mRNA_H-paniculata_contig12078.1314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12078.1314.1
Unique NamemRNA_H-paniculata_contig12078.1314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH)

HSP 1 Score: 73.9 bits (180), Expect = 3.230e-13
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    4 GVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCR-FAIFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            G+C+ACE GK S++      +  T + LEL+++D+ G +  +S  G R F  F+DD+ +M  V  L+ KSE +   K F+  V   +  RIKRLR+D GGE+
Sbjct:  489 GICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEF 590          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A830BAC2_9LAMI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BAC2_9LAMI)

HSP 1 Score: 72.4 bits (176), Expect = 1.060e-12
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 LGVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCR-FAIFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            LG C +C KGK +K P K   E R    L+L++TD+ G L   + GG   F  F DDY +   V  ++ KSE     K F  +V      RIK+LRSD+GGEY
Sbjct:  383 LGTCESCLKGKMTKSPYKGQME-RAEGLLDLIHTDVCGPLSVSARGGYSYFVTFTDDYSRYGFVYLMKYKSETFERFKDFRHEVENQLGRRIKKLRSDRGGEY 484          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: Q6L3X6_SOLDE (Polyprotein, putative n=1 Tax=Solanum demissum TaxID=50514 RepID=Q6L3X6_SOLDE)

HSP 1 Score: 72.0 bits (175), Expect = 1.540e-12
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    7 VCSACEKGKASKQPVKNYREERTTEPLELVNTDIAG--LGDKSFGGCRFAIFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            VC  C++GK +K P +  +  R  + L+L++TD+ G    D   G   F +F+DDY +M  V  +R KSE     KQF+  V    +LRIK LRSD GGE+
Sbjct:  602 VCETCQQGKQTKLPFQANQVWRANQKLQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRLKSEVFDVFKQFKALVENQCNLRIKALRSDNGGEH 702          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A151S1T9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S1T9_CAJCA)

HSP 1 Score: 70.9 bits (172), Expect = 1.870e-12
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 LGVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCR-FAIFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            L  CS C  GK ++   K +   R +E L+LV++D+ G L  KSF G   F IF+DD  +   V TL++K + L   KQF   V R +  ++KR+R+D GGEY
Sbjct:  160 LEKCSHCMAGKQTRVSFKKHPPSRKSELLQLVHSDVCGPLKVKSFSGALYFVIFIDDCSRKLWVYTLQRKDQVLERFKQFHALVERQSGKKLKRIRTDNGGEY 262          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A830CQX7_9LAMI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CQX7_9LAMI)

HSP 1 Score: 70.5 bits (171), Expect = 5.110e-12
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 LGVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCR-FAIFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            LG C +C KGK +K P K   + R    L+L++TD+ G L   + GG   F  F DDY +   V  ++ KSE     K F  ++      RIK+LRSD+GGEY
Sbjct:  383 LGTCESCLKGKMTKSPFKGQMK-RAEGLLDLIHTDVCGPLSVSARGGYSYFVTFTDDYSRYGFVYLMKYKSETFERFKDFRHEIENQLGRRIKKLRSDRGGEY 484          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A830BU05_9LAMI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=4 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BU05_9LAMI)

HSP 1 Score: 70.5 bits (171), Expect = 5.150e-12
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    1 LGVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCR-FAIFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            LG C +C KGK +K P K   E R    L+L++TD  G L   + GG   F  F DDY +   V  ++ KSE     K F  +V      RIK+LRSD+GGEY
Sbjct:  457 LGTCESCLKGKMTKSPYKGQME-RAKGLLDLIHTDXCGPLSVSARGGYSYFXXFTDDYSRYGFVYLMKYKSETFERFKDFRHEVENQLGRRIKKLRSDRGGEY 558          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 7.090e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   10 CSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCRFAI-FVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            C AC + K  + PV      RTT+PLEL+++D+ G +   S GG ++ + F DDY +   V  L+ KSE     +++   V     L++K LR+D GGEY
Sbjct:   12 CEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEY 111          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 70.1 bits (170), Expect = 7.220e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   10 CSACEKGKASKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCRFAI-FVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            C AC + K  + PV      RTT+PLEL+++D+ G +   S GG ++ + F DDY +   V  L+ KSE     +++   V     L++K LR+D GGEY
Sbjct:  409 CEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEY 508          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A6A3V0L6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V0L6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.500e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    7 VCSACEKGKA-----SKQPVKNYREERTTEPLELVNTDIAG-LGDKSFGGCRFAI-FVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            VC+ C  GK      S+ P K  +   +   L+L+++D+ G +  K+ GGC +A+ F+DD+ +   V  +++K+E L   K+F+ D+  A   +IKR+RSD GGEY
Sbjct:   16 VCAGCCMGKMREDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVHFMKKKAEVLEKFKKFKADMENATGRKIKRIRSDNGGEY 118          
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Match: A0A4Q3F441_9SPHI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3F441_9SPHI)

HSP 1 Score: 69.7 bits (169), Expect = 9.740e-12
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 LGVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAGLGDKSFGGCRFAI-FVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGEY 303
            +  C  C KGK  + P     E ++TEPL+L+++D+      S+GG R+ + FVDD+ +   V  L+ KSE       F+  +     L+IK++R+D GGEY
Sbjct:   97 IAKCEVCAKGKQCRTPFSKS-ETKSTEPLQLIHSDLMENKKPSYGGARYLLTFVDDFSRKVFVYFLKNKSEVFDTFIGFKNTIENQTGLKIKKMRTDNGGEY 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12078.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9LH44_ARATH3.230e-1339.22Copia-like retrotransposable element n=1 Tax=Arabi... [more]
A0A830BAC2_9LAMI1.060e-1241.75Retrovirus-related pol polyprotein from transposon... [more]
Q6L3X6_SOLDE1.540e-1240.59Polyprotein, putative n=1 Tax=Solanum demissum Tax... [more]
A0A151S1T9_CAJCA1.870e-1240.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A830CQX7_9LAMI5.110e-1239.81Retrovirus-related pol polyprotein from transposon... [more]
A0A830BU05_9LAMI5.150e-1241.75Retrovirus-related pol polyprotein from transposon... [more]
A0A6S7H8C9_PARCT7.090e-1237.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9DPP1_PARCT7.220e-1237.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A3V0L6_9STRA8.500e-1235.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Q3F441_9SPHI9.740e-1235.29Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12078contigH-paniculata_contig12078:7441..7743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.9
Seed ortholog evalue4e-10
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.98258-CDS-H-paniculata_contig12078:7440..77431622928923.98258-CDS-H-paniculata_contig12078:7440..7743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12078 7441..7743 +
1691480668.7790067-CDS-H-paniculata_contig12078:7440..77431691480668.7790067-CDS-H-paniculata_contig12078:7440..7743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12078 7441..7743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12078.1314.1prot_H-paniculata_contig12078.1314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12078 7441..7743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12078.1314.1

>prot_H-paniculata_contig12078.1314.1 ID=prot_H-paniculata_contig12078.1314.1|Name=mRNA_H-paniculata_contig12078.1314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
LGVCSACEKGKASKQPVKNYREERTTEPLELVNTDIAGLGDKSFGGCRFA
IFVDDYGKMRIVDTLRQKSEALWALKQFERDVPRANSLRIKRLRSDQGGE
Y
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mRNA from alignment at H-paniculata_contig12078:7441..7743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12078.1314.1 ID=mRNA_H-paniculata_contig12078.1314.1|Name=mRNA_H-paniculata_contig12078.1314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig12078:7441..7743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGT GAAAAATTATCGAGAAGAGCGGACAACCGAGCCGTTGGAGCTGGTGAACA CCGACATAGCCGGACTGGGGGATAAATCCTTCGGAGGATGCCGCTTCGCC ATCTTCGTCGACGACTACGGCAAAATGCGCATAGTCGATACCTTGCGACA AAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGATGTACCTA GAGCAAACAGTTTGCGGATTAAGCGCCTTCGCTCGGATCAGGGAGGAGAA TAT
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Coding sequence (CDS) from alignment at H-paniculata_contig12078:7441..7743+

>mRNA_H-paniculata_contig12078.1314.1 ID=mRNA_H-paniculata_contig12078.1314.1|Name=mRNA_H-paniculata_contig12078.1314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig12078:7441..7743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGT
GAAAAATTATCGAGAAGAGCGGACAACCGAGCCGTTGGAGCTGGTGAACA
CCGACATAGCCGGACTGGGGGATAAATCCTTCGGAGGATGCCGCTTCGCC
ATCTTCGTCGACGACTACGGCAAAATGCGCATAGTCGATACCTTGCGACA
AAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGATGTACCTA
GAGCAAACAGTTTGCGGATTAAGCGCCTTCGCTCGGATCAGGGAGGAGAA
TATCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCC
TGTGAAAAATTATCGAGAAGAGCGGACAACCGAGCCGTTGGAGCTGGTGA
ACACCGACATAGCCGGACTGGGGGATAAATCCTTCGGAGGATGCCGCTTC
GCCATCTTCGTCGACGACTACGGCAAAATGCGCATAGTCGATACCTTGCG
ACAAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGGATGTAC
CTAGAGCAAACAGTTTGCGGATTAAGCGCCTTCGCTCGGATCAGGGAGGA
GAATAT
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