mRNA_H-paniculata_contig12550.1604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12550.1604.1
Unique NamemRNA_H-paniculata_contig12550.1604.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.170e-49
Identity = 115/334 (34.43%), Postives = 167/334 (50.00%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            G G+KS ++++ ++A+YGLKQ+G  W     + L                                                 LNK            + GCA  RD+  G +RI+Q  +ID+++ RF V++ S +PAS   ++GP+R+DE     P+R A+GS++W+S  ++PDI+ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+V+S  S TQ  V+LS++EAEY+A  +G K AL  RAVL F+ P+ SG  + + EDNQGAMA  +NP S+ RSKHI+VRYHFI+
Sbjct:  133 GCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIR 465          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.290e-49
Identity = 92/194 (47.42%), Postives = 136/194 (70.10%), Query Frame = 3
Query:  480 GCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANAGLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            GCA  RD   G +RI+   +ID+++KRF V++ S +PAS   +LGP+R+D +    P++ A+GS++W+S  ++PD++ A + L+VYVDA YA   + +RSVS  A  +G +VVS  S TQ  ++LS++EAEY+A  +G K ALL RAVL F  P+ SG  + + EDNQGA+A  +NP S+GR+KHINVR+H I+
Sbjct:  106 GCAIERDFEAGTLRISHAAYIDSMVKRFDVQSASRIPASPGVDLGPKRDDMKGGEWPVKEAIGSMMWVSTFSRPDVSLA-VRLAVYVDASYADTED-KRSVSGFATTVGKTVVSHGSKTQSNLSLSSTEAEYIAAGEGVKEALLVRAVLSFAAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHINVRFHLIR 297          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 5.800e-49
Identity = 114/335 (34.03%), Postives = 164/335 (48.96%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVLLNK-------------------------------------------------------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQE 1064
            G G  +G+++++++A+YGLKQ+G  W      +L++                                                              Y GCA  RD+  G   ++Q+ +I  ++ RFG+ T +  PA   A+LGP+R+DE   +KP+R A+G L+W +  T+PDIA A                                        GL+L VYVDA YA R   RRSV+ +A  +GG+VVS  S TQ  V+LSTSEAEY+A  +G K AL  RAVL F+ P+ SG K+ + EDNQGA++  +NP S+ RSKHI+VR+HFI+E
Sbjct: 1422 GSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 1756          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 7.230e-49
Identity = 114/335 (34.03%), Postives = 163/335 (48.66%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVLLNK-------------------------------------------------------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQE 1064
            G G  +G+++++++A+YGLKQ+G  W      +L++                                                              Y GCA  RD+  G   ++Q+ +I  ++ RFG+ T +  PA   A LGP+R+DE   +KP+R A+G L+W +  T+PDIA A                                        GL+L VYVDA YA R   RRSV+ +A  +GG+VVS  S TQ  V+LSTSEAEY+A  +G K AL  RAVL F+ P+ SG K+ + EDNQGA++  +NP S+ RSKHI+VR+HFI+E
Sbjct:  869 GSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRE 1203          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 9.820e-49
Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            G GDKS +I + ++A+YGLKQ+G  W     + L                                                 LNK            + GCA  RD+  G +RI+Q  +ID++++RF V++ S +PA+  A+LGP+REDEE    P+R A+GS++W+S  ++PD++ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K AL  RAVL F+ P+ SG  + + EDNQGA+A  +NP S+GR+KHI+VRYHFI+
