mRNA_H-paniculata_contig12654.1660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12654.1660.1
Unique NamemRNA_H-paniculata_contig12654.1660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: D8LJB4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB4_ECTSI)

HSP 1 Score: 462 bits (1188), Expect = 5.630e-157
Identity = 222/263 (84.41%), Postives = 237/263 (90.11%), Query Frame = 1 
Query:   22 VERVPGLYWALLNSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFRDLCEGRGACGMMEEAGRRFETSSPMPVQLLLLRDQWMEGGDE 810
            +ERVPGLY ALL SADAMDAND+TGVRGPKQSCFVDIEKDLQRTLGMTDV+ +RNVLRCTSTFVPDVGYVQGMNFVCR +LQV+ DEEEAFWVFVGMLQRF LR LYCPGMPLLRLRFFQLNRLLMWHLP LYDHFEACGV  +L+ATSWFVTLLSDGGMLPD EVKV+WD IFLH+SSPASQW+ +FL LLELLRRA   LK+ESRFSELIQRLVNMPFR+LC G GAC  +EE  RRFETSSPMPVQLLLL DQW EGG E
Sbjct:  418 IERVPGLYSALLMSADAMDANDMTGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLRFFQLNRLLMWHLPELYDHFEACGVQTNLYATSWFVTLLSDGGMLPDSEVKVVWDHIFLHSSSPASQWAPMFLFLLELLRRASPALKEESRFSELIQRLVNMPFRELCRGSGACSTIEEGRRRFETSSPMPVQLLLLNDQWTEGGGE 680
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A6H5JIN0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN0_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 1.260e-154
Identity = 223/263 (84.79%), Postives = 237/263 (90.11%), Query Frame = 1 
Query:   22 VERVPGLYWALLNSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFRDLCEGRGACGMMEEAGRRFETSSPMPVQLLLLRDQWMEGGDE 810
            +ERVPGLY ALL SADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDV+ +RNVLRCTSTFVPDVGYVQGMNFVCR +LQV+ DEEEAFWVFVGMLQRF LR LYCPGMPLLRLRFFQLNRLLMWHLP LYDHFEACGV  +L+ATSWFVTLLSDGGMLPD EVKV+WD IFLH+SSPASQW+ +FL LLELLRRA   LK+ESRFSELIQRLVNMPFR+LC G GAC  +EE  RRFETSSPMPVQLLLL DQW EGG E
Sbjct:  648 IERVPGLYSALLMSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLRFFQLNRLLMWHLPELYDHFEACGVQTNLYATSWFVTLLSDGGMLPDSEVKVVWDHIFLHSSSPASQWAPMFLFLLELLRRASPALKEESRFSELIQRLVNMPFRELCRGSGACSTIEEGRRRFETSSPMPVQLLLLHDQWTEGGGE 910
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A835ZLD6_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLD6_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.030e-88
Identity = 141/260 (54.23%), Postives = 177/260 (68.08%), Query Frame = 1 
Query:   22 VERVPGLYWALLNSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVTAMRNVLRCTSTFVPD-VGYVQGMNFVCRCLLQVYH-DEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFRDLC-EGRGACGMMEEAGRRFETSSPMPVQLLLLRDQW 792
            VERVPGLY AL  SA A  A D+ G RG    C  DIEKD+ RT    +  A+R VL   S F+P  +GYVQG N V R LL V   D+E+ FW +VGM+ +F L  LY PGMP LRLRFFQLNRL++WHLP L+ HF  C V ADL+AT WF+TLL+DG MLP+++ +V+WDRIF+   +PA QWS I+ VLLELLRRAE  L   +RF +LIQ L ++P +DL   G GA  ++E A   FE S P+P QLL++ D+W
