mRNA_H-paniculata_contig12262.1442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12262.1442.1
Unique NamemRNA_H-paniculata_contig12262.1442.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5JT16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT16_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 7.800e-39
Identity = 68/118 (57.63%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 FMDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
             +D   +N G PHVLVLDGHASHVT +V+K A + NI L+Q+PSHSSH+ QPLDV +FG FKREIT +L+ F  +NG R+P KSD+ GI+ DAW R F+     +SFAGAG++P+D E
Sbjct:   83 LLDRGLIN-GTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVVSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGE 199          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5KP55_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP55_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.190e-38
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = 1
Query:   19 LNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            L DGKPHVLVLDGHASHV++DV+K A+  NIHL QLPSH SHITQPLDV  FG FK+E+  ++  F  +NG  +P K D+AG++  AW   FTP     SFAGAG++P+D+E
Sbjct:  137 LLDGKPHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINKVSFAGAGLWPVDRE 248          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 7.570e-38
Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 MDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            + +  L DGKPHVLVLDGHASHVT+DV+K A+  NIHL QLPSH SHITQPLDV  FG FK+E+  ++  F  +NG  +P K D+AG++  AW   FTP    ASFAGAG++P+D+E
Sbjct:  281 LGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRE 397          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 8.250e-38
Identity = 66/116 (56.90%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 FMDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPID 348
             +D   +N G PHVL LDGHASHVT +V+K A E NI L+Q+PSHSSH+ QPLDV +FG FKREIT +L+ F  +NG R+P KSD+ GI+ DAW R F+     +SF GAG++P+D
Sbjct:   87 LLDRDLIN-GTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFVGAGLWPVD 201          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.270e-37
Identity = 68/118 (57.63%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 FMDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
             +D   +N G PHVLVLDGHASHVT +V+K A + NI L+Q+PSHSSH+ QPLDV +FG FKREIT +L+ F  +NG R+P KSD+ GI+ DAW R F+    ++SFAGAG++P+D E
Sbjct:  267 LLDRGLIN-GTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGE 383          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.460e-37
Identity = 64/112 (57.14%), Postives = 88/112 (78.57%), Query Frame = 1
Query:   19 LNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            L DGKPH+L+LDGHASHV+++V+K AM   I LFQLPSH+SHITQPLDV AFG FK+ +T +L +F + +G  +P+K D+ G++ DAW+  FTP    +SFAGAG++P++KE
Sbjct:  285 LLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASFYRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKE 396          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.820e-37
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 MDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            +D+  + DGKPH LVLD HAS+V+ +V+K AME NI LFQLPSH+SHITQPLDV AFG FK+E+T +L  +   NG  +P+K D+ G++  AW+R FTP    ASF G G++P+D +
Sbjct:   87 LDDRGVLDGKPHTLVLDEHASYVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSFTPERNKASFGGVGLWPVDMD 203          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 9.110e-37
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 MDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            +D+  + DGKPH+LVLDGHASHV+ + +K AM+ NI LF+LPSH+SHITQPLDV AFG FK+E+T +L  +   NG  +P+K D+ G++  AW+   TP    ASF GAG++P+D +
Sbjct:   87 LDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMD 203          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5L0Y6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.610e-36
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   19 LNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            L DGKPHVLVLDGHASHV+ +V++ A   NIHL QLPSH SH+TQPLDV  FG FK+E+   + +F  KNG  +P K D+AG++  AW   FTP    ASFAGAG++P+DK+
Sbjct:  194 LLDGKPHVLVLDGHASHVSFEVIQLAKSLNIHLVQLPSHISHVTQPLDVAGFGCFKKELNTSIASFPSKNGGALPRKRDMAGLIGSAWSTSFTPEINKASFAGAGLWPVDKD 305          
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.050e-36