Sbjct:  870 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1202          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.050e-48
Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            G GDKS +I + ++A+YGLKQ+G  W     + L                                                 LNK            + GCA  RD+  G +RI+Q  +ID++++RF V++ S +PA+  A+LGP+REDEE    P+R A+GS++W+S  ++PD++ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K AL  RAVL F+ P+ SG  + + EDNQGA+A  +NP S+GR+KHI+VRYHFI+
Sbjct: 1249 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1581          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.060e-48
Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            G GDKS +I + ++A+YGLKQ+G  W     + L                                                 LNK            + GCA  RD+  G +RI+Q  +ID++++RF V++ S +PA+  A+LGP+REDEE    P+R A+GS++W+S  ++PD++ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K AL  RAVL F+ P+ SG  + + EDNQGA+A  +NP S+GR+KHI+VRYHFI+
Sbjct: 1269 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1601          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.070e-48
Identity = 119/334 (35.63%), Postives = 170/334 (50.90%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVL-------------------------------------------------LNK------------YLGCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            G GDKS +I + ++A+YGLKQ+G  W     + L                                                 LNK            + GCA  RD+  G +RI+Q  +ID++++RF V++ S +PA+  A+LGP+REDEE    P+R A+GS++W+S  ++PD++ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K AL  RAVL F+ P+ SG  + + EDNQGA+A  +NP S+GR+KHI+VRYHFI+
Sbjct: 1412 GCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1744          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.410e-46
Identity = 104/284 (36.62%), Postives = 159/284 (55.99%), Query Frame = 3
Query:  363 GFGDKSGRIIRLDKAMYGLKQAGWMWSKRLVEVLLN------KYLGCAFWRDMVRGVVRITQRTFIDTV-----IKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            G GDKS +I++ ++A+YGLKQ+G  W     + L+       K   C F R MV  VV +    ++D +     ++RF V++ S +PA+  A+LGP+R++E+    P+R A+GS++W+S  ++PD++ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+VVS  S  Q  V+L ++EAEY+A  +G K AL  RAVL F+ P+ SG  + + EDN  A+A  +NP S+GR+KHI+ R+HF++
Sbjct:   37 GCGDKSHKIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVF-RKMVDEVVVMIIVIYVDDILVAGMVRRFDVQSTSHIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNHEAIALVQNPLSSGRTKHIDARFHFMR 318          
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.460e-45
Identity = 99/234 (42.31%), Postives = 140/234 (59.83%), Query Frame = 3
Query:  480 GCAFWRDMVRGVVRITQRTFIDTVIKRFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDIANA----------------------------------------GLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLSTSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKNPTSTGRSKHINVRYHFIQ 1061
            GCA  RD+  G +RI+Q  +ID+++ RF V++ S +PA+  A+LGP+REDEE    P+R A+GS++W+S  ++PD++ A                                        GL L+VYVDA YA   + RRSVS +A  +GG+VVS  S TQ  V+LS+ EAEY+A  +G K AL  RAVL F+ P+  G  + + EDNQGAMA  +NP S+GR+ HI+VR+HFI+
