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Homology
BLAST of mRNA_H-paniculata_contig12334.1475.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE) HSP 1 Score: 202 bits (514), Expect = 9.780e-55 Identity = 128/292 (43.84%), Postives = 176/292 (60.27%), Query Frame = 1
Query: 181 VRPLALAGAS-NSSALVNACRIENIVIHDGVPLAAGSAAMTDGSLSTKCAAKLVVVSIAGDKTLLNPSTSTDARLNKLFQSVKDSLHPRGTVAIMVPHPWHLHAGRIHSALTHASVGLHVEDHP-PLQYKGMRSGRTSQNAVNHLRYNAYMVMLAHNDPGDGAGFTCNKRVLVDDVNGNSSGTVRAPLPLMNDIPVESAKTDIPLRCCLFLVNRFFNMGDAVISLGAESHQIMETTLDRARKVKVFVASSDGAQEEVARRAETAFLAAYKEGKFQASSSPANEVLIRHGILP 1050
VRP L G S N + L++ CR EN +HD VPL + + LS + A KLV+VSI ++ LL S +T+ L ++ +V+ +HP GT+A++VPHPW H R+ A+ A VGL VEDHP L Y GR A NHL+ + MV+L HN+ GA FTCNKRV VDD G S + + LM D+ E A TDI +R FL+NR+ + GD V SL AE H ++E L+R+R+V+VFVA+ + +EEV + +F AYK GK++AS+S A E +I LP
Sbjct: 305 VRPSLLGGPSGNEAVLMDKCRDENTTLHDIVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSDASPS-MQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNS-KEEVRKNLLASFSRAYKAGKWKASTSLAQERVISPSCLP 589
BLAST of mRNA_H-paniculata_contig12334.1475.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.460e-12 Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 181 VRPLALAGAS-NSSALVNACRIENIVIHDGVPLAAGSAAMTDGSLSTKCAAKLVVVSIAGDKTLLNPSTSTDARLNKLFQSVKDSLHPRGTVAIMVPHPWHLHAGRIHSALTHAS 522
VRP L G S N + L++ CR EN +HD VPL + + LS + A KLV+VSI ++ LL S +T+ L ++ +V+ +HP GT+A++VPHPW H R+ T S
Sbjct: 363 VRPSLLGGPSGNEAVLMDKCRDENATLHDTVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQGDSTFLS 475
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1067 |
| Cds size | 1008 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12334.1475.1 >prot_H-paniculata_contig12334.1475.1 ID=prot_H-paniculata_contig12334.1475.1|Name=mRNA_H-paniculata_contig12334.1475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
MCSPASATETKKKGKKMKACDSADSSEQPVKKKARKTTSATVRPLALAGA
SNSSALVNACRIENIVIHDGVPLAAGSAAMTDGSLSTKCAAKLVVVSIAG
DKTLLNPSTSTDARLNKLFQSVKDSLHPRGTVAIMVPHPWHLHAGRIHSA
LTHASVGLHVEDHPPLQYKGMRSGRTSQNAVNHLRYNAYMVMLAHNDPGD
GAGFTCNKRVLVDDVNGNSSGTVRAPLPLMNDIPVESAKTDIPLRCCLFL
VNRFFNMGDAVISLGAESHQIMETTLDRARKVKVFVASSDGAQEEVARRA
ETAFLAAYKEGKFQASSSPANEVLIRHGILPDRVQV back to topmRNA from alignment at H-paniculata_contig12334:602..3063- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12334.1475.1 ID=mRNA_H-paniculata_contig12334.1475.1|Name=mRNA_H-paniculata_contig12334.1475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2462bp|location=Sequence derived from alignment at H-paniculata_contig12334:602..3063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGAGGATGCCACTCTGAACTGCAGGGTCTACAGCGAATTTGGTCAC
