mRNA_H-paniculata_contig12770.1742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12770.1742.1
Unique NamemRNA_H-paniculata_contig12770.1742.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12770.1742.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 4.750e-64
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = 1 
Query:  154 PPAQHSIGISADLFHMKHMEIALSQEEVERADLSGMTPGEVLVRFLEFFGRQFDPSRLGISVGRGALNNPFPLAPAVDPRTGMPVMDAHVVIEDPLKMDQNVSRSCFAFREVQCLFANCLSVLQLRGAEMAESDPDADLLQMLLYY 591
            P AQ+++G++A+LF+MKHMEI LSQEEV+RADLSGMTPGEVLVRFL FFGRQFDP+R+GISVGRGA++NPF L P+VDPRTGMPVM+AHVVIEDPL  DQNV+RSCF F +VQ LF   LSVLQ RGA+MAE D DADLLQMLLYY
Sbjct: 1947 PQAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPSVDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQYLSVLQERGADMAEFDRDADLLQMLLYY 2092
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BLAST of mRNA_H-paniculata_contig12770.1742.1 vs. uniprot
Match: A0A835Z4K4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.050e-26
Identity = 71/159 (44.65%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:  139 TQAMGPPAQHSIGISADLFHMKHMEIALSQEEVERADLSGMTPGEVLVRFLEFFGRQFDPSRLGISVGRGALNNPFPLAPAVDPRTGMPVMDAHVVIEDPLKMDQN--------VSRSCFAFREVQCLFANCLSVLQLRGAEMAESDPDADLLQMLLYY 591
            T A    A + +G   D F +   +  +++ E+E  DLS MTPG  L++FL F+ R FDP   GISVGRG L +PFPL   VD  TG+    A + IEDPL M +N        VS SCF F EVQ LF+ CL+ L++RG E    +PD +LLQ L  Y
Sbjct: 1800 TMAAAVAAANHLGPPRDAFPLDPPD--MTEAELEAEDLSDMTPGACLLKFLAFYSRAFDPLSYGISVGRGRLGSPFPLDLPVDAATGLRAAAA-LTIEDPLDMQRNDPSATIRNVSHSCFRFPEVQWLFSQCLAELEVRGPEKLRRNPDTNLLQDLCQY 1955
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12770.1742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G847_ECTSI4.750e-6477.40NTP_transf_2 domain-containing protein n=2 Tax=Ect... [more]
A0A835Z4K4_9STRA8.050e-2644.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12770contigH-paniculata_contig12770:2041..4311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue9.5e-58
Seed eggNOG ortholog2880.D7G847
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons3
Model size997
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12770.1742.1prot_H-paniculata_contig12770.1742.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12770 2444..4284 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.7645583-UTR-H-paniculata_contig12770:2040..24431622928998.7645583-UTR-H-paniculata_contig12770:2040..2443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12770 2041..2443 -
1691480696.246545-UTR-H-paniculata_contig12770:2040..24431691480696.246545-UTR-H-paniculata_contig12770:2040..2443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12770 2041..2443 -
1622928998.8702404-UTR-H-paniculata_contig12770:4284..43111622928998.8702404-UTR-H-paniculata_contig12770:4284..4311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12770 4285..4311 -