Sbjct:  481 GCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIR 713          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12550.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE1.170e-4934.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L663_9PHAE1.290e-4947.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L175_9PHAE5.800e-4934.03Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE7.230e-4934.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE9.820e-4935.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.050e-4835.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.060e-4835.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.070e-4835.63Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KLY3_9PHAE2.410e-4636.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE2.460e-4542.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12550contigH-paniculata_contig12550:3071..4436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue2.6e-22
Seed eggNOG ortholog164328.Phyra87566
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1064
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12550.1604.1prot_H-paniculata_contig12550.1604.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12550 3071..4029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.5785713-CDS-H-paniculata_contig12550:3070..34191622928979.5785713-CDS-H-paniculata_contig12550:3070..3419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12550 3071..3419 -
1691480688.5856566-CDS-H-paniculata_contig12550:3070..34191691480688.5856566-CDS-H-paniculata_contig12550:3070..3419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12550 3071..3419 -
1622928979.591747-CDS-H-paniculata_contig12550:3538..37801622928979.591747-CDS-H-paniculata_contig12550:3538..3780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12550 3539..3780 -
1691480688.5968468-CDS-H-paniculata_contig12550:3538..37801691480688.5968468-CDS-H-paniculata_contig12550:3538..3780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12550 3539..3780 -
1622928979.606254-CDS-H-paniculata_contig12550:3963..40291622928979.606254-CDS-H-paniculata_contig12550:3963..4029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12550 3964..4029 -
1691480688.6067207-CDS-H-paniculata_contig12550:3963..40291691480688.6067207-CDS-H-paniculata_contig12550:3963..4029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12550 3964..4029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.6928813-UTR-H-paniculata_contig12550:4029..44361622928979.6928813-UTR-H-paniculata_contig12550:4029..4436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12550 4030..4436 -
1691480688.614865-UTR-H-paniculata_contig12550:4029..44361691480688.614865-UTR-H-paniculata_contig12550:4029..4436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12550 4030..4436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12550.1604.1

>prot_H-paniculata_contig12550.1604.1 ID=prot_H-paniculata_contig12550.1604.1|Name=mRNA_H-paniculata_contig12550.1604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MYGLKQAGWMWSKRLVEVLLNKYLGCAFWRDMVRGVVRITQRTFIDTVIK
RFGVETESDLPASQQANLGPRREDEELSNKPMRSAVGSLIWLSGMTKPDI
ANAGLNLSVYVDADYAHRSNWRRSVSVVAEMLGGSVVSDTSTTQHYVTLS
TSEAEYVAMAQGAKTALLTRAVLEFLQPQLSGRKVMMFEDNQGAMATSKN
PTSTGRSKHINVRYHFIQE