Sbjct:  232 VERVPGLYEALFASAQATSAADMAGGRGAMSQCVTDIEKDISRTANFENRMALRGVLYSLSAFLPGGIGYVQGQNLVARFLLIVMREDQEDTFWAWVGMMHQFDLLGLYTPGMPRLRLRFFQLNRLVLWHLPRLHAHFATCDVAADLYATPWFITLLADGSMLPEQQTRVIWDRIFMQCGAPAEQWSCIYGVLLELLRRAEPMLLGLARFDDLIQMLTHLPIKDLLFPGEGAVALLERAASAFEASVPLPCQLLMIEDEW 491
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A7S1UJ21_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ21_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.310e-42
Identity = 95/267 (35.58%), Postives = 147/267 (55.06%), Query Frame = 1 
Query:   28 RVPGLYWALLNSADA---------MDANDITGVRGPKQSCFVDIEKDLQRTL--GMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYH-DEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFRDLCEGRGACGMMEEAGRRFETSSPMPVQLLLLRDQW 792
            RVPGLY ALL++ +A          +   + GV     + + +I+ D+ RT+  G      +R++LR T+ F P +GY QG+N+V + +L     D+E AFW+    L RF + +LY PGM  + L +FQL +L+  HLPGL  H +   VT DL++TSWFVTLL+D  +LP   V  +WD +F++  +P+ QW  IF V+L  L  +EG L K S F   +  L ++PF  + +       + +   ++E       QL LL  ++
Sbjct:  374 RVPGLYEALLSTIEAEVMGAIKSDFEETKMGGVYA--STVWTEIDTDVCRTVETGTAMARRLRDILRATAAFFPSLGYCQGLNYVGKFILTCCGGDDEGAFWLMAAALTRFEITKLYEPGMTRVHLCYFQLEKLVQLHLPGLAKHLKMFDVTPDLYSTSWFVTLLTDNALLPGAGVGQVWDALFVYDGAPSEQWGLIFRVILWALSLSEGELLKLSTFEHCLSFLHHLPFDGMWDSIDDFSTLMDPHPQWEAHRSFAEQLTLLHAEF 638
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A7S4DB79_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB79_HETAK)

HSP 1 Score: 126 bits (316), Expect = 4.620e-32
Identity = 69/181 (38.12%), Postives = 97/181 (53.59%), Query Frame = 1 
Query:  283 EEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLH--ASSPASQWSSIFLVLLELLRRAEGTLKK--ESRFSELIQRLVNMPFRDLC-EGRGACGMMEEAGRRFETSSPMPVQLLLLRDQWMEGGDE 810
            E++FW    +L    +  LY  GMP L LRFFQL RL  WHLP L D   +  + A+L+AT WFVTLL+D  + P+ EV  +WD  F+   A  P ++W+  F  LL  LR     L +     F   +  L  +PFRD+C + RG  G+  +A   +E  + M  QL LL  +W+   D+
Sbjct:   18 EDSFWALSALLSPTDMTGLYREGMPGLHLRFFQLERLQQWHLPELADRLRSLQIPANLYATGWFVTLLTDASLFPEPEVTKLWDAFFIRWAAGGPRARWALHFRALLGALRALWPRLARLPAGDFDAALALLHRVPFRDICKDSRGVLGLAADAFELYERETKMEDQLALLELEWVRQQDD 198
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A7S2PZU8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PZU8_9DINO)

HSP 1 Score: 111 bits (277), Expect = 7.530e-26
Identity = 75/204 (36.76%), Postives = 105/204 (51.47%), Query Frame = 1 
Query:  100 RGPKQSCFVDIEKDLQRTLGM----TDVTAMR-----NVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFR 684
            R  +  C  +I KD+ RT        D T +      NVLR  S F P+VGY QGM F+C  LL +Y  EE+AF + + +L  + + +L+ PG+PLL   FFQL RLL  H+P L +H    GV   ++A+ WF+T+       P   V  +WD IFL     A     IF + L LL   +  L  ES F ++++ L   P R