1691480696.285721-UTR-H-paniculata_contig12770:4284..43111691480696.285721-UTR-H-paniculata_contig12770:4284..4311Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12770 4285..4311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.8177178-CDS-H-paniculata_contig12770:2443..25511622928998.8177178-CDS-H-paniculata_contig12770:2443..2551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12770 2444..2551 -
1691480696.2624705-CDS-H-paniculata_contig12770:2443..25511691480696.2624705-CDS-H-paniculata_contig12770:2443..2551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12770 2444..2551 -
1622928998.8351433-CDS-H-paniculata_contig12770:3326..35581622928998.8351433-CDS-H-paniculata_contig12770:3326..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12770 3327..3558 -
1691480696.2704906-CDS-H-paniculata_contig12770:3326..35581691480696.2704906-CDS-H-paniculata_contig12770:3326..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12770 3327..3558 -
1622928998.8550167-CDS-H-paniculata_contig12770:4057..42841622928998.8550167-CDS-H-paniculata_contig12770:4057..4284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12770 4058..4284 -
1691480696.2782414-CDS-H-paniculata_contig12770:4057..42841691480696.2782414-CDS-H-paniculata_contig12770:4057..4284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12770 4058..4284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12770.1742.1

>prot_H-paniculata_contig12770.1742.1 ID=prot_H-paniculata_contig12770.1742.1|Name=mRNA_H-paniculata_contig12770.1742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MVVSCTAGVQEALRVVGRAGFGPHLQQQQQQQQVLQVTQAMGPPAQHSIG
ISADLFHMKHMEIALSQEEVERADLSGMTPGEVLVRFLEFFGRQFDPSRL
GISVGRGALNNPFPLAPAVDPRTGMPVMDAHVVIEDPLKMDQNVSRSCFA
FREVQCLFANCLSVLQLRGAEMAESDPDADLLQMLLYY*
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mRNA from alignment at H-paniculata_contig12770:2041..4311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12770.1742.1 ID=mRNA_H-paniculata_contig12770.1742.1|Name=mRNA_H-paniculata_contig12770.1742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2271bp|location=Sequence derived from alignment at H-paniculata_contig12770:2041..4311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAGCACGCCAGCGACCAGGAATGCTATGGTGGTGTCTTGTACTGCGGG
TGTACAAGAGGCTTTACGTGTGGTGGGTCGGGCGGGTTTCGGTCCACACT
TGCAGCAGCAGCAGCAGCAGCAGCAAGTGTTGCAGGTGACCCAAGCGATG
GGTCCCCCGGCGCAGCACAGCATCGGCATCAGCGCGGACTTGTTCCACAT
GAAGCATATGGAGATCGCGCTGTCCCAAGAGGAAGTGGAGCGTGCGGACT
TGAGGTAAGCCTTTATTTATCTGTTTATTTGTCTCCCCCCCCCCCCCCCT
ATCGTGTTTTTCATATGAACGGTGAGGTTTTGATTTTTCACAGGGAACGG
ACCGCAAATGTACGTTGGACAATATTTTGACGAGATGACTGCGCGGAGAT
GGTTCCATGCACATAATTCACGAGGCTCTGGAAAATAGCGAGTCCAGCGA
GCCTTTGGGTGTGTAGATCTTGGGTTGATATATGGACGGTTACGGTAGCA
AAACACTGGAGGACGACTCCACGGCCGTAACGTAGCCGCGTTTAATTCAA
ATTCATAAGTAACGCTCGACAAACTTGAGCCAACGTAGTAGCTGAGGCCT
GTAAGTATTTGTGGTGAATAATGTGGATAGCCAGCTTTATGTCCTAGCTG
GAGGCCAATTTTATCTCTCATCCCCTTGTCCCCTCCCCCCCTCCCCCCTC
CGGTCTTCGTCCGGCCTGCGCTCTCTTGTCCACGTTGCGTCTTGATGCGG
CAGTGGGATGACACCCGGAGAAGTGCTGGTCAGATTCTTGGAATTCTTCG
GCCGCCAGTTCGACCCCAGTCGCCTGGGCATAAGCGTAGGCCGTGGTGCA
CTCAACAATCCTTTTCCCCTCGCCCCCGCCGTGGACCCTCGCACGGGAAT