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mRNA from alignment at H-paniculata_contig12550:3071..4436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12550.1604.1 ID=mRNA_H-paniculata_contig12550.1604.1|Name=mRNA_H-paniculata_contig12550.1604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1366bp|location=Sequence derived from alignment at H-paniculata_contig12550:3071..4436- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAAAGAGTTGTGGAATAAGGCAGTCAGAGTAGAGTTTGAAGGCTTGGA GAGTCTCAAAGCTTGTAATTATGTTGATTTGCGAAAGGCTTCCAATGTGG TCAGTGCTAGGTGGATATTTGCATGGAAAATTGATGAGCAGGGGAATATG ACAAAGCCAAAGGCAAGGCTCGTAGCTCGAGGGTTTAGCCAGCAATATAA CGTTGATCTTCTCGAGGTGTTTTCTCCTACAGTAGCCACCTCCAGTGTCA AGATGGTGATTGCTGTTACTGTTGAAAACGACTGGAGACTGTGGCAAGTA GAGGTGAAACAGGCTTTTCTTCAGACGATCTTAGATTTCGAGGTGTTCAT GAATCTTCCAGAGGGTTCGGGGACAAAAGCGGTAGAATAATAAGGCTGGA TAAGGCCATGTATGGTCTCAAGCAGGCTGGATGGATGTGGTCAAAGCGCC TCGTAGAAGTACTCCTGAATAAAGTCGGCATGGCGTAATCCAAGTCTGAC CCTTGCGTGTTCAGCCTGGAGAAACGTGGAGTGGTAGATATGATTATGTG TGTTCATGTAGATGATATGATTGTTTCTGGTAAAAGTGTGGAGTGTGATT TTCTGTTTGCAGCGTTAAGGGCGGACTTCCAAACCACGCGAGGCGAGCTG AAGTAGTACCTAGGTTGCGCATTTTGGCGTGACATGGTAAGGGGAGTTGT CCGCATCACACAGCGGACATTCATTGATACTGTCATTAAACGTTTTGGCG TCGAAACCGAGTCTGACCTTCCTGCGTCTCAGCAGGCAAATCTTGGTCCT AGGAGGGAAGATGAGGAGTTGTCTAACAAGCCTATGCGCTCGGCTGTGGG GAGTTTGATATGGTTAAGTGGTATGACGAAACCTGATATAGCCAATGCGT TACGGGTAGTAGGGAGGCAAGCCCACAATCCTACGGACAGGCACTGTAAA GCAGCGGTGAAAATAATCTCGTACCTCAGAGAACAAAAGACTTGCGGTCA GTGTTCGAAAGGGGTAGTGGGCTTAATCTGTCAGTGTATGTAGACGCAGA TTATGCACACAGGTCCAACTGGAGGCGTTCGGTGTCAGTCGTGGCAGAAA TGTTAGGGGGGAGTGTAGTGAGCGATACCAGCACAACACAACACTACGTG ACGCTTTCCACTAGTGAGGCAGAGTATGTAGCTATGGCGCAAGGCGCTAA GACAGCACTTCTCACAAGAGCCGTGCTAGAGTTCTTGCAGCCACAGCTTT CTGGTAGGAAGGTTATGATGTTTGAAGACAACCAGGGGGCAATGGCTACG TCTAAGAATCCCACTAGTACGGGCAGGAGCAAGCACATAAATGTAAGATA TCATTTCATTCAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12550:3071..4436-

>mRNA_H-paniculata_contig12550.1604.1 ID=mRNA_H-paniculata_contig12550.1604.1|Name=mRNA_H-paniculata_contig12550.1604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig12550:3071..4436- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGTCTCAAGCAGGCTGGATGGATGTGGTCAAAGCGCCTCGTAGA
AGTACTCCTGAATAAAATGTATGGTCTCAAGCAGGCTGGATGGATGTGGT
CAAAGCGCCTCGTAGAAGTACTCCTGAATAAATACCTAGGTTGCGCATTT
TGGCGTGACATGGTAAGGGGAGTTGTCCGCATCACACAGCGGACATTCAT
TGATACTGTCATTAAACGTTTTGGCGTCGAAACCGAGTCTGACCTTCCTG
CGTCTCAGCAGGCAAATCTTGGTCCTAGGAGGGAAGATGAGGAGTTGTCT
AACAAGCCTATGCGCTCGGCTGTGGGGAGTTTGATATGGTTAAGTGGTAT
GACGAAACCTGATATAGCCAATGCTACCTAGGTTGCGCATTTTGGCGTGA
CATGGTAAGGGGAGTTGTCCGCATCACACAGCGGACATTCATTGATACTG
TCATTAAACGTTTTGGCGTCGAAACCGAGTCTGACCTTCCTGCGTCTCAG
CAGGCAAATCTTGGTCCTAGGAGGGAAGATGAGGAGTTGTCTAACAAGCC
TATGCGCTCGGCTGTGGGGAGTTTGATATGGTTAAGTGGTATGACGAAAC
CTGATATAGCCAATGCTGGGCTTAATCTGTCAGTGTATGTAGACGCAGAT
TATGCACACAGGTCCAACTGGAGGCGTTCGGTGTCAGTCGTGGCAGAAAT
GTTAGGGGGGAGTGTAGTGAGCGATACCAGCACAACACAACACTACGTGA
CGCTTTCCACTAGTGAGGCAGAGTATGTAGCTATGGCGCAAGGCGCTAAG
ACAGCACTTCTCACAAGAGCCGTGCTAGAGTTCTTGCAGCCACAGCTTTC
TGGTAGGAAGGTTATGATGTTTGAAGACAACCAGGGGGCAATGGCTACGT
CTAAGAATCCCACTAGTACGGGCAGGAGCAAGCACATAAATGTAAGATAT
CATTTCATTCAAGAGTGGGCTTAATCTGTCAGTGTATGTAGACGCAGATT
ATGCACACAGGTCCAACTGGAGGCGTTCGGTGTCAGTCGTGGCAGAAATG
TTAGGGGGGAGTGTAGTGAGCGATACCAGCACAACACAACACTACGTGAC
GCTTTCCACTAGTGAGGCAGAGTATGTAGCTATGGCGCAAGGCGCTAAGA
CAGCACTTCTCACAAGAGCCGTGCTAGAGTTCTTGCAGCCACAGCTTTCT
GGTAGGAAGGTTATGATGTTTGAAGACAACCAGGGGGCAATGGCTACGTC
TAAGAATCCCACTAGTACGGGCAGGAGCAAGCACATAAATGTAAGATATC
ATTTCATTCAAGAG
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