Sbjct:   13 RTEEAPCEAEIVKDINRTFPKHVLYRDKTGLGQQQLLNVLRAYSVFNPEVGYCQGMGFICGVLL-MYMCEEDAFLMLISLLDNYRMSKLFMPGLPLLNKYFFQLQRLLAMHMPSLCNHLAQQGVEPTMYASKWFMTVCIYN--FPFSTVVRIWD-IFL-----AEGVKIIFRIALALLMMNQEALLNES-FEQILETLKQAPSR 206
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BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A813HJZ4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HJZ4_POLGL)

HSP 1 Score: 108 bits (270), Expect = 4.210e-24
Identity = 73/199 (36.68%), Postives = 103/199 (51.76%), Query Frame = 1 
Query:  118 CFVDIEKDLQRT------------LGMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMP 678
            C  DI +D+ RT            LG   +    NVLR  S F P+VGY QGM F+C  LL +Y  E++AF + + +L+ + +  L+ P +PLL   FFQL RLL  H+P LY+H    GV   ++A+ WF+T+       P   V  +WD IFL     A     IF + L LL+  +  L  ES F +++Q L   P
Sbjct:  104 CEGDIVRDINRTFPKHVLFRDKQGLGQQQLL---NVLRAYSVFNPEVGYCQGMGFICGVLL-MYMCEDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEMHMPQLYNHLAEQGVEPTMYASQWFMTVCIYN--FPFATVVRVWD-IFL-----AEGVKIIFRIALALLKLNQEALLNES-FEQILQTLKQAP 289
[Close]
BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A7S2JBH9_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2JBH9_9DINO)

HSP 1 Score: 103 bits (257), Expect = 2.240e-23
Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 1 
Query:  184 NVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFR 684
            NVLR  S F  +VGY QGM F+C  LL +Y  E++AF + + +L+ + +  L+ P +PLL   FFQL RLL  H+P LY H    GV   ++A+ WF+T+       P   V  +WD IFL     A     IF + L LL+  +  L  +S F +++Q L   P R
Sbjct:    6 NVLRAYSVFNAEVGYCQGMGFICGVLL-MYMGEDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEMHMPLLYSHLAQQGVEPTMYASEWFMTVCIYN--FPFSTVVRVWD-IFL-----AEGVKIIFRIALALLKLNQEALLSQS-FEQILQTLKQAPSR 162
[Close]
BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A812TBV2_9DINO (EVI5 protein n=6 Tax=Symbiodinium TaxID=2949 RepID=A0A812TBV2_9DINO)

HSP 1 Score: 103 bits (258), Expect = 2.210e-22
Identity = 72/205 (35.12%), Postives = 103/205 (50.24%), Query Frame = 1 
Query:  100 RGPKQSCFVDIEKDLQRT------------LGMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMP 678
            R     C  DI +D+ RT            LG   +    NVLR  S F  +VGY QGM F+C  LL +Y  E++AF + + +L+ + +  L+ P +PLL   FFQL RLL  +LP LY+H    GV   ++A+ WF+T+       P   V  +WD IFL     A     IF + L LL+  +  L  +S F +++Q L   P
Sbjct:   99 RAEAAPCEGDIVRDINRTFPKHVLYRDKQGLGQQQLL---NVLRAYSVFNAEVGYCQGMGFICGVLL-MYMGEDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEMNLPQLYEHLAEQGVEPTMYASQWFMTVCIYN--FPFSTVVRVWD-IFL-----AEGVKIIFRIALALLKLNQDALLHQS-FEQILQTLKQAP 290
[Close]
BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Match: A0A7S1ALD3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALD3_NOCSC)

HSP 1 Score: 104 bits (259), Expect = 2.240e-22
Identity = 73/201 (36.32%), Postives = 103/201 (51.24%), Query Frame = 1 