GCCAGTGATGGACGCCCACGTTGTAATCGAGGACCCGCTCAAAATGGATC
AGAATGTCTCGAGGAGTTGCTTCGCGTTCCGTGAGGTACAAGGAAGATGG
CTGTTTTTGAGTGGAGAAATGTCCTGGGGGGGGGGTTACAGATGGCGGTG
TGGCGAGCAGATAGACGACCGTGCTGAATAGGCATAAAGCTTGAGCTAAG
CTGCCGTTGAAAATGAAGATTATGTTGGGCTATTTTGAAATTAGAATCGG
GGGATATATGTGGGGTGATCGTTCGCTCCACGTCAGGAAGAGAAAAAGTT
GATTCTAAACTGTCAAGTCATTTTAACGCAACGAACGGCGGATCAGATTG
TGAGTTGGTCACTTTGCTGTTGGAGCTCAGCTGGAGTGCTGCGGTGGCTG
TAGCGGACTCAAGAACTTGTACAGCTGAGGTTTCGCTAGACGAAGGAGAG
GCACATATCCATGCAAGGCAAACTGGCCAACGTAGCATGGACAGGGTGGA
GATGGAGCTGGAGGTCTAGCTGTAAAAGGAAACAAACGACAAATTCATGA
CAACCCTAGTGTATGCGACCCCCGTATCCTTACCCTTTCAGTATTTAGTG
TTCGGAGAGTCAATCGCATTTCCGTGTTGAGCACATTTGGTGTTGAGCCC
AAACTGAAGTCTGCTGCAAATGTAGTTTCGATCATCGTCTGTAGGTTATT
TGTTCTGTCAACAGCACACTCCATGGTACTTGATTTATTAGCAGTTTATT
CAAAGATGCAGAGTGTAACCCTGCCCGACGTAATCCCCCCCCCCCCCCCC
CTGTCAACTCGTCTCCTCGTATCATTTTGACTTCTGTACCCACGCTTAAC
ACACGCACAGGTCCAGTGTCTATTCGCCAACTGCCTGTCTGTGCTTCAGC
TCCGAGGTGCCGAGATGGCAGAGTCTGACCCCGACGCAGACCTGCTCCAA
ATGCTCCTCTACTACTAGGCCGACGGCGTGCGGGCCTTGTAGCTCTCTCT
ATCGATCGTTGCGTTGATTACAATCAAATGGCGACGTTCAAAAGCTGTCA
AGGAGCAAGCGCTGTGATAGTTGATCCCCGTGCACCCACCCGCCCATCCT
TTGTGTTCGTCGAGTGTCGTCTAGGCAACCAGGTATAGGAAGTATAGTGG
TGTCTTTGAAGTGTTTTGTTGTGGTTTTTTTCCAATATTCTCCAGAAAGA
AGAGATATTCCAGCCCTCAAAATGTTGACAATTCGCTCGAAGAGCGGCAC
GCAAAATATAGAGCTATAGGGCTCGGCAAGCGTACGCCAGATTTTTGGAG
TGCTTTATCCCCCCTAGGGTCGTCACTTGGAATACCAGTAGGTAGTTCAA
AAGCTTGAAGATGCTGAACAT
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Coding sequence (CDS) from alignment at H-paniculata_contig12770:2041..4311-

>mRNA_H-paniculata_contig12770.1742.1 ID=mRNA_H-paniculata_contig12770.1742.1|Name=mRNA_H-paniculata_contig12770.1742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig12770:2041..4311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGTCTTGTACTGCGGGTGTACAAGAGGCTTTACGTGTGGTGGG
TCGGGCGGGTTTCGGTCCACACTTGCAGCAGCAGCAGCAGCAGCAGCAAG
TGTTGCAGGTGACCCAAGCGATGGGTCCCCCGGCGCAGCACAGCATCGGC
ATCAGCGCGGACTTGTTCCACATGAAGCATATGGAGATCGCGCTGTCCCA
AGAGGAAGTGGAGCGTGCGGACTTGAGATGGTGGTGTCTTGTACTGCGGG
TGTACAAGAGGCTTTACGTGTGGTGGGTCGGGCGGGTTTCGGTCCACACT
TGCAGCAGCAGCAGCAGCAGCAGCAAGTGTTGCAGGTGACCCAAGCGATG
GGTCCCCCGGCGCAGCACAGCATCGGCATCAGCGCGGACTTGTTCCACAT
GAAGCATATGGAGATCGCGCTGTCCCAAGAGGAAGTGGAGCGTGCGGACT
TGAGTGGGATGACACCCGGAGAAGTGCTGGTCAGATTCTTGGAATTCTTC
GGCCGCCAGTTCGACCCCAGTCGCCTGGGCATAAGCGTAGGCCGTGGTGC
ACTCAACAATCCTTTTCCCCTCGCCCCCGCCGTGGACCCTCGCACGGGAA
TGCCAGTGATGGACGCCCACGTTGTAATCGAGGACCCGCTCAAAATGGAT
CAGAATGTCTCGAGGAGTTGCTTCGCGTTCCGTGAGTGGGATGACACCCG
GAGAAGTGCTGGTCAGATTCTTGGAATTCTTCGGCCGCCAGTTCGACCCC
AGTCGCCTGGGCATAAGCGTAGGCCGTGGTGCACTCAACAATCCTTTTCC
CCTCGCCCCCGCCGTGGACCCTCGCACGGGAATGCCAGTGATGGACGCCC
ACGTTGTAATCGAGGACCCGCTCAAAATGGATCAGAATGTCTCGAGGAGT
TGCTTCGCGTTCCGTGAGGTCCAGTGTCTATTCGCCAACTGCCTGTCTGT
GCTTCAGCTCCGAGGTGCCGAGATGGCAGAGTCTGACCCCGACGCAGACC
TGCTCCAAATGCTCCTCTACTACTAGGTCCAGTGTCTATTCGCCAACTGC
CTGTCTGTGCTTCAGCTCCGAGGTGCCGAGATGGCAGAGTCTGACCCCGA
CGCAGACCTGCTCCAAATGCTCCTCTACTACTAG
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