mRNA_H-paniculata_contig121.1327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig121.1327.1
Unique NamemRNA_H-paniculata_contig121.1327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig121.1327.1 vs. uniprot
Match: A0A6H5KZG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG2_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.780e-36
Identity = 111/252 (44.05%), Postives = 142/252 (56.35%), Query Frame = 1 
Query:    1 GSPEALVGRLYAGRGLQDHLTHSSPPRNTPFGTTSPHRQDPMRENNQDAKKNGSTNNLSSPMGEVSGVLRSHATIPRDALVAFPSHGNTSGLPSKCEQDIMVLRLRQQGHSSSMGLSPSR---SQPSVLPNSPPHIGVRRRTSGESRSEPSFAAGERLEARTSEGAAGXXXXXXXXXXXQANACMTAIGGGMSLSRSLGVLGQSGTAKPLTVAIVNTKDDGAPYLRSERMSPKSVVRRSRALSPVGYSPSRE 747
            GSP+ALVGRLYAG G Q  L  +SPPRNT FGTT+ H Q   RE+  D       +N++SP+  VSG++RS A     A     +  ++  L  + + D +V RL    H SS    P     SQ     NSPP IGVR R SG + ++   +AG R  +  S  AA             A+    ++GGGM LSRSLG LGQ+G  +  T+AIVNT+DDGA YLRSE+MSPKS +R  R LS +  SP RE
Sbjct:   47 GSPDALVGRLYAGPGRQQRLAENSPPRNTSFGTTTVHNQ--YREDVGDVG-----DNVASPVRGVSGLIRSRA-----AAATVATSFDSDSLAEQQQSDALVPRLIH--HQSSEASPPGNGGCSQREDGINSPPRIGVRNRPSGGNATKRMRSAGSRRSSGGSVAAA--RYQPQKQGPSAAHQQQPSVGGGMMLSRSLGALGQAGAGRS-TLAIVNTRDDGASYLRSEKMSPKSSLRAGRGLSSIRSSPGRE 281
[Close]
BLAST of mRNA_H-paniculata_contig121.1327.1 vs. uniprot
Match: D8LK16_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK16_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 9.660e-36
Identity = 115/257 (44.75%), Postives = 146/257 (56.81%), Query Frame = 1 
Query:    1 GSPEALVGRLYAGRGLQDHLTHSSPPRNTPFGTTSPHRQDPMRENNQDAKKNGSTNNLSSPMGEVSGVLRSHATIPRDALVAFPSHGNTSGLPSKCEQDIMVLRL--RQQGHSSSMGLSPSRSQPSVLPNSPPHIGVRRRTSGESRSEPSFAAGERLEARTSEGAAGXXXXXXXXXXXQA-NACMTAIGGGMSLSRSLGVLGQSGTAKPLTVAIVNTKDDGAPYLRSERMSPKSVVRRSRALSPVGYSPSRERYQEG 762
            GSP+ALVGRLYAG G Q  L  +SPPRNT FGTT+ H Q       QD    G  +N++SP+G VSG++RS     R A     +  +   L  + + D +V RL   Q   +S  G +   SQ     NSPP IGVR R+SG + ++    AG R   R+S G+  XX          A      ++GG M LSRSLG LGQ+G A   T+AIVNT+DDGAPYLRS++MSPKS +R  R LS +  SP RE   EG
Sbjct:   47 GSPDALVGRLYAGPGRQQRLAENSPPRNTSFGTTTVHNQ-----YRQDVGDVG--DNVASPVGGVSGLIRS-----RVAAATAATSFDRDSLAEQQQSDALVPRLIHHQPSEASPPG-NDGGSQRGDGINSPPRIGVRNRSSGGNAAKRVRGAGSR---RSSGGSVXXXGNQPQKQGPSAARQQQPSVGGRMMLSRSLGALGQAG-AGTSTLAIVNTRDDGAPYLRSDKMSPKSSLRAGRGLSSIRSSPGREPLSEG 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig121.1327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZG2_9PHAE2.780e-3644.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK16_ECTSI9.660e-3644.75Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig121contigH-paniculata_contig121:183..1267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue9.3e-35