Query:  118 CFVDIEKDLQRT------------LGMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWVFVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTADLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLELLRRAEGTLKKESRFSELIQRLVNMPFR 684
            C  DI +D+ RT            LG   + +   VLR  S F P+VGY QGM FVC  LL +Y  E++AF + + +L+ + +  L+ P +PLL   FFQL RLL  H+P L+ H    GV   ++A+ WF+T+       P   V  +WD IFL     A     IF + L LL+  +  L  ES F +++Q L   P R
Sbjct:  128 CEGDIVRDINRTFPKHVLYRDKAGLGQQQLLS---VLRAYSVFNPEVGYCQGMGFVCGVLL-MYMREDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEIHMPLLFSHLGQQGVEPTMYASQWFMTVCIYN--FPFSTVVRVWD-IFL-----AEGVKIIFRIALALLKLNQDALINES-FEQILQTLKQAPSR 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12654.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJB4_ECTSI5.630e-15784.41Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JIN0_9PHAE1.260e-15484.79Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZLD6_9STRA1.030e-8854.23Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A7S1UJ21_9STRA2.310e-4235.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4DB79_HETAK4.620e-3238.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2PZU8_9DINO7.530e-2636.76Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A813HJZ4_POLGL4.210e-2436.68Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2JBH9_9DINO2.240e-2338.32Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A812TBV2_9DINO2.210e-2235.12EVI5 protein n=6 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S1ALD3_NOCSC2.240e-2236.32Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12654contigH-paniculata_contig12654:697..6959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score463.0
Seed ortholog evalue9.6e-128
Seed eggNOG ortholog2880.D8LJB4
Preferred nameFASTKD3
KEGG koko:K19944
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons6
Model size810
Cds size810
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12654.1660.1prot_H-paniculata_contig12654.1660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12654 697..6959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.7109816-CDS-H-paniculata_contig12654:696..7721622928987.7109816-CDS-H-paniculata_contig12654:696..772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 697..772 -
1691480692.0197613-CDS-H-paniculata_contig12654:696..7721691480692.0197613-CDS-H-paniculata_contig12654:696..772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 697..772 -
1622928987.7261767-CDS-H-paniculata_contig12654:1756..19741622928987.7261767-CDS-H-paniculata_contig12654:1756..1974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 1757..1974 -
1691480692.0314171-CDS-H-paniculata_contig12654:1756..19741691480692.0314171-CDS-H-paniculata_contig12654:1756..1974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 1757..1974 -
1622928987.7419262-CDS-H-paniculata_contig12654:3144..32891622928987.7419262-CDS-H-paniculata_contig12654:3144..3289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 3145..3289 -
1691480692.0385716-CDS-H-paniculata_contig12654:3144..32891691480692.0385716-CDS-H-paniculata_contig12654:3144..3289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 3145..3289 -
1622928987.7622647-CDS-H-paniculata_contig12654:3857..39941622928987.7622647-CDS-H-paniculata_contig12654:3857..3994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 3858..3994 -
1691480692.0459433-CDS-H-paniculata_contig12654:3857..39941691480692.0459433-CDS-H-paniculata_contig12654:3857..3994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 3858..3994 -
1622928987.7741842-CDS-H-paniculata_contig12654:5746..58421622928987.7741842-CDS-H-paniculata_contig12654:5746..5842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 5747..5842 -
1691480692.0557592-CDS-H-paniculata_contig12654:5746..58421691480692.0557592-CDS-H-paniculata_contig12654:5746..5842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 5747..5842 -
1622928987.7870767-CDS-H-paniculata_contig12654:6821..69591622928987.7870767-CDS-H-paniculata_contig12654:6821..6959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 6822..6959 -
1691480692.063228-CDS-H-paniculata_contig12654:6821..69591691480692.063228-CDS-H-paniculata_contig12654:6821..6959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12654 6822..6959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12654.1660.1

>prot_H-paniculata_contig12654.1660.1 ID=prot_H-paniculata_contig12654.1660.1|Name=mRNA_H-paniculata_contig12654.1660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
MHFRFPAVERVPGLYWALLNSADAMDANDITGVRGPKQSCFVDIEKDLQR
TLGMTDVTAMRNVLRCTSTFVPDVGYVQGMNFVCRCLLQVYHDEEEAFWV
FVGMLQRFGLRRLYCPGMPLLRLRFFQLNRLLMWHLPGLYDHFEACGVTA
DLFATSWFVTLLSDGGMLPDREVKVMWDRIFLHASSPASQWSSIFLVLLE
LLRRAEGTLKKESRFSELIQRLVNMPFRDLCEGRGACGMMEEAGRRFETS
SPMPVQLLLLRDQWMEGGDE
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mRNA from alignment at H-paniculata_contig12654:697..6959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12654.1660.1 ID=mRNA_H-paniculata_contig12654.1660.1|Name=mRNA_H-paniculata_contig12654.1660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6263bp|location=Sequence derived from alignment at H-paniculata_contig12654:697..6959- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTTCAGGTTTCCGGCGGTCGAGAGAGTTCCAGGGCTGTACTGGGC
GTTGCTGAATAGTGCGGATGCCATGGATGCTAACGATATTACGGGCGTGA
GAGGGCCGAAGCAAAGCTGCTTTGTGGACATCGAGAAGGTATAGTTGGGT
CAACTTTATTTACACTCGTTCGTTTTTCATATATATATATTTAACCCCCG