TTTGAAGATGTGCAGTCCTGCCTCAGCGACCGAGACTAAGAAGAAAGGGA
AGAAGATGAAGGCTTGCGACAGTGCAGACTCCTCTGAGCAACCTGTGAAG
AAGAAAGCCCGGAAGACTACTTCTGCGACCGTTCGTCCTCTTGCTCTTGC
TGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCTTGCAGGTACAGTTTGG
GGACGAATTAATGTCGTTGTGTTGCTTTCTATGGATGGTAGACTTTGTTG
TCATCGCCAGGTAGGTAGCCAGTCTGCCTCTGTTGCTTGCATGTTTTACT
TGTTAGTCTTCCTCATATCAACTTGCATTACACCTGGCGTCAAAGTACAG
GAGCTTCGTTACATATAGACTACATGAGACTGCTTCATGTCTTCTACATG
AATCACTGCATATTTATTCACAACAGTGTGTCCTCCATGGATTTCGCTTC
ACGAGAATGATGATTGGCGTGCACGATCCCTAAACATATACGACGTACCC
CTATTTGTTACCGCTACCAAGGATCGAGAACATTGTTATCCATGATGGGG
TGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGGAGTCTGTCCACC
AAGTGTGCGGCCAAATTGGTGGTTGTCTCCATTGCAGGAGACAAGACCCT
CCTCAACCCTTCCACATCAACCGACGCCCGACTGAACAAGCTATTCCAAT
CCGTGAAAGATAGCCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCT
CATCCTTGGCATCTGCACGCTGGACGCATCCACAGTGAGTATTTTGTCTT
TACTGTTTATGCAACTTCATAAAAAATACGCCATTGCTGTAACATGGAAG
CCCATCGACCGCTTCAGCCCACTATATCCAATGGTTTATGGGAGGAGAAA
GTAGCGTGTACACGGCATAATAGAGTGTGCAACATGATTGCATCAAGGTG
TAATGTGAACGTGCGATTGGGGTATCACTGGACGTCCATTCTACGTTTTT
TCACATGTTGCACGATAAACTCCGCCTGTTGAGGCACATGAACGACCACG
GAGATATTGGAGCACACAGATTGGGTGTAGTCCAAACATCAACACATTCC
GTCGACTTTCTTACTGTGTTTTCAGGTGCTCTGACCCATGCATCGGTAGG
TTTGCACGTTGAGGATCACCCACCTCTCCAGTACAAGGGTATGAGGTCCG
GGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATGCATACATG
GTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTCACGTGCAA
CAAGCGTGTACTGGTGGACGATGTCAACGGCAACAGCAGCGGTACCGTCA
GAGCACCCCTCCCATTGATGAACGATATACCTGTGGAGAGTGCCAAGACG
GATATACCACTCAGGTGTTGCCTGTTCCTCGTTAACAGGTGAAAATAGCG
GTTATTACTTGAGCAGGGTTGTGGTTCATGTTTGCACATTCCTCATTCTA
AGGCTGCATATTTTTCTCTTCTATGTGGTTGTTGTTGGAGCGCTCTACAA
CCATCACGAGCATAATAGTAAGTAACTAGAGAACTGATGTTGGGGCGTCA
TTGTGACCATCTAAACAAAGTCTTGTGTTGACACGCCATACAGACACCAC
CATGAGATACCTGCTATATGACAATGAGGTATACTGGTTAGGCCTTGGTC
ATGTAGTTGGCAAAAATCCCTTTTTTTTGCCAACATATCGTCAGTACTAC
TGATAATGCCTTGTTCTTATTTGGTATGGCAGGTTCTTCAACATGGGAGA
TGCAGTCATATCACTGGGCGCTGAGAGTCATCAAATTATGGAGACGACGC
TTGATCGTGCGAGGAAGGTTAAGGTCTTCGTGGCTTCTTCTGATGGTGCG
CAAGAAGAGGTTGCAAGGCGAGCAGAAACGGCTTTCTTGGCGGCTTACAA
GGAGGGGAAATTCCAGGTCAGTACAGAGTCGGAGATTGTCCAATGTTTGG
TGTGGCGTTGTGTGCGACAGTCATCAACATCTACAAGTAAATGTGTCGCG
CAAGCACTATCATTATCTGCAGTACCAAACAGCTGAGCCAGTTATGAAAA
CTTTGTCAACGCCGATTGACAGAGATGCCTTAGTAGTAGTGGCACCCGAA
GAAAGCCACTTAAGGCTTGGACAATAGAACGTATTAATTAACGGAAGCCG
AATTGTTGAGTTGACATTAATGCGTGTTGAGAAGCTGTTTTGTTCGCGCT
GCCGTTTCTTGACGCAGACACTTTTTATTATGTTGTGTGTAATGCGTACG
TTGACTACTATGTAATATATTCCCCCGTGCTCCCCTTGTCATACAGGCAT
CATCATCCCCGGCCAATGAGGTTCTCATTCGCCATGGTATTCTACCGGAT
AGGGTCCAAGTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig12334:602..3063- >mRNA_H-paniculata_contig12334.1475.1 ID=mRNA_H-paniculata_contig12334.1475.1|Name=mRNA_H-paniculata_contig12334.1475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig12334:602..3063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAGTCCTGCCTCAGCGACCGAGACTAAGAAGAAAGGGAAGAAGAT
GAAGGCTTGCGACAGTGCAGACTCCTCTGAGCAACCTGTGAAGAAGAAAG
CCCGGAAGACTACTTCTGCGACCGTTCGTCCTCTTGCTCTTGCTGGTGCC
AGCAACTCTTCTGCGTTGGTGAACGCTTGCAGATGTGCAGTCCTGCCTCA
GCGACCGAGACTAAGAAGAAAGGGAAGAAGATGAAGGCTTGCGACAGTGC
AGACTCCTCTGAGCAACCTGTGAAGAAGAAAGCCCGGAAGACTACTTCTG
CGACCGTTCGTCCTCTTGCTCTTGCTGGTGCCAGCAACTCTTCTGCGTTG
GTGAACGCTTGCAGGATCGAGAACATTGTTATCCATGATGGGGTGCCTCT
TGCAGCTGGGTCGGCGGCCATGACAGATGGGAGTCTGTCCACCAAGTGTG
CGGCCAAATTGGTGGTTGTCTCCATTGCAGGAGACAAGACCCTCCTCAAC
CCTTCCACATCAACCGACGCCCGACTGAACAAGCTATTCCAATCCGTGAA
AGATAGCCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCATCCTT
GGCATCTGCACGCTGGACGCATCCACAGATCGAGAACATTGTTATCCATG
ATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGGAGTCTG
TCCACCAAGTGTGCGGCCAAATTGGTGGTTGTCTCCATTGCAGGAGACAA
GACCCTCCTCAACCCTTCCACATCAACCGACGCCCGACTGAACAAGCTAT
TCCAATCCGTGAAAGATAGCCTGCACCCCCGTGGGACTGTTGCAATCATG
GTACCTCATCCTTGGCATCTGCACGCTGGACGCATCCACAGTGCTCTGAC
CCATGCATCGGTAGGTTTGCACGTTGAGGATCACCCACCTCTCCAGTACA
AGGGTATGAGGTCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGT
TACAATGCATACATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGC
AGGCTTCACGTGCAACAAGCGTGTACTGGTGGACGATGTCAACGGCAACA
GCAGCGGTACCGTCAGAGCACCCCTCCCATTGATGAACGATATACCTGTG
GAGAGTGCCAAGACGGATATACCACTCAGGTGTTGCCTGTTCCTCGTTAA
CAGGTGCTCTGACCCATGCATCGGTAGGTTTGCACGTTGAGGATCACCCA
CCTCTCCAGTACAAGGGTATGAGGTCCGGGCGCACATCGCAGAATGCTGT
CAATCATCTACGTTACAATGCATACATGGTGATGTTGGCACACAACGACC
CGGGTGACGGGGCAGGCTTCACGTGCAACAAGCGTGTACTGGTGGACGAT
GTCAACGGCAACAGCAGCGGTACCGTCAGAGCACCCCTCCCATTGATGAA
CGATATACCTGTGGAGAGTGCCAAGACGGATATACCACTCAGGTGTTGCC
TGTTCCTCGTTAACAGGTTCTTCAACATGGGAGATGCAGTCATATCACTG
GGCGCTGAGAGTCATCAAATTATGGAGACGACGCTTGATCGTGCGAGGAA
GGTTAAGGTCTTCGTGGCTTCTTCTGATGGTGCGCAAGAAGAGGTTGCAA
GGCGAGCAGAAACGGCTTTCTTGGCGGCTTACAAGGAGGGGAAATTCCAG
GTTCTTCAACATGGGAGATGCAGTCATATCACTGGGCGCTGAGAGTCATC
AAATTATGGAGACGACGCTTGATCGTGCGAGGAAGGTTAAGGTCTTCGTG
GCTTCTTCTGATGGTGCGCAAGAAGAGGTTGCAAGGCGAGCAGAAACGGC
TTTCTTGGCGGCTTACAAGGAGGGGAAATTCCAGGCATCATCATCCCCGG
CCAATGAGGTTCTCATTCGCCATGGTATTCTACCGGATAGGGTCCAAGTT
GCATCATCATCCCCGGCCAATGAGGTTCTCATTCGCCATGGTATTCTACC
GGATAGGGTCCAAGTT back to top
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