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 MDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQPLDV*AFGLFKREITNILTTFSQKNGIRMPVKSDIAGIVRDAWERVFTPPNISASFAGAGIFPIDKE 354
            +D+  + DGKPH LVLDGHASHV+ +V+K AME NI LFQLPSH+SHITQPLDV AFG FK+E+T +L  +   NG  +P+K D+ G++  AW+R  T    +ASF GAG+ P+D +
Sbjct:  261 LDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSLTLERNNASFGGAGLRPVDMD 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12262.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT16_9PHAE7.800e-3957.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP55_9PHAE4.190e-3858.93DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYX7_9PHAE7.570e-3858.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K717_9PHAE8.250e-3856.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L5E2_9PHAE2.270e-3757.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA3_9PHAE2.460e-3757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9B8_9PHAE2.820e-3754.70DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KGL1_9PHAE9.110e-3752.99DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L0Y6_9PHAE1.610e-3658.04DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JBS6_9PHAE2.050e-3655.56DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12262contigH-paniculata_contig12262:4111..4464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog2880.D8LN28
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12262.1442.1prot_H-paniculata_contig12262.1442.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12262 4297..4461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.5567026-UTR-H-paniculata_contig12262:4110..42961622928948.5567026-UTR-H-paniculata_contig12262:4110..4296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12262 4111..4296 -
1691480677.9911385-UTR-H-paniculata_contig12262:4110..42961691480677.9911385-UTR-H-paniculata_contig12262:4110..4296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12262 4111..4296 -
1622928948.5825028-UTR-H-paniculata_contig12262:4461..44641622928948.5825028-UTR-H-paniculata_contig12262:4461..4464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12262 4462..4464 -
1691480678.0138097-UTR-H-paniculata_contig12262:4461..44641691480678.0138097-UTR-H-paniculata_contig12262:4461..4464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12262 4462..4464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.5698876-CDS-H-paniculata_contig12262:4296..44611622928948.5698876-CDS-H-paniculata_contig12262:4296..4461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12262 4297..4461 -
1691480678.0036511-CDS-H-paniculata_contig12262:4296..44611691480678.0036511-CDS-H-paniculata_contig12262:4296..4461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12262 4297..4461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12262.1442.1

>prot_H-paniculata_contig12262.1442.1 ID=prot_H-paniculata_contig12262.1442.1|Name=mRNA_H-paniculata_contig12262.1442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MDNSRLNDGKPHVLVLDGHASHVTIDVLKYAMEHNIHLFQLPSHSSHITQ
PLDV*
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mRNA from alignment at H-paniculata_contig12262:4111..4464-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12262.1442.1 ID=mRNA_H-paniculata_contig12262.1442.1|Name=mRNA_H-paniculata_contig12262.1442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig12262:4111..4464- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCATGGACAACAGCCGTCTGAATGACGGCAAGCCCCACGTCCTTGTCCT CGACGGGCACGCTTCGCATGTTACCATCGACGTGTTGAAGTACGCCATGG AGCACAACATCCATCTGTTTCAGCTACCGTCACACTCCTCCCACATCACG CAACCCTTGGACGTGTGAGCGTTCGGTCTCTTCAAGCGCGAGATCACCAA CATCCTCACCACTTTTTCACAGAAAAATGGGATACGGATGCCGGTGAAGA GCGATATAGCCGGGATCGTCCGCGATGCGTGGGAGAGGGTTTTCACGCCG CCGAACATTTCGGCCTCGTTCGCCGGCGCCGGCATCTTCCCCATCGACAA GGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12262:4111..4464-

>mRNA_H-paniculata_contig12262.1442.1 ID=mRNA_H-paniculata_contig12262.1442.1|Name=mRNA_H-paniculata_contig12262.1442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig12262:4111..4464- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAACAGCCGTCTGAATGACGGCAAGCCCCACGTCCTTGTCCTCGA
CGGGCACGCTTCGCATGTTACCATCGACGTGTTGAAGTACGCCATGGAGC
ACAACATCCATCTGTTTCAGCTACCGTCACACTCCTCCCACATCACGCAA
CCCTTGGACGTGTGAATGGACAACAGCCGTCTGAATGACGGCAAGCCCCA
CGTCCTTGTCCTCGACGGGCACGCTTCGCATGTTACCATCGACGTGTTGA
AGTACGCCATGGAGCACAACATCCATCTGTTTCAGCTACCGTCACACTCC
TCCCACATCACGCAACCCTTGGACGTGTGA
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