AAAGGTTGAGGCAAAAACCTTTACCGATGCTTCTATATTGGAGTATTTTA
CCAAAGTATTTCTACATTTCCTTTTATAGAACAGACTTAGTTGTTCCTCT
GCGGAGTAGACGTCACCCTGGTTCGGCCGAACCAAGTAGGCAGTGTGGGG
GTTGCACCCACTGAAAGGGCTCTGACTAGACTTCCAGTCATGCTCAGTTC
ACGAGCTACCCTACCCGTTCGGGCGTAGCTCCGTGTGTGTGTGTGTGTGT
GTGTGTGTTTTTTCCCTGCTTTCGCGAAGCAGCCTTCGTTACATATTTGA
CCTCCCCCCTCGTAGGATGACTCTATGTAGTATGTGTATGTGTAAGTATT
TATTCGGTGTTTATGGTTGGTTGCTGCTGTAGGTTGATGAGTCGAAAACG
AGAACATCCATATCCCGTGATCTGATCGATTTCTTCGTGGCCTGTGTGGA
GACTAGAGGACAGGACTCTCTCTCTCTCTGTATTTACATTATTGTGGATG
TGTTGAAATAAAACAGGTGCGTTAGTTAGTTGGTTGATGCAGTACACATG
GAATTTCCGCAACACGTAAAGTGAGAAGAGCATTTTTTGTTTGTTTGTCG
ACGTGATGCTGTTCGTTCGTTTGTTTGTTTGTGTGTTGTGTTCGTCTTTT
TATTTTGCCCACGCTCCAAAAGTGGTTGGTGTGCCCGTGTGCTCATAGCG
TACCAATGGCGATCTTAGAGTCTCCATCAGACGTGTAGGGCGCACCCCGC
AGCCCTATGTATCCGCTGCCACTGCCCCCTGGAGCGAGTCCCTGTCTCAA
CCGGTTTTGGTTTTGTTCTGTTGTTTTTGTTAGTATTTTTGATACTATTG
TTGAGGATATTAATATATATATATATATATATATATATATCCATTCTGTT
GTTTTTCGACGTGACAGGATTTACAACGAACTCTGGGCATGACGGATGTG
ACAGCCATGCGAAACGTCTTGCGCTGCACTTCCACCTTCGTGCCCGACGT
GGGATACGTTCAGGTGAAGGAAAAGGGGATACTATTGAAGAACCCCGTTT
AACGAGTTCGAGAGAGTTCGAGTTCTGTTGCGGGCTTTGTTAGGTATCCA
CCAAGGTGAACCGATTGATCGATTCGGACGGAGAGGCTTGGTTCTGTTTT
CCAGGGCTCACGGTGGTAGGTTGATTTCAGGAGGGGGGATGAAGAATCAA
CCGCCGGAGAGGACCCAACGAATTGCAGCCTCTATTGGTAAATCTACCAG
AACATGGTTAGATCTTCTCCCCGGAAATTGATACAGTCGGATTTAGAAGG
AAACAAAAATCCGCTTCCAGAAGATACAACGTCTTTTTCCATAGTTTGTG
TTCGTGCTATGTTTTTTACGCATTTTGTACTTTTTTTTTTTTTTTTTCTA
TTTCATCCTGTGTGATGACCCTGTGTTGAAAAAAAAGGAGGAGAGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGAGGGCAAATACCTTTTTTTTCTTTCG
TGGTGTTTTTTGCTCTAGTCCGCCCCTTCATATGAACATGGATTATTAAT
GGTGTTGGGAGAAATGATGGTGTTATACACGGGTTTTCCGTTTATACCCC
GTGAAAACCACGGACCTACGCCCGAACGGGTAGGGTGGGGTAGCTCGTGA
ACTGAGCATGACTGGAAGTCTATCTAGTCAGAGGTCTTTTAGTGGGTGCA
ACCAGCGCCCACATTGCCTGCTTGGTTCGGCCGAACCGGGGTGGCGCCTA
CCTCGCAGAGGAATGAATAACTAGGAAATGCAGACACTCAGAAATCTTCC
GAAGAGTGGAAGCAGCGGCATGGGTTTTTGCCTAACCTTCCGGGGGTTAA
AAAAAAAAGAAAAGGAACGAATAACTCTGTTCTGTTGAAGGAAATGTAGA
AATACTTCGGTATGGAAGCATGGGGATAGAGTTTTTTGCCTTAGCCTTCC
GGGGGTTAAACCCCCCCCCCCAAAAAAAAAAAAAACTCGTGAAAACGAAT
AAATATGTGTGTATCCAGGAGAAATAACGATAGTTAGAGATAGTTGCGAA
TGCTCCATTTGTATTTTTCCAGAGGTTGAAAGGTTATGTGGTTGATTGTT
CATGTCAGACACTGATTCGCAGTTCATATCTTATCATGTCCACGCACTCT
AGATCACCCCCGTTTCGATTTTTTTTATTTTTTTATGGATGTATATAAAG
ACTAATGTGGCATCATGTGCGGTGGGTTACGTATCGGTTTATTTGTCTTG
ATTTTTATATGCTTCCCCCAACTGGTCTAATTTTGCCGATGTAAGCAAGT
CTATACGAGTGAATTCCGAGGTCTACTATGGTGTTATTTTCTTGTGTGAA
CATTGGAGCTATAGTTCTTTTACCGACTGTGGCCAATTGGATGGATGTAC
AGATGAGAACTACTGAATCAACCCCCTGGGTGATTTTTTTTTTTTGGGGG
GGGGGTGTATCGGTTGCTTATACGGAAAAATGTTTCATGTTTACTTAGAG
TACACAAGCGAGTGATTGATACGGTGATATTCCCTTGTGCAGGTTGCTGT
AGCCCATGTCGTGCTTGGCCGAAAAGGCGCGAGAACTTCTGGTACTCCCC
CCCGCCCCCCGCCCCCCGCTTCCCCCTGTCATCTATGGTACTCATCGCGT
TTATCGCCCCTCCTTTTATGGCTCCGAACCCACCAGCGTTAGCCCTATAA
AACGGAACCCAGCCCGCTAACCTTAGCTCGTCCATCGGGGTACGTGTTGT
CGCCGTTTTGTGCAGGGCATGAACTTCGTGTGCAGGTGCCTGCTGCAGGT
GTATCATGACGAGGAAGAGGCGTTCTGGGTATTCGTGGGCATGCTGCAGA
GATTCGGTCTGCGCAGGCTGTACTGCCCCGGCATGCCGCTTTTGCGCCTT
AGGTGAGGGGCGGCGATGATGAAGAGTGGGCATGTATGTAGTAGTATGGT
GGTGGGCTTTGGTTTGTGGGTTTGTTGTGTAAAGCTAGCTGGTGTTGGTA
TTTGCTTCACGTGTGTGTGTGTGTGTGTGTATACTATGGTACGGGTGTAG
AGCAGTTTTACGACGGAGTTGTCGGTAGGGCTAAAAGAGTGCAGGTTCAT
TGGCTGTTTGTCTACGACAAGTGTCAACGGATTGCCCGATTAGTATTTTG
TGTTGTGCCGATCCATGGCGATGTTCCAGCCCGAAACCCACCCAAGCGAC
AACAACAGTAGTCCTTGCTCGAGGCGACAGCAAAAAAAACGCAAGTTTTT
TTTGTTTTTTTTTTCGTATCCTCGCAGGGCTCTGTTCTCCCCAAGAACTC
GTGGTCAATGGTCTGGCAACTACGGTAGGCAAAATTTGAGTACGATCGTC
CATTAGTGATTTTGTTTTGCCAGATGAGCGCATACAACCAAAGATTGAAG
TTGGCTGCCATATTCATCCTCCCTCCTCGTTTCTTTGTCGTCGTTGCATG
TCAACTGACTCGTGTGGAAGGTTCTTCCAGCTTAACCGATTGCTCATGTG
GCACCTGCCCGGGTTATACGATCATTTTGAGGCGTGTGGTGTAACGGCCG
ATCTATTCGCCACGAGCTGGTTTGTCACGCTCTTGTCGGATGGAGGCATG
CTTCCTGATCGCGAGGTGATGCTTGGGAAGTCGCACTGAAATTTGAAATT
TGAAATCTGAAAATTCTGGGTTCGTCCGCTTTTTTTCTTTTTTTTGTCTG
GCCGTGCAGCAGAAACAAAGCTGAAAAAAAATGGAATTGGAATATAGGTG
TAAATGAAAAAATTGCGTGGTCTCTCGATCCTCATGGCCCATGTATGCCT
GGCTGTAGTCGTGCTGCGCTCAGTCCGGTTCAACGCTGCCTTTGGCAGGC
CTGAAGCGTATTATGCCTGGTTGAAACCGGGGGGGGGGAAATGCGGATGA
ATTTTTCTTAGTTGAGGGAAGGTCTTCGAAGGTTGGGAAGGATATGTCCA
CATACTACACGATTGTGGAGGTGTCAAGTAAAAGAAAATTCTGTTGAAAA
GGAACAAGGGTATCGGAACGCACCCGGACATTTTTTCAGGGAGGAAGAGG
ATATCATGTTGCCGTCATCACCCTCCTCACTTCCCTCTCCCACCCCCCCA
CCCCCCCTCTCCGCCCTCTCGAGAATAGGTGGTCAATGTTCTAACAGCTC
AAACGTGGACATGTGGAGCTAGTGCTGTTAAGCTGTTGACGGCAGTCAGA
ATAGGCTACAATGCTTTTTAAGCGCGTTCAAAAGAACGAACCCCGGGTAA
TTCTGTTTCAGCATCCTCTGCACTGATTTTGTCGTCCTCATTTTCTGGTA
TAATAAACTAAACACGTTGATTCTTGACCCAGGGTTGCTTGCATACAATG
TTGGATATGGGGGGCTACGGGACAGTACGGTAATGTCCTGGGCGAAGGCA
CGGGGGGAACTAGGGGGCGAAGGGTAGTCATGTTTTCTTCATGTACGCCG
TTGTTATTAGACTTTGGGGGATCGAGTGTTGTTCCCATTACCCAAGCAAT
CTTGACTCACTGATCGCTCTTTCCTACGTTGCCAAACGTGTCTCGAATAA
CCTGTACCTATTTCTATCTGCAGCACCTCAGCCAGACGCGAGCGCGCTGA
CGGGGGCGAGGGGGGATGGTTGGAAAAGATAAGGGTCCCTCTGAGAGGGG
AATTTTCCGTATCTAACACTCCCCCCCCCCCCCACCCCCCCGCCGTTGAT
CACTAACCAACTGATTTTTTTAAGATATCACCCCCCACGCCGATCCTACC
TTCCCCCCCCCAAAAAACCTGAAAACACACCACAGGTGAAGGTTATGTGG
GACCGTATATTCCTTCATGCGTCCAGCCCTGCGTCTCAATGGTCGTCTAT
CTTCCTCGTGCTGCTGGAGCTCCTGAGGAGGGCGGAGGGCACTCTGAAGA
AGGAGTCGAGATTCAGTGAGCTCATCCAGAGGCTTGTCAACATGCCCTTC
CGGGACTTGTGCGAGGGACGCGGGGCCTGTGGCATGATGGAAGAGGCTGG
CAGGTTCGTTCGCGCACGTGTGTGGTGTGTGTGTGTCGTGTGTCGTGTGT
GTGTGCTATTTGTGTGCGTGTTTTGTGTTCCGCGTGTAGGGATGTTTCAT
GCTGTATATGTTTTTGTCAAGTGTGTGTCAATGTATATATACAATGGTTA
GGGTGACTGTGAGTGAGGGAGGAAGAGCTTGCGTGGTGGGCCACAACTCA
AAGCATCACAACTTCTATTTTTGGTCTGCTTTTCTCCCACCATGAACGTT
TTTACCACTGCCGTACATATCCACTTTGAGGTTGGTGGCTCTTTTCATGA
CGGGTGAAACGCTCGTACACTAGCCTAGGCGGACTTAAAGGGGTCCCTTC
CCTTGACTGTATCTTTTTGTCAGACTGTCGCTGCTGTAGCAACGGCCACT
GAGGATGCTTTCGTCCAAGGCAAAAATCGCTATTATTACACACATTATTC
TGGTTTGCTTCCTTTTAATATTTACGATATTCGTACATTTGTCACCATGT
GTTATATTTTTGCCACACACAAAATGGCATGCTCTGCCGTAACGGTAAGA
GAGTCAATTTCCATAACCCGCCTTGCGTTGCAGGATTGAGAGTGTTCCGA
CACCGTGTGCACATGATTTAACCCCGATGTAACCGGATTCTGAAAAAAGA
CAACAAAGAAACCTGACAGTCCCGCGACCAAACCATCACGAAAGTGGGGG
AGGGGGGGGGGTGCAGAACAAATATGGAGAGTATGACTATCTCACGGCCC
CGAGCCCTTAACCTTACCTTCTCCGAAGCGTTGTGGTTATCTTCGAAGCT
ACGTGCAAGGCACCATTTTAAGGCAGAGATTGGGTCGAGATTTGTTTTTT
TTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTTCCGCTGCTTCCACATA
TTGGGTCGGGATTGTACAGCCTCCATCCAGTGTCACAGGGATTTACAACG
TTGATTTTGTTGCTCTGGTGCAATGGTTCCCGATCAGGCGATTCGAGACG
TCATCACCGATGCCGGTGCAGCTGCTTCTTCTTCGAGACCAATGGATGGA
GGGCGGAGACGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12654:697..6959-

>mRNA_H-paniculata_contig12654.1660.1 ID=mRNA_H-paniculata_contig12654.1660.1|Name=mRNA_H-paniculata_contig12654.1660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig12654:697..6959- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTTCAGGTTTCCGGCGGTCGAGAGAGTTCCAGGGCTGTACTGGGC
GTTGCTGAATAGTGCGGATGCCATGGATGCTAACGATATTACGGGCGTGA
GAGGGCCGAAGCAAAGCTGCTTTGTGGACATCGAGAAGATGCATTTCAGG
TTTCCGGCGGTCGAGAGAGTTCCAGGGCTGTACTGGGCGTTGCTGAATAG
TGCGGATGCCATGGATGCTAACGATATTACGGGCGTGAGAGGGCCGAAGC
AAAGCTGCTTTGTGGACATCGAGAAGGATTTACAACGAACTCTGGGCATG
ACGGATGTGACAGCCATGCGAAACGTCTTGCGCTGCACTTCCACCTTCGT
GCCCGACGTGGGATACGTTCAGGATTTACAACGAACTCTGGGCATGACGG
ATGTGACAGCCATGCGAAACGTCTTGCGCTGCACTTCCACCTTCGTGCCC
GACGTGGGATACGTTCAGGGCATGAACTTCGTGTGCAGGTGCCTGCTGCA
GGTGTATCATGACGAGGAAGAGGCGTTCTGGGTATTCGTGGGCATGCTGC
AGAGATTCGGTCTGCGCAGGCTGTACTGCCCCGGCATGCCGCTTTTGCGC
CTTAGGGCATGAACTTCGTGTGCAGGTGCCTGCTGCAGGTGTATCATGAC
GAGGAAGAGGCGTTCTGGGTATTCGTGGGCATGCTGCAGAGATTCGGTCT
GCGCAGGCTGTACTGCCCCGGCATGCCGCTTTTGCGCCTTAGGTTCTTCC
AGCTTAACCGATTGCTCATGTGGCACCTGCCCGGGTTATACGATCATTTT
GAGGCGTGTGGTGTAACGGCCGATCTATTCGCCACGAGCTGGTTTGTCAC
GCTCTTGTCGGATGGAGGCATGCTTCCTGATCGCGAGGTTCTTCCAGCTT
AACCGATTGCTCATGTGGCACCTGCCCGGGTTATACGATCATTTTGAGGC
GTGTGGTGTAACGGCCGATCTATTCGCCACGAGCTGGTTTGTCACGCTCT
TGTCGGATGGAGGCATGCTTCCTGATCGCGAGGTGAAGGTTATGTGGGAC
CGTATATTCCTTCATGCGTCCAGCCCTGCGTCTCAATGGTCGTCTATCTT
CCTCGTGCTGCTGGAGCTCCTGAGGAGGGCGGAGGGCACTCTGAAGAAGG
AGTCGAGATTCAGTGAGCTCATCCAGAGGCTTGTCAACATGCCCTTCCGG
GACTTGTGCGAGGGACGCGGGGCCTGTGGCATGATGGAAGAGGCTGGCAG
GTGAAGGTTATGTGGGACCGTATATTCCTTCATGCGTCCAGCCCTGCGTC
TCAATGGTCGTCTATCTTCCTCGTGCTGCTGGAGCTCCTGAGGAGGGCGG
AGGGCACTCTGAAGAAGGAGTCGAGATTCAGTGAGCTCATCCAGAGGCTT
GTCAACATGCCCTTCCGGGACTTGTGCGAGGGACGCGGGGCCTGTGGCAT
GATGGAAGAGGCTGGCAGGCGATTCGAGACGTCATCACCGATGCCGGTGC
AGCTGCTTCTTCTTCGAGACCAATGGATGGAGGGCGGAGACGAAGCGATT
CGAGACGTCATCACCGATGCCGGTGCAGCTGCTTCTTCTTCGAGACCAAT
GGATGGAGGGCGGAGACGAA
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