mRNA_H-paniculata_contig1232.1466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1232.1466.1
Unique NamemRNA_H-paniculata_contig1232.1466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1232.1466.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 FFLGLVSLAEEKRWFRSAACYVARRAGIPVELKVLAVLQVLGRGHCFDD 150
            FF+ LV+L +++ WF +     + R GIPV+LKVLA LQ+L RG+CF D
Sbjct:  126 FFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFAD 174
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BLAST of mRNA_H-paniculata_contig1232.1466.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.450e-6
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    4 FFLGLVSLAEEKRWFRSAACYVARRAGIPVELKVLAVLQVLGRGHCFDD 150
            FF+ LV L  ++ WF +    V  R  +PVELKVLA LQ+L RG+ F D
Sbjct:  142 FFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFAD 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1232.1466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.740e-751.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.450e-648.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1232contigH-paniculata_contig1232:26987..27547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size150
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.709669-CDS-H-paniculata_contig1232:26986..270341622928953.709669-CDS-H-paniculata_contig1232:26986..27034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1232 26987..27034 -
1691480680.0857327-CDS-H-paniculata_contig1232:26986..270341691480680.0857327-CDS-H-paniculata_contig1232:26986..27034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1232 26987..27034 -
1622928953.7197995-CDS-H-paniculata_contig1232:27445..275471622928953.7197995-CDS-H-paniculata_contig1232:27445..27547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1232 27446..27547 -
1691480680.0964494-CDS-H-paniculata_contig1232:27445..275471691480680.0964494-CDS-H-paniculata_contig1232:27445..27547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1232 27446..27547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1232.1466.1prot_H-paniculata_contig1232.1466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1232 26987..27547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1232.1466.1

>prot_H-paniculata_contig1232.1466.1 ID=prot_H-paniculata_contig1232.1466.1|Name=mRNA_H-paniculata_contig1232.1466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MFFLGLVSLAEEKRWFRSAACYVARRAGIPVELKVLAVLQVLGRGHCFDD
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mRNA from alignment at H-paniculata_contig1232:26987..27547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1232.1466.1 ID=mRNA_H-paniculata_contig1232.1466.1|Name=mRNA_H-paniculata_contig1232.1466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig1232:26987..27547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTTCTCGGCCTGGTGAGCCTAGCAGAGGAGAAGAGGTGGTTCCG
CTCTGCAGCCTGTTACGTCGCAAGACGTGCAGGGATCCCAGTAGAGCTCA
AGGTAGGTCCATGCAGTTAGGGTAGACAACTAACTGTACAATGCTAATAG
GAGTACGGGTTTCGTGATGCTGTTATATGCTCTACGATAAAGCTCTACAC
ACAGTTCGGGGTGGTAAGCTGCGACTACTCCACAAACTGTAGACAGCCTG
TGGCTTTGTCGACTATGGGTAGGATACACCGTAAAAAGTATTTGATGCTC
TACCCTTGCACAGCGCTGCACCACCTTGCGGAGGGACGCGACAGAATTCG
GCAAGTGTAGGAGGGAAGCCAGGGTGCACGGCCTGACTCCTTACGTGTCT
TTCACAATCAAGGTGGAACCATCTGTCATGAAAGGTCATTCGACCCCATG
TGCTCATCGAAGCGAGACCCCACATGTTGTGCGCCCCCCCCCCCCCCCCC
CCCATATTGACAGGTGCTCGCTGTTCTTCAGGTATTGGGTAGGGGACACT
GCTTTGATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1232:26987..27547-

>mRNA_H-paniculata_contig1232.1466.1 ID=mRNA_H-paniculata_contig1232.1466.1|Name=mRNA_H-paniculata_contig1232.1466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig1232:26987..27547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTTCTCGGCCTGGTGAGCCTAGCAGAGGAGAAGAGGTGGTTCCG
CTCTGCAGCCTGTTACGTCGCAAGACGTGCAGGGATCCCAGTAGAGCTCA
AGATGTTCTTTCTCGGCCTGGTGAGCCTAGCAGAGGAGAAGAGGTGGTTC
CGCTCTGCAGCCTGTTACGTCGCAAGACGTGCAGGGATCCCAGTAGAGCT
CAAGGTGCTCGCTGTTCTTCAGGTATTGGGTAGGGGACACTGCTTTGATG
ACGTGCTCGCTGTTCTTCAGGTATTGGGTAGGGGACACTGCTTTGATGAC
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