GGATGGGGGATACTTGGACCTGTTGGCCATGCTGGATGGAGGCGCGCCGC GCATGGTCTTTCGAGAGTCTGCTCGCTTCCTGCATGAAATTTGTATCGAA TGTGAAATGTGAGCTGTTCGCCTCTTCAACCTTGAGAACGAGCGCAAGGG ACTCGTGCGCAACTTAGTGAGCGTTACGATCGGCCAGTATTACCGGAGTC GATCACAACCGGCGGCGTCCGACGCATCGGGGCTTCTCATGACCCTAACG GAAAGGACTGCAGGGCTCATTGAGCACCTCAACCGTGTGGAACAAACGCG TCTCCAAGAACTAGAGATATTGAGGAGACAAAGGGAGAAGGATAGTCCGC CCGCTACACCGAAGCCTCCTTTTAGAAAAGTAGACAGAAAGAGGGGGAAG AGGAGCTCTTTCTTTGGCCTACGTCCTCTCTCCCCTGCCACTTCAGTGAC CCCCCCCGGCTCCCCTTCGGAGCCACCTGCCGCACAGTCGACCGTGGGGC ACAATGGACCGCCGAAGCAGCGTTTAGCTTTTCACGCCGACCGTGGATTG CGATCGGCATCTTCCATGGGACACACACTGACGAAGGAGGGCTCCCTGCA GAAGGTCGATCTCCCACAGCCGAAAAACTGCGTGAATAGCCTGTCCGGAA ATGATACAGGCGGCTTCGGCACGAACAGTCACCACGGAGAGTTAGACAAT AGCAACGAGGATGAAACGCAGCGGCAGAAGGGTCTACGAAGAGACGGAAC CGCCTCGTTGCTCTCAGCTCCCACGAGTATGCCGCGGGCCTTGCTGTTGA ATACACCCGTGCTTCTTTACTCCTACTCGAAGCTGCTGCACGCGCTGGTA TGTGGAAGTTATGACCTTCGCGCCGCATTTGTAGTAAAGTGCGAAGCTGA GCTAAGGAACATAGGACGGGATGGGGGATACTTGGACCTGTTGGCCATGC TGGATGGAGGCGCGCCGCGCATGGTCTTTCGAGAGTCTGCTCGCTTCCTG CATGAAATTTGTATCGAATGTGAAATGTGA back to top
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