Seed eggNOG ortholog2880.D8LK16
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size793
Cds size792
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5140734-CDS-H-paniculata_contig121:182..9221622928928.5140734-CDS-H-paniculata_contig121:182..922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig121 183..922 +
1691480670.8745177-CDS-H-paniculata_contig121:182..9221691480670.8745177-CDS-H-paniculata_contig121:182..922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig121 183..922 +
1622928928.5289133-CDS-H-paniculata_contig121:1214..12661622928928.5289133-CDS-H-paniculata_contig121:1214..1266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig121 1215..1266 +
1691480670.884456-CDS-H-paniculata_contig121:1214..12661691480670.884456-CDS-H-paniculata_contig121:1214..1266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig121 1215..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig121.1327.1prot_H-paniculata_contig121.1327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig121 183..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig121.1327.1

>prot_H-paniculata_contig121.1327.1 ID=prot_H-paniculata_contig121.1327.1|Name=mRNA_H-paniculata_contig121.1327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
GSPEALVGRLYAGRGLQDHLTHSSPPRNTPFGTTSPHRQDPMRENNQDAK
KNGSTNNLSSPMGEVSGVLRSHATIPRDALVAFPSHGNTSGLPSKCEQDI
MVLRLRQQGHSSSMGLSPSRSQPSVLPNSPPHIGVRRRTSGESRSEPSFA
AGERLEARTSEGAAGGAAGRRASRRAQANACMTAIGGGMSLSRSLGVLGQ
SGTAKPLTVAIVNTKDDGAPYLRSERMSPKSVVRRSRALSPVGYSPSRER
YQEGPGPMLSHSVS
back to top

mRNA from alignment at H-paniculata_contig121:183..1267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig121.1327.1 ID=mRNA_H-paniculata_contig121.1327.1|Name=mRNA_H-paniculata_contig121.1327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1085bp|location=Sequence derived from alignment at H-paniculata_contig121:183..1267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCCCCAGAGGCTCTCGTCGGGCGTTTGTACGCTGGCCGTGGCCTCCA
AGACCACCTTACTCATAGCTCTCCCCCCCGAAACACACCCTTTGGGACTA
CCTCCCCGCATCGTCAAGACCCCATGCGCGAGAACAACCAGGATGCCAAA
AAAAATGGCAGCACTAACAATTTGTCATCTCCCATGGGTGAAGTGTCGGG
TGTCCTTCGCTCGCACGCAACGATTCCTCGGGACGCCTTGGTGGCTTTTC
CATCACATGGGAATACATCAGGACTCCCCTCTAAATGTGAACAGGACATT
ATGGTTCTTAGGCTCAGGCAACAAGGACACAGCAGTTCCATGGGACTTTC
CCCATCGAGGTCGCAGCCAAGCGTACTTCCCAACAGTCCGCCGCATATTG
GGGTTCGACGACGAACCTCAGGGGAATCTCGGTCAGAACCATCGTTTGCA
GCAGGGGAAAGGCTGGAGGCTCGTACATCTGAAGGTGCGGCGGGTGGAGC
TGCAGGGCGGCGAGCTTCTCGTCGGGCGCAAGCCAATGCCTGTATGACAG
CAATAGGAGGGGGGATGTCGTTGAGCCGCAGTCTAGGAGTATTGGGGCAA
AGTGGAACGGCGAAACCACTCACCGTTGCGATTGTGAACACAAAGGACGA
TGGCGCGCCGTACCTGCGTAGTGAGAGAATGTCGCCAAAGTCGGTCGTTC
GAAGGTCTAGGGCACTTTCGCCTGTTGGATACTCCCCCAGGTGATCGACT
GACTTCATTTCCCCAGTTGCTGTCGCCGATACGTGCATGCAGTCGCACTT
CGTGTGGTTCGTACGGCAGCATTTTCATTGCGTAAGACACTGATGTCATA
GGACTCGTGCGAAGAGGAGGGGTAGGTACCCACTGCGGCAGGTTCACGAT
TTTCCACTAGTCAGGTTTATTTACTCTCAAACTAAGTACTTAATGTCTTC
AAATGACGTAGATACCATTACTAAAATTTCACTCCCGTGTTCTATTGCCA
AAATCGTTGACCACTTAACAAACCACGAACAGTCGGGAGAGGTATCAAGA
AGGACCCGGACCAATGTTATCCCACTCCGTCTCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig121:183..1267+

>mRNA_H-paniculata_contig121.1327.1 ID=mRNA_H-paniculata_contig121.1327.1|Name=mRNA_H-paniculata_contig121.1327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig121:183..1267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCCCCAGAGGCTCTCGTCGGGCGTTTGTACGCTGGCCGTGGCCTCCA
AGACCACCTTACTCATAGCTCTCCCCCCCGAAACACACCCTTTGGGACTA
CCTCCCCGCATCGTCAAGACCCCATGCGCGAGAACAACCAGGATGCCAAA
AAAAATGGCAGCACTAACAATTTGTCATCTCCCATGGGTGAAGTGTCGGG
TGTCCTTCGCTCGCACGCAACGATTCCTCGGGACGCCTTGGTGGCTTTTC
CATCACATGGGAATACATCAGGACTCCCCTCTAAATGTGAACAGGACATT
ATGGTTCTTAGGCTCAGGCAACAAGGACACAGCAGTTCCATGGGACTTTC
CCCATCGAGGTCGCAGCCAAGCGTACTTCCCAACAGTCCGCCGCATATTG
GGGTTCGACGACGAACCTCAGGGGAATCTCGGTCAGAACCATCGTTTGCA
GCAGGGGAAAGGCTGGAGGCTCGTACATCTGAAGGTGCGGCGGGTGGAGC
TGCAGGGCGGCGAGCTTCTCGTCGGGCGCAAGCCAATGCCTGTATGACAG
CAATAGGAGGGGGGATGTCGTTGAGCCGCAGTCTAGGAGTATTGGGGCAA
AGTGGAACGGCGAAACCACTCACCGTTGCGATTGTGAACACAAAGGACGA
TGGCGCGCCGTACCTGCGTAGTGAGAGAATGTCGCCAAAGTCGGTCGTTC
GAAGGTCTAGGGCACTTTCGCCTGTTGGATACTCCCCCAGGGTTCCCCAG
AGGCTCTCGTCGGGCGTTTGTACGCTGGCCGTGGCCTCCAAGACCACCTT
ACTCATAGCTCTCCCCCCCGAAACACACCCTTTGGGACTACCTCCCCGCA
TCGTCAAGACCCCATGCGCGAGAACAACCAGGATGCCAAAAAAAATGGCA
GCACTAACAATTTGTCATCTCCCATGGGTGAAGTGTCGGGTGTCCTTCGC
TCGCACGCAACGATTCCTCGGGACGCCTTGGTGGCTTTTCCATCACATGG
GAATACATCAGGACTCCCCTCTAAATGTGAACAGGACATTATGGTTCTTA
GGCTCAGGCAACAAGGACACAGCAGTTCCATGGGACTTTCCCCATCGAGG
TCGCAGCCAAGCGTACTTCCCAACAGTCCGCCGCATATTGGGGTTCGACG
ACGAACCTCAGGGGAATCTCGGTCAGAACCATCGTTTGCAGCAGGGGAAA
GGCTGGAGGCTCGTACATCTGAAGGTGCGGCGGGTGGAGCTGCAGGGCGG
CGAGCTTCTCGTCGGGCGCAAGCCAATGCCTGTATGACAGCAATAGGAGG
GGGGATGTCGTTGAGCCGCAGTCTAGGAGTATTGGGGCAAAGTGGAACGG
CGAAACCACTCACCGTTGCGATTGTGAACACAAAGGACGATGGCGCGCCG
TACCTGCGTAGTGAGAGAATGTCGCCAAAGTCGGTCGTTCGAAGGTCTAG
GGCACTTTCGCCTGTTGGATACTCCCCCAGTCGGGAGAGGTATCAAGAAG
GACCCGGACCAATGTTATCCCACTCCGTCTCCTCGGGAGAGGTATCAAGA
AGGACCCGGACCAATGTTATCCCACTCCGTCTCC
back to top