mRNA_H-paniculata_contig12550.1604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.170e-49 Identity = 115/334 (34.43%), Postives = 167/334 (50.00%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 G G+KS ++++ ++A+YGLKQ+G W + L LNK + GCA RD+ G +RI+Q +ID+++ RF V++ S +PAS ++GP+R+DE P+R A+GS++W+S ++PDI+ A GL L+VYVDA YA + RRSVS +A +GG+V+S S TQ V+LS++EAEY+A +G K AL RAVL F+ P+ SG + + EDNQGAMA +NP S+ RSKHI+VRYHFI+ Sbjct: 133 GCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIR 465
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.290e-49 Identity = 92/194 (47.42%), Postives = 136/194 (70.10%), Query Frame = 3 Query: 480 GCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANAGLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 GCA RD G +RI+ +ID+++KRF V++ S +PAS +LGP+R+D + P++ A+GS++W+S ++PD++ A + L+VYVDA YA + +RSVS A +G +VVS S TQ ++LS++EAEY+A +G K ALL RAVL F P+ SG + + EDNQGA+A +NP S+GR+KHINVR+H I+ Sbjct: 106 GCAIERDFEAGTLRISHAAYIDSMVKRFDVQSASRIPASPGVDLGPKRDDMKGGEWPVKEAIGSMMWVSTFSRPDVSLA-VRLAVYVDASYADTED-KRSVSGFATTVGKTVVSHGSKTQSNLSLSSTEAEYIAAGEGVKEALLVRAVLSFAAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHINVRFHLIR 297
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 187 bits (474), Expect = 5.800e-49 Identity = 114/335 (34.03%), Postives = 164/335 (48.96%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVLLNK-------------------------------------------------------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQE 1064 G G +G+++++++A+YGLKQ+G W +L++ Y GCA RD+ G ++Q+ +I ++ RFG+ T + PA A+LGP+R+DE +KP+R A+G L+W + T+PDIA A GL+L VYVDA YA R RRSV+ +A +GG+VVS S TQ V+LSTSEAEY+A +G K AL RAVL F+ P+ SG K+ + EDNQGA++ +NP S+ RSKHI+VR+HFI+E Sbjct: 1422 GSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 1756
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 186 bits (473), Expect = 7.230e-49 Identity = 114/335 (34.03%), Postives = 163/335 (48.66%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVLLNK-------------------------------------------------------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQE 1064 G G +G+++++++A+YGLKQ+G W +L++ Y GCA RD+ G ++Q+ +I ++ RFG+ T + PA A LGP+R+DE +KP+R A+G L+W + T+PDIA A GL+L VYVDA YA R RRSV+ +A +GG+VVS S TQ V+LSTSEAEY+A +G K AL RAVL F+ P+ SG K+ + EDNQGA++ +NP S+ RSKHI+VR+HFI+E Sbjct: 869 GSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 1203
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 186 bits (472), Expect = 9.820e-49 Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 G GDKS +I + ++A+YGLKQ+G W + L LNK + GCA RD+ G +RI+Q +ID++++RF V++ S +PA+ A+LGP+REDEE P+R A+GS++W+S ++PD++ A GL L+VYVDA YA + RRSVS +A +GG+VVS S TQ V+LS++EAEY+A +G K AL RAVL F+ P+ SG + + EDNQGA+A +NP S+GR+KHI+VRYHFI+ Sbjct: 870 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1202
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.050e-48 Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 G GDKS +I + ++A+YGLKQ+G W + L LNK + GCA RD+ G +RI+Q +ID++++RF V++ S +PA+ A+LGP+REDEE P+R A+GS++W+S ++PD++ A GL L+VYVDA YA + RRSVS +A +GG+VVS S TQ V+LS++EAEY+A +G K AL RAVL F+ P+ SG + + EDNQGA+A +NP S+GR+KHI+VRYHFI+ Sbjct: 1249 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1581
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.060e-48 Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 G GDKS +I + ++A+YGLKQ+G W + L LNK + GCA RD+ G +RI+Q +ID++++RF V++ S +PA+ A+LGP+REDEE P+R A+GS++W+S ++PD++ A GL L+VYVDA YA + RRSVS +A +GG+VVS S TQ V+LS++EAEY+A +G K AL RAVL F+ P+ SG + + EDNQGA+A +NP S+GR+KHI+VRYHFI+ Sbjct: 1269 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1601
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.070e-48 Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 G GDKS +I + ++A+YGLKQ+G W + L LNK + GCA RD+ G +RI+Q +ID++++RF V++ S +PA+ A+LGP+REDEE P+R A+GS++W+S ++PD++ A GL L+VYVDA YA + RRSVS +A +GG+VVS S TQ V+LS++EAEY+A +G K AL RAVL F+ P+ SG + + EDNQGA+A +NP S+GR+KHI+VRYHFI+ Sbjct: 1412 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1744
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE) HSP 1 Score: 170 bits (431), Expect = 2.410e-46 Identity = 104/284 (36.62%), Postives = 159/284 (55.99%), Query Frame = 3 Query: 363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVLLN------KYLGCAFWRDMVRGVVRITQRTFIDTV-----IKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 G GDKS +I++ ++A+YGLKQ+G W + L+ K C F R MV VV + ++D + ++RF V++ S +PA+ A+LGP+R++E+ P+R A+GS++W+S ++PD++ A GL L+VYVDA YA + RRSVS +A +GG+VVS S Q V+L ++EAEY+A +G K AL RAVL F+ P+ SG + + EDN A+A +NP S+GR+KHI+ R+HF++ Sbjct: 37 GCGDKSHKIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVF-RKMVDEVVVMIIVIYVDDILVAGMVRRFDVQSTSHIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNHEAIALVQNPLSSGRTKHIDARFHFMR 318
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 175 bits (443), Expect = 2.460e-45 Identity = 99/234 (42.31%), Postives = 140/234 (59.83%), Query Frame = 3 Query: 480 GCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061 GCA RD+ G +RI+Q +ID+++ RF V++ S +PA+ A+LGP+REDEE P+R A+GS++W+S ++PD++ A GL L+VYVDA YA + RRSVS +A +GG+VVS S TQ V+LS+ EAEY+A +G K AL RAVL F+ P+ G + + EDNQGAMA +NP S+GR+ HI+VR+HFI+ Sbjct: 481 GCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIR 713 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12550.1604.1 >prot_H-paniculata_contig12550.1604.1 ID=prot_H-paniculata_contig12550.1604.1|Name=mRNA_H-paniculata_contig12550.1604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp MYGLKQAGWMWSKRLVEVLLNKYLGCAFWRDMVRGVVRITQRTFIDTVIKback to top mRNA from alignment at H-paniculata_contig12550:3071..4436- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12550.1604.1 ID=mRNA_H-paniculata_contig12550.1604.1|Name=mRNA_H-paniculata_contig12550.1604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1366bp|location=Sequence derived from alignment at H-paniculata_contig12550:3071..4436- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12550:3071..4436- >mRNA_H-paniculata_contig12550.1604.1 ID=mRNA_H-paniculata_contig12550.1604.1|Name=mRNA_H-paniculata_contig12550.1604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig12550:3071..4436- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |