mRNA_H-paniculata_contig125.1566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig125.1566.1
Unique NamemRNA_H-paniculata_contig125.1566.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: D8LQH0_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH0_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.840e-34
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFEKGGAY 234
            + D+K+      CLMD+A YVQIGPH INEHASA RAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHF  GGAY
Sbjct:  398 LQDIKIGGEHWHCLMDIAPYVQIGPHCINEHASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFGAGGAY 475
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A836CM41_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM41_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.140e-25
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   10 LKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLP 207
            L + E D  CL+DLAAYVQ+GPH +NEHASA RAY MFRTLGLRHL VVNH+NEV+G+I+RENLLP
Sbjct:  556 LDLSEEDGRCLIDLAAYVQVGPHSMNEHASAHRAYEMFRTLGLRHLTVVNHFNEVVGIISRENLLP 621
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A7R9VRQ8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRQ8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 9.900e-18
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 210
            + D+ +R  D  C +DL  Y    P+ +NE AS QR Y +FRTLGLR L VVNH N+V+G+ITR++LLPE
Sbjct:   30 IDDVDMRPGDRNCWLDLRPYANTAPYTVNETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPE 99
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A7R9ZRT7_9STRA (Chloride channel protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRT7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.540e-17
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 210
            + D+ +RE D  C +DL  Y    P+ +NE AS QR Y +FRTLGLR L VVNH N+V+G+ITR++LLPE
Sbjct:  228 IDDVDMRESDQNCWLDLRPYANTAPYTVNETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPE 297
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A1Z5JAK4_FISSO (Chloride channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 83.2 bits (204), Expect = 8.830e-17
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLP----EHFEKGGAYHSNE 246
            + D+ +RE D  C +DL  Y    P+ INE AS QR Y +FRTLGLR L VVNH N+V+G+ITR++LLP    E   +G   H NE
Sbjct:  772 ISDVHLREQDRNCWLDLRPYANTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPRALSESLLRGRNAHVNE 857
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.060e-16
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 210
            + D+ + E D  C +DL  Y    P+ INE AS QR Y +FRTLGLR L VVNH N+V+G+ITR++LLPE
Sbjct:  705 IDDIDIGEADRNCWLDLRPYANTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPE 774
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A7S4S7C7_9STRA (Chloride channel protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7C7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.070e-16
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 210
            + D+++R  +  C +DL  Y    PH +NE AS QR Y +FRTLGLR L VVNH N+V+G+ITR++LLPE
Sbjct:  786 IDDVEMRPGEENCWLDLRPYANTAPHTVNETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPE 855
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A7S2XUS9_9STRA (Chloride channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.050e-15
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    7 DLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPEHFEK 222
            DL V   + EC +DL  Y    P++I E  S +R Y +FRTLGLRH++V+N++N+V+GMITR++LL +H ++
Sbjct:  529 DLIVTSAERECWIDLRPYTNAAPYIIQESTSVERTYRLFRTLGLRHIIVINNHNQVVGMITRKDLLADHLKE 600
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 79.7 bits (195), Expect = 1.350e-15
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLPE 210
            V  ++VR  D    +DL  Y    P+ +NE AS QR Y +FRTLGLR LVVVNH+N+V+G+ITR++LLPE
Sbjct:  345 VDTIEVRGADRNSWLDLRPYANTAPYTVNETASIQRTYRLFRTLGLRFLVVVNHHNQVVGIITRKDLLPE 414
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BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Match: A0A7S0UJS8_9STRA (Chloride channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.450e-15
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 VHDLKVREHDMECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMGMITRENLLP 207
            + D ++ E D  C +DL  Y    P+ INE AS QR Y +FRTLGLR L VVNH N+V+G+ITR++LLP
Sbjct:  649 IDDFEIGEADRNCWLDLRPYANTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLP 717
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig125.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH0_ECTSI1.840e-3479.49Chloride channel protein n=1 Tax=Ectocarpus silicu... [more]
A0A836CM41_9STRA9.140e-2574.24Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A7R9VRQ8_9STRA9.900e-1852.86Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7R9ZRT7_9STRA2.540e-1754.29Chloride channel protein n=1 Tax=Craspedostauros a... [more]
A0A1Z5JAK4_FISSO8.830e-1750.00Chloride channel protein n=2 Tax=Fistulifera solar... [more]
A0A1E7FXI3_9STRA3.060e-1654.29Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]
A0A7S4S7C7_9STRA3.070e-1652.86Chloride channel protein n=3 Tax=Ditylum brightwel... [more]
A0A7S2XUS9_9STRA1.050e-1547.22Chloride channel protein n=1 Tax=Fibrocapsa japoni... [more]
A0A7S1D5H2_CYCTE1.350e-1554.29Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]
A0A7S0UJS8_9STRA1.450e-1553.62Chloride channel protein n=1 Tax=Pseudo-nitzschia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig125contigH-paniculata_contig125:49872..50829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue6.8e-28
Seed eggNOG ortholog2880.D8LQH0
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.Chloride Channel
EggNOG OGsCOG0038@1,KOG0474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Exons2
Model size249
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig125.1566.1prot_H-paniculata_contig125.1566.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig125 49872..50799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.8275635-CDS-H-paniculata_contig125:49871..500321622928969.8275635-CDS-H-paniculata_contig125:49871..50032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig125 49872..50032 -
1691480686.2312763-CDS-H-paniculata_contig125:49871..500321691480686.2312763-CDS-H-paniculata_contig125:49871..50032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig125 49872..50032 -
1622928969.8429263-CDS-H-paniculata_contig125:50741..507991622928969.8429263-CDS-H-paniculata_contig125:50741..50799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig125 50742..50799 -
1691480686.2422018-CDS-H-paniculata_contig125:50741..507991691480686.2422018-CDS-H-paniculata_contig125:50741..50799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig125 50742..50799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.8601303-UTR-H-paniculata_contig125:50799..508291622928969.8601303-UTR-H-paniculata_contig125:50799..50829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig125 50800..50829 -
1691480686.2507586-UTR-H-paniculata_contig125:50799..508291691480686.2507586-UTR-H-paniculata_contig125:50799..50829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig125 50800..50829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig125.1566.1

>prot_H-paniculata_contig125.1566.1 ID=prot_H-paniculata_contig125.1566.1|Name=mRNA_H-paniculata_contig125.1566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MECLMDLAAYVQIGPHVINEHASAQRAYIMFRTLGLRHLVVVNHYNEVMG
MITRENLLPEHFEKGGAYHSNEG
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mRNA from alignment at H-paniculata_contig125:49872..50829-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig125.1566.1 ID=mRNA_H-paniculata_contig125.1566.1|Name=mRNA_H-paniculata_contig125.1566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at H-paniculata_contig125:49872..50829- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCACGACCTGAAGGTTCGAGAACATGACATGGAATGCCTCATGGACCT
TGCGGCCTACGTACAAATTGGGCCTCACGTCATCAATGGTGAGTGGGCAA
ATCCCAATTGTACGATCACCACTTGATCTCTGCTGTAGAACATATGCTAT
CAAAGATGTCTTGACCGGATATGTTGTACGATACTGCGTAGTCGAAGCGT
ATGAATTGTACATGGTATCGTATTAGAGTCGTGGCGCTCTAGCCGGCTTT
ATAATTCGGGTTGAAGGTATTACCAAGAGGAGAGACTCTATCCAAATATC
TTGTGAAGTTGTTCACCACAATCGACCAGTTCTAGCACAATGTTGCTCCT
CAACCCTAGCACCTTGCTTTGTTGAGGGCACACCTTATCAACAGTCTCCA
AATCTCGCAACGTTCAATCTTCTCTGACGCGTGTCGAAGCAAACATTAGA
CTGTTTGGTATGGCCGCGACAACCCAAAATCGCCCGCTTCAACCCTTGCG
GGACGCAGCCCTCTGAGATCTACCTTCTAAGAACTATTTTTGGCACGTTT
GTCTTGATAAAATATACAATAGGTCATATCACCTTGGGACGCAACCCATC
GTAGATCTGTTTTTGGGTACCCAAATTTGATGAGGGGCACCCCTTTGAGA
AGCTCGAAAAATTGCTGATTTTCAGCGCGAATCGCACGTAAACCGTGAAC
GATGCTTCAAAAAGTACCGGGTCTCGAAGGGGTTAAGGTGTTCACCATAT
GACAGACTAACCACCGACGGGTACCTCCTTCTCTCCTTGTTTCACAGAAC
ATGCGTCTGCACAGCGAGCGTACATCATGTTCCGCACATTGGGTCTCCGC
CACTTGGTTGTGGTAAACCACTACAATGAAGTGATGGGCATGATCACCAG
AGAGAATCTATTGCCCGAACATTTCGAGAAGGGCGGGGCCTACCATAGTA
ACGAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig125:49872..50829-

>mRNA_H-paniculata_contig125.1566.1 ID=mRNA_H-paniculata_contig125.1566.1|Name=mRNA_H-paniculata_contig125.1566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig125:49872..50829- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATGCCTCATGGACCTTGCGGCCTACGTACAAATTGGGCCTCACGT
CATCAATGATGGAATGCCTCATGGACCTTGCGGCCTACGTACAAATTGGG
CCTCACGTCATCAATGAACATGCGTCTGCACAGCGAGCGTACATCATGTT
CCGCACATTGGGTCTCCGCCACTTGGTTGTGGTAAACCACTACAATGAAG
TGATGGGCATGATCACCAGAGAGAATCTATTGCCCGAACATTTCGAGAAG
GGCGGGGCCTACCATAGTAACGAAGGGAACATGCGTCTGCACAGCGAGCG
TACATCATGTTCCGCACATTGGGTCTCCGCCACTTGGTTGTGGTAAACCA
CTACAATGAAGTGATGGGCATGATCACCAGAGAGAATCTATTGCCCGAAC
ATTTCGAGAAGGGCGGGGCCTACCATAGTAACGAAGGG
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