mRNA_H-paniculata_contig11992.1261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11992.1261.1
Unique NamemRNA_H-paniculata_contig11992.1261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 183 bits (465), Expect = 1.850e-51
Identity = 104/285 (36.49%), Postives = 162/285 (56.84%), Query Frame = 1
Query:    1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            I  +WV+ +K D      ++KARLVVQG+ Q+ G+D    FAPV +  + R +L+ A  +D  +  L +  AFLNG + E V+     A+VGSL+ L+ CTR DI  +V   AR+M+ P   H  A K + RYL G PD+ IT+    P L  + +A +       RSTTG  F F  G + ++S LQ   A STTEAE IA AT  K+G++L  + ++L L L +  + +D++ +L L  N   S+ SKHI +     ++ + R+++  +++ +   +AD LT+
Sbjct:   98 IPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAGRQDLDLHQLDIKTAFLNGTIDEEVYTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDLHTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTK 382          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO)

HSP 1 Score: 185 bits (470), Expect = 1.680e-49
Identity = 105/285 (36.84%), Postives = 163/285 (57.19%), Query Frame = 1
Query:    1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            I  +WV+ +K D      ++KARLVVQG+ Q+ G+D    FAPV +  + R +L+ A A+D  +  L +  AFLNG + E V+     A+VGSL+ L+ CTR DI  +V   AR+M+ P   H  A K + RYL G PD+ IT+    P L  + +A +       RSTTG  F F  G + ++S LQ   A STTEAE IA AT  K+G++L  + ++L L L +  + +D++ +L L  N   S+ SKHI +     ++ + R+++  +++ +   +AD LT+
Sbjct: 1784 IPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGMWLRKLFQDLSLDLHTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTK 2068          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 8.160e-49
Identity = 108/283 (38.16%), Postives = 157/283 (55.48%), Query Frame = 1
Query:    1 IGTRWVFNVKADRKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITY---SRCEPKLLGYSNASYCT----RSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGL-QLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            IGTRWV+ VK D +FKAR+VVQGW+Q+HGVDC +TF PV R+ S+RLLLA+A                                                       AR MS+P + HL  +K IFRYL+  P++ + Y   SR E  L  YS+ASY +    +S TG+M F A  L++FSS +Q+I A S++E E   + + AK G+Y   +  ELG  QL   ++ +D R +L L +N  +S+ S+HI++R+ AL+ W+   ++ +DHVPS+  L+DILT+
Sbjct:  638 IGTRWVYRVKTDGRFKARVVVQGWAQQHGVDCLTTFVPVCRIGSQRLLLAIA-------------------------------------------------------ARRMSSPREGHLANIKSIFRYLRKRPNLSLVYRKDSRFE--LPCYSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2Z6PCB3_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PCB3_TRISU)

HSP 1 Score: 176 bits (446), Expect = 2.490e-46
Identity = 104/292 (35.62%), Postives = 166/292 (56.85%), Query Frame = 1
Query:    1 IGTRWVFNVKADRK-----FKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPA--MVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDV----PITYSRCEPKLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGL-QLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            I  +WV+ +K + K      KARLV +G+ QK G+D G  FAPV R+E+ RL+  +A   DW ++ + V  AFLNG ++E VF  Q P   ++GSL  L   TR D+ +SV   +R+M  P   HL+AVKRI RY++G  D     P    + E KL+GY+++++C      +ST G +F+F    + + S  + + A S+ EAE IA +    Q I+L  +  E+ L +  +  ++ DN  +++LA N      SKHI +RF  L++ +    L +++  S +Q+AD+ T+
Sbjct:  881 IDVKWVYKLKMNSKGEVTRHKARLVARGFLQKEGIDYGEVFAPVTRMETIRLVTVIANINDWPMYQMDVKSAFLNGPIEEEVFVTQPPGYELIGSLRYLCN-TRPDLAYSVGIVSRFMDKPKSSHLIAVKRILRYVKGTIDYGVFFPANDRKNECKLMGYTDSNWCGDVEDRKSTAGYIFYFGEAPISWCSKKEPVVALSSCEAEYIAASLRTCQAIWLRNLIEEISLVKCNTVTLKVDNVSAINLAKNPIAHGRSKHIEMRFHYLREQVNNENLTLEYCKSDEQVADLFTK 1171          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A438GEX0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GEX0_VITVI)

HSP 1 Score: 170 bits (431), Expect = 2.420e-44
Identity = 103/289 (35.64%), Postives = 158/289 (54.67%), Query Frame = 1
Query:    1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEP-KLLGYSNASY--CTRS---TTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLT---SCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            IG +WVF  K D      ++KARLV +G++QK G+D   TF+PV + +S R++LAL    D  +    V  AFLNGKL+E V+ KQ      S      CTR DI F+V    RY S P   H  A K++ RYLQG  D  + Y R    +++GYS++ +  C  S   T+G +F  A G + + S  Q +TATST EAE I+       G++L      L +  +      +  DN  ++ +A N+   S SKHI I++ A+++ ++  +++I+H+ +   +AD LT+
Sbjct:  745 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQTDVKTAFLNGKLEEEVYMKQPEGFPSSDGEQLVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDSDFAGCVDSRISTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 1033          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A7H4LHQ9_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LHQ9_WHEAT)

HSP 1 Score: 148 bits (374), Expect = 5.120e-39
Identity = 102/289 (35.29%), Postives = 153/289 (52.94%), Query Frame = 1
Query:    1 IGTRWVFNVKADR-----KFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPK---LLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICREL-GLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            IG +WVF VK D      K KARLV +G+ Q+ GVD    FAPV R+ES RL L+  +                      +V   +  ++VGSL  L   TR D+ +SV   +RYM  P  +HL  VK+I RY++G       Y+R +     L+GYS++         +ST G  +F    L+ + S  QK+ A S+ EAE IA AT A QG++L  +  +L   Q    ++R DN+ ++ L  N  + + SKHI IR+  +++ +   ++ +D+V + DQLADILT+
Sbjct:   56 IGLKWVFKVKKDSQGAVVKHKARLVAKGYVQQQGVDFEEVFAPVARMESARLKLSKRSKAP-------------------TVDSTEYRSIVGSLRYLVN-TRPDLAYSVGIVSRYMENPTTEHLTVVKQILRYVKGTLKYGCKYTRKKEDKSLLVGYSDSDLAGDVDDRKSTWGVAYFLGENLITWLSQKQKVVALSSCEAEYIAAATAACQGVWLSRLLADLTNQQPEQVKLRVDNKSTISLCKNPVHHNRSKHIDIRYHYIRECVEEGKVEVDYVSTKDQLADILTK 324          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.100e-37
Identity = 100/290 (34.48%), Postives = 146/290 (50.34%), Query Frame = 1
Query:   70 WSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKE-----------------------------SVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYCT-----RSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSD----NRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            W+Q  G D G TFAPV RL+S R+LLA+A  KD  V  L V  AFL   ++E                             + F  +  A++GS+I L Q TR+DI +   Q AR MS P + H+ A K + RYL G  D  ITY R    L   S+A++       +S +  +   +   V F   LQ +TA ST EAEL+A A   K+ I+   + +ELG      E RS     N  +LH+  N  +S  +KH+A+RF  +++ ++  ++ I ++P+ D LADI T+
Sbjct:  385 WNQVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEEDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELSAIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGF---GSEFRSAPLYINTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTK 671          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A0J7K788_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K788_LASNI)

HSP 1 Score: 142 bits (357), Expect = 8.650e-37
Identity = 87/285 (30.53%), Postives = 149/285 (52.28%), Query Frame = 1
Query:    1 IGTRWVFNVKADRK-----FKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYCT-----RSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            + ++W+F +K D K     +KARLV +G +Q+HG+D   TF+PV R  + RLL+++A   D  +  L V  AFLNG L+E VF +Q    +                             + H +A KR+ RYL+G  D  +T+++    ++G+ +A +       RS TG  F    GLV +S   QK  ATS+ EAE +AL+   ++ I+L  + ++L  +    EV +D++ +  +A      S +KHI I+   ++D + + +L + ++P+ +  AD+LT+
Sbjct:   38 VNSKWIFKIKKDEKGNTTRYKARLVAKGCTQRHGIDYFETFSPVVRTSTIRLLMSVAIEMDLKIRHLDVATAFLNGDLEEEVFMRQPQGFI-----------------------VKGKENKSHWLAAKRVLRYLKGTKDFCLTFNKTGNNIVGFVDADWGMDINDRRSYTGYAFKVGGGLVSWSCRKQKTVATSSAEAEYMALSDGCREAIFLQNLLQDLFGKYFPVEVYNDSQFAQKMATYHMSHSRTKHIDIKHHYVRDVVEKKRLNLKYLPTENMCADVLTK 299          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.510e-36
Identity = 79/198 (39.90%), Postives = 123/198 (62.12%), Query Frame = 1
Query:  253 MVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYC-------TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            +VGSL+ LT  TR++I ++V+   R M+ P  QH+V  KR+ RYL+G PD+P+ + R +  L  Y +AS+         RS+TG +F  A G+V  +S LQK+TA S+  AE+IA+AT A++ IYL G+  ELG    +  + SD+ G++  A NS +   SK I+ R+  L+  + +  +++  V S +QLADILT+
Sbjct:  488 IVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTK 685          
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2N9G102_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G102_FAGSY)

HSP 1 Score: 141 bits (356), Expect = 2.650e-34
Identity = 92/295 (31.19%), Postives = 152/295 (51.53%), Query Frame = 1
Query:    1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKD----WTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEP-KLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRS-----DNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
            IG +WVF  K D      ++KARLV +G++QK G++   TF+P+ + +S R++LAL    D    W    + + +  +    K                    CTR DI F+V    RY S P   H  A K++ RYLQG  D  + Y R +  +++GYS++ +       +ST+G +F  A+G+V + S  Q +TATST EAE ++       G++L       GL++     R      +N  ++ +A N+   S SKHI I++ A+++ I+  +++I+HV +   +AD LT+
Sbjct: 1209 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGINYTETFSPISKKDSLRIILALVAHFDLELIWVRHLMSLALRSIETDFKV-------------------CTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKSTSGYIFLMASGVVSWRSAKQTLTATSTMEAEFVSCFEATSHGVWLKSFIS--GLRIMDSISRPLRMYCNNSAAVFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTELMIADPLTK 1482          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6UYX8_9CHLO1.850e-5136.49Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A2P6V0L8_9CHLO1.680e-4936.84Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6H5JV56_9PHAE8.160e-4938.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z6PCB3_TRISU2.490e-4635.62Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A438GEX0_VITVI2.420e-4435.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A7H4LHQ9_WHEAT5.120e-3935.29Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]
A0A6H5KBU1_9PHAE2.100e-3734.48CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0J7K788_LASNI8.650e-3730.53Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]
A0A6H5J897_9PHAE1.510e-3639.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2N9G102_FAGSY2.650e-3431.19Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11992contigH-paniculata_contig11992:3057..4391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog7029.ACYPI088512-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size825
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11992.1261.1prot_H-paniculata_contig11992.1261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11992 3354..3629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.5479152-UTR-H-paniculata_contig11992:3056..33531622928913.5479152-UTR-H-paniculata_contig11992:3056..3353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11992 3057..3353 -
1691480665.4101813-UTR-H-paniculata_contig11992:3056..33531691480665.4101813-UTR-H-paniculata_contig11992:3056..3353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11992 3057..3353 -
1622928913.5796168-UTR-H-paniculata_contig11992:3629..36311622928913.5796168-UTR-H-paniculata_contig11992:3629..3631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11992 3630..3631 -
1691480665.4291925-UTR-H-paniculata_contig11992:3629..36311691480665.4291925-UTR-H-paniculata_contig11992:3629..3631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11992 3630..3631 -
1622928913.595445-UTR-H-paniculata_contig11992:4141..43911622928913.595445-UTR-H-paniculata_contig11992:4141..4391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11992 4142..4391 -
1691480665.4382935-UTR-H-paniculata_contig11992:4141..43911691480665.4382935-UTR-H-paniculata_contig11992:4141..4391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11992 4142..4391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.564032-CDS-H-paniculata_contig11992:3353..36291622928913.564032-CDS-H-paniculata_contig11992:3353..3629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11992 3354..3629 -
1691480665.4207835-CDS-H-paniculata_contig11992:3353..36291691480665.4207835-CDS-H-paniculata_contig11992:3353..3629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11992 3354..3629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11992.1261.1

>prot_H-paniculata_contig11992.1261.1 ID=prot_H-paniculata_contig11992.1261.1|Name=mRNA_H-paniculata_contig11992.1261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPD
VPITYSRCEPKLLGYSNASYCTRSTTGTMFFFANGLVHFSS*
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mRNA from alignment at H-paniculata_contig11992:3057..4391-

Legend: UTRpolypeptideCDS
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>mRNA_H-paniculata_contig11992.1261.1 ID=mRNA_H-paniculata_contig11992.1261.1|Name=mRNA_H-paniculata_contig11992.1261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-paniculata_contig11992:3057..4391- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGCACGCGCTGGGTATTTAATGTAAAAGCAGACAGAAAATTCAAGGC TCGGCTCGTGGTACAAGGCTGGTCGCAAAAACATGGGGTTGACTGCGGGA GTACCTTTGCACCTGTATACAGACTAGAGAGCCGGCGACTACTGCTAGCA CTAGCGACGGCAAAGGATTGGACCGTATTTGCACTATATGTTCCAGTTGC TTTTCTAAACGGCAAGCTGAAGGAGAGCGTCTTCTGCAAACAAGCCCCTG GTTTTGAGAAGACTCACCCTACTACTGGACAACCCTACGTGATAAGTTTG AAAAAATCGATATATGGGTTGCGCCAAAGCCCAAATGTGTGGAATCATAC AATCGACAACGAGCTGAGGAGCATGGGTTTTACACCAACTGTCTCGGACC CCTGTGTCTACAGTAAAGGAAGCAACGACACCTACATTATGCTTAGTCTT TTCGTCGACGATATACTAGTGACAGGACCAACGAACAGGCCGCTAATGGA CGTGCGCAACAAGCTGATGAATAAATTTACTATCACGGACCTTGGAGAAG TATCGCTTATACTTGGGATGGAGGTACTACGCAACAAACAAACCGGCACT CTACAACTATCACAGCACAAGTATGTACTATCTGTTTTGGACAGGTTCAA CATGTCATCAGCGAATCCCACGAAAACACCTGGAGTTAAAACGGACTCCG CTACTACTACTAGCGAAGAAAGTCAACTACTGGATGCAGCAGCTACAAAG GAGTATCAAGCCATGGTAGGGAGCCTCATCTCCTTGACCCAGTGTACAAG ATTCGATATCTGCTTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCAC CAATTCAACAGCATCTAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAG GGTCACCCAGATGTTCCCATCACGTACAGCAGATGTGAGCCGAAACTACT TGGCTATTCTAATGCATCATACTGCACACGGTCTACAACAGGTACTATGT TCTTCTTTGCCAACGGATTGGTACATTTCTCATCCTGACTACAGAAGATA ACGGCTACAAGCACAACTGAGGCAGAACTCATCGCACTGGCTACATGCGC AAAACAAGGCATTTACCTTCTGGGTATCTGCAGGGAGCTGGGTCTTCAAC TGACTAGCTGCGAGGTTCGAAGTGACAACCGGGGATCTCTTