mRNA_H-paniculata_contig12023.1294.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12023.1294.1
Unique NamemRNA_H-paniculata_contig12023.1294.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12023.1294.1 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 7.280e-104
Identity = 192/318 (60.38%), Postives = 230/318 (72.33%), Query Frame = 1 
Query:    1 SQLFQGKVLEAVESCSRAVELCEQDEDSTPDTDALGQALRQLGATQMLLDGAMDDAETSLLRAARLGSSGADQGKGLSVLAAFNASTGDDHRIEEAVDLWNEARATTKAAVKGLGATSDSPDSVQAGGDIGNDSAAIS-------LSHASVLCSAAQGDLLLGRGTAKASEILTEALKIRNKLLPPNHPATAWTLALLGRCHVIAGEAVTAEGLLRAALDGFKTVGGEEGSANSISNVAGRAPVAAG----PLLFSSPLHPFSKANALRAFSELLMNWEKRESEGGQVQRQAEQVESSLRLKPPGRITMHMLHLDDMY 921
            +QLFQGK+  AVE+ SRAV+LC+QDED+TPDTDALGQALRQLG  Q+L  G  DDAETSLLRAARLGS+ ADQGKGL+ +AAFN + GD+  +EEAV+L NEA ATT  + +    T+         G   ND+AA +       L+HASVL +AAQG+L+L RGTA ASE L EALKIR +LLP  HPATAWTL+LL RCHV AGEAVTAEGL RAALD        +G A  + +   R   +AG    PLLF+SPLHP +KA  LR +SELL+ WEKRE+EG  V RQAE+VESSL LKPP  +T+HMLHLDD+Y
Sbjct:  117 AQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQVL-SGEEDDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATTSESDEHKEPTAXXXXXXXXXGGXXNDAAASAATSKVARLAHASVLSTAAQGELVLERGTATASERLGEALKIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSL------QGIAEEVDDGIARRQRSAGTVALPLLFASPLHPHTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPVGLTLHMLHLDDVY 427
[Close]
BLAST of mRNA_H-paniculata_contig12023.1294.1 vs. uniprot
Match: A0A835ZDH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.320e-35
Identity = 122/335 (36.42%), Postives = 165/335 (49.25%), Query Frame = 1 
Query:    1 SQLFQGKVLEAVESCSRAVELCEQD-EDSTPDTDALGQALRQLGATQMLLDGAMDDAETSLLRAARLGSSGADQGKG-----------------LSVLAAFNAS--TGDDHRIEEAVDLWNEARATTKAAVKGLGATSDSPDSVQAGGDIGNDSAAISLSHASVLCSAAQGDLLLGRG------------TAKASEILTEALKIRNKLLPPNHPATAWTLALLGRCHVIAGEAVTAEGLLRAALDGFKTVGGEEGSANSISNVAGRAPVAAGPLLFSSPLHPFSKANALRAFSELLMNWEKRESEGGQVQRQAEQVESSLRLKPPGRITMHMLHL 909
            +QLFQGK+  A  +C+ AV  CE     +TPDT ALG ALR LG  Q LL G  D AETSLLRAARL    ADQ K                  LS LAA++ S  T + HR  +A++ W EA +   AA           D+  A          +  +HA  L + A+  L    G            T + S  L EALK+  + +  N P   W LA L RC  +AG AVTAEGL R+A++                +V G+  +A  P    SP + F     L  +S+LL+ WEKRE+ G ++Q++A+ +E+ L LK P R+++ MLHL
Sbjct:   58 AQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQ-LLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHR--DALEYWQEAVSVLTAA-----------DAQAAASACAKTKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKMDP-----------EDVRGKQALAMHP----SPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHL 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12023.1294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6E2_ECTSI7.280e-10460.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH7_9STRA3.320e-3536.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12023contigH-paniculata_contig12023:5089..7576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-10_001530.1
Exons5
Model size924
Cds size924
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12023.1294.1prot_H-paniculata_contig12023.1294.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12023 5089..7576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928918.150476-CDS-H-paniculata_contig12023:5088..51631622928918.150476-CDS-H-paniculata_contig12023:5088..5163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 5089..5163 -
1691480667.3761375-CDS-H-paniculata_contig12023:5088..51631691480667.3761375-CDS-H-paniculata_contig12023:5088..5163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 5089..5163 -
1622928918.1644788-CDS-H-paniculata_contig12023:5750..60471622928918.1644788-CDS-H-paniculata_contig12023:5750..6047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 5751..6047 -
1691480667.3859904-CDS-H-paniculata_contig12023:5750..60471691480667.3859904-CDS-H-paniculata_contig12023:5750..6047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 5751..6047 -
1622928918.1841574-CDS-H-paniculata_contig12023:6469..67961622928918.1841574-CDS-H-paniculata_contig12023:6469..6796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 6470..6796 -
1691480667.3934312-CDS-H-paniculata_contig12023:6469..67961691480667.3934312-CDS-H-paniculata_contig12023:6469..6796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 6470..6796 -
1622928918.2017264-CDS-H-paniculata_contig12023:7014..71281622928918.2017264-CDS-H-paniculata_contig12023:7014..7128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 7015..7128 -
1691480667.4039843-CDS-H-paniculata_contig12023:7014..71281691480667.4039843-CDS-H-paniculata_contig12023:7014..7128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 7015..7128 -
1622928918.2147195-CDS-H-paniculata_contig12023:7465..75761622928918.2147195-CDS-H-paniculata_contig12023:7465..7576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 7466..7576 -
1691480667.411466-CDS-H-paniculata_contig12023:7465..75761691480667.411466-CDS-H-paniculata_contig12023:7465..7576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12023 7466..7576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12023.1294.1

>prot_H-paniculata_contig12023.1294.1 ID=prot_H-paniculata_contig12023.1294.1|Name=mRNA_H-paniculata_contig12023.1294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
SQLFQGKVLEAVESCSRAVELCEQDEDSTPDTDALGQALRQLGATQMLLD
GAMDDAETSLLRAARLGSSGADQGKGLSVLAAFNASTGDDHRIEEAVDLW
NEARATTKAAVKGLGATSDSPDSVQAGGDIGNDSAAISLSHASVLCSAAQ
GDLLLGRGTAKASEILTEALKIRNKLLPPNHPATAWTLALLGRCHVIAGE
AVTAEGLLRAALDGFKTVGGEEGSANSISNVAGRAPVAAGPLLFSSPLHP
FSKANALRAFSELLMNWEKRESEGGQVQRQAEQVESSLRLKPPGRITMHM
LHLDDMY*
back to top

mRNA from alignment at H-paniculata_contig12023:5089..7576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12023.1294.1 ID=mRNA_H-paniculata_contig12023.1294.1|Name=mRNA_H-paniculata_contig12023.1294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2488bp|location=Sequence derived from alignment at H-paniculata_contig12023:5089..7576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCAGCTGTTCCAGGGAAAGGTTCTCGAGGCTGTGGAATCGTGTTCGCG
GGCGGTGGAGCTATGTGAACAGGATGAGGATAGTACTCCTGACACAGACG
CACTTGGACAGGTGCATTGCCAACCTTTGTTCCAAATTCCAAAGCTGCTC
TCACGCTCATGACGTTCCCGTATGTCGCCTGGTGGATGTGTTGATTGGTC
AAGTCAGAGACTGGTTGTGATGCGCTGGATTCAGTCAGCATGTACCTGTC
CAAACACTGTACAGGGCCTGAGAGCATAGTTGAGATAGAGGGGCATTATT
CATGTGCGTTATTTAGCGCATTCTTCACCGCCAAAAATTGAATTTAATGA
GCAGAGACAGTGTCACGGTTAGAGCCTATCCTGCTTTTTTATTTCTACTC
GTTATTCCAGCTCTTCCAGATTTGTCTTTCTTTCTATTTCTTCCACAGGC
TCTTCGGCAGCTAGGGGCGACTCAGATGCTGCTGGACGGGGCTATGGATG
ATGCGGAAACGAGCTTGTTGAGGGCAGCGAGGCTTGGTTCCTCTGGCGCT
GACCAGGGCAAGGTAATCAATCATGAGTATCCTTTGCACACGTCGTTATT
GCCCTTTTACATATCTTCAAGCCGAAGCTATACACTTTTGAAGAATGCGC
TGCAACTCGACACGGTAATCGCAACCAAGGTATACCTTTGCTGTATCGTT
ACTGTAGCACTGTCCTGTGTTTACAGCCAAGCAAACCGCCATCATCTTCT
CAAACGTGGAACACAACTCATTGCACGCAGGGCCTCTCAGTTTTGGCCGC
GTTCAACGCGTCTACGGGGGACGACCACAGGATTGAGGAGGCCGTCGATC
TATGGAACGAGGCGCGCGCCACAACCAAAGCGGCCGTAAAAGGGCTGGGC
GCAACATCAGATTCACCAGACAGTGTACAAGCTGGTGGTGACATTGGTAA
TGATAGCGCTGCAATTAGCCTATCCCATGCATCCGTGCTCTGCAGCGCTG
CGCAAGGGGATTTGCTCCTGGGCCGGGGAACGGCGAAAGCTTCGGAAATC
TTGACGGAGGCTCTCAAAATTAGGAATAAACTCCTTCCCCCCAATCATCC
TGCTACGGTCAGTTCTGTCACTGTAGCCCTCCGTCGTACGAATACCCTCT
ATTTGCAGCAGCGCATTTACTGTTTCCAAATACTCGAAAGTGCACTTGAG
TATTGCACCTTGTGTCACCCGTGAGACCTGCCCCAAGATATGACATATTG
GATAAGTAACGGGTCATGAAAACATCATGGCTGCCGTTCACGTAGGCATG
TTGCACGAAGATCTGAAGTTTTTATCCAGCATCCCAACTGTGTGTACTCA
AATGCTGTTTGTAGTACTGGTTTGTAACAAGACGGGCACTACTGTAATTA
CTACCTCTACACGGTATGGCTTTCTGACCGACGTCTCTTTGTATGCGGTG
CGCGTGCGGTATCTATCTTCTGTGCCCAAAGTTGCAACCGCTCAAAGTTA
ACTCGCGGATTTTTTTTGTTCTTCTCCAGGCGTGGACGCTTGCTTTGTTA
GGACGATGTCACGTCATTGCCGGGGAAGCTGTGACTGCCGAGGGGCTCTT
GCGTGCTGCTCTAGACGGATTCAAGACCGTCGGCGGGGAAGAGGGCAGTG
CAAATAGCATTAGCAACGTCGCCGGACGGGCACCGGTAGCAGCAGGACCG
CTTTTGTTCTCATCGCCATTGCATCCCTTTTCCAAAGCGAATGCATTGCG
AGCTTTCTCGGAGTTGCTTATGAACTGGGAGAAGAGGGAGTCGGAGGGGG
GACAAGTGCAGCGACAAGCGGAACAGGTGAGACGCGTGGTTTACTTTGTA
TTTATCTTGCTTCCTCGTCAAGAACCATCCCAGTGAGAGAATGAGAGTAT
CGCTGCTCGACATATTACAGTATACAGTTGTACAAAAGTGAGCACGACGC
TGTCTTCTCGAATGCCGCTCCAAGTGTTTGACTCTCGGGGGACGTACTGA
GTTTTGGATGGCGTGGTTGTTGGATCATTGACAACGCGTCTTCGGGAGGA
TGGAGCTTTGTTCATATCATAGCGATTTCCGACGACAGCCAATCGCACTT
TATTACGTTGCAAAATATGGTTCAAGAAATTTTGACCTATCTTATTTACC
TCAATCCTAATCTTTCAGACCAATTTCCTTGGCTTCCTGCGGGATAACAA
TAATTATATCGTCTTTGTAGTAGAGTCCACGTGCAGATGGAAACACGCCA
AAAAGAACAAAGCACAACAGTGCCATGAATTTGAACGCTTATGTGGTGGC
ATTTACATGAACATTACGATCTGATCGACTTGGCGTCAAAAGCCGCGAGT
AAGAGTCTCATTCAAACTCCCTTGTGTGCGTTGGCTCTCTGTTTCTTTTG
TTGGATGCCCCAGGTGGAGAGCTCGTTGCGACTGAAGCCACCAGGTCGAA
TAACAATGCACATGCTACACCTCGATGACATGTACTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12023:5089..7576-

>mRNA_H-paniculata_contig12023.1294.1 ID=mRNA_H-paniculata_contig12023.1294.1|Name=mRNA_H-paniculata_contig12023.1294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig12023:5089..7576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCAGCTGTTCCAGGGAAAGGTTCTCGAGGCTGTGGAATCGTGTTCGCG
GGCGGTGGAGCTATGTGAACAGGATGAGGATAGTACTCCTGACACAGACG
CACTTGGACAGTCCCAGCTGTTCCAGGGAAAGGTTCTCGAGGCTGTGGAA
TCGTGTTCGCGGGCGGTGGAGCTATGTGAACAGGATGAGGATAGTACTCC
TGACACAGACGCACTTGGACAGGCTCTTCGGCAGCTAGGGGCGACTCAGA
TGCTGCTGGACGGGGCTATGGATGATGCGGAAACGAGCTTGTTGAGGGCA
GCGAGGCTTGGTTCCTCTGGCGCTGACCAGGGCAAGGCTCTTCGGCAGCT
AGGGGCGACTCAGATGCTGCTGGACGGGGCTATGGATGATGCGGAAACGA
GCTTGTTGAGGGCAGCGAGGCTTGGTTCCTCTGGCGCTGACCAGGGCAAG
GGCCTCTCAGTTTTGGCCGCGTTCAACGCGTCTACGGGGGACGACCACAG
GATTGAGGAGGCCGTCGATCTATGGAACGAGGCGCGCGCCACAACCAAAG
CGGCCGTAAAAGGGCTGGGCGCAACATCAGATTCACCAGACAGTGTACAA
GCTGGTGGTGACATTGGTAATGATAGCGCTGCAATTAGCCTATCCCATGC
ATCCGTGCTCTGCAGCGCTGCGCAAGGGGATTTGCTCCTGGGCCGGGGAA
CGGCGAAAGCTTCGGAAATCTTGACGGAGGCTCTCAAAATTAGGAATAAA
CTCCTTCCCCCCAATCATCCTGCTACGGGCCTCTCAGTTTTGGCCGCGTT
CAACGCGTCTACGGGGGACGACCACAGGATTGAGGAGGCCGTCGATCTAT
GGAACGAGGCGCGCGCCACAACCAAAGCGGCCGTAAAAGGGCTGGGCGCA
ACATCAGATTCACCAGACAGTGTACAAGCTGGTGGTGACATTGGTAATGA
TAGCGCTGCAATTAGCCTATCCCATGCATCCGTGCTCTGCAGCGCTGCGC
AAGGGGATTTGCTCCTGGGCCGGGGAACGGCGAAAGCTTCGGAAATCTTG
ACGGAGGCTCTCAAAATTAGGAATAAACTCCTTCCCCCCAATCATCCTGC
TACGGCGTGGACGCTTGCTTTGTTAGGACGATGTCACGTCATTGCCGGGG
AAGCTGTGACTGCCGAGGGGCTCTTGCGTGCTGCTCTAGACGGATTCAAG
ACCGTCGGCGGGGAAGAGGGCAGTGCAAATAGCATTAGCAACGTCGCCGG
ACGGGCACCGGTAGCAGCAGGACCGCTTTTGTTCTCATCGCCATTGCATC
CCTTTTCCAAAGCGAATGCATTGCGAGCTTTCTCGGAGTTGCTTATGAAC
TGGGAGAAGAGGGAGTCGGAGGGGGGACAAGTGCAGCGACAAGCGGAACA
GGCGTGGACGCTTGCTTTGTTAGGACGATGTCACGTCATTGCCGGGGAAG
CTGTGACTGCCGAGGGGCTCTTGCGTGCTGCTCTAGACGGATTCAAGACC
GTCGGCGGGGAAGAGGGCAGTGCAAATAGCATTAGCAACGTCGCCGGACG
GGCACCGGTAGCAGCAGGACCGCTTTTGTTCTCATCGCCATTGCATCCCT
TTTCCAAAGCGAATGCATTGCGAGCTTTCTCGGAGTTGCTTATGAACTGG
GAGAAGAGGGAGTCGGAGGGGGGACAAGTGCAGCGACAAGCGGAACAGGT
GGAGAGCTCGTTGCGACTGAAGCCACCAGGTCGAATAACAATGCACATGC
TACACCTCGATGACATGTACTGAGTGGAGAGCTCGTTGCGACTGAAGCCA
CCAGGTCGAATAACAATGCACATGCTACACCTCGATGACATGTACTGA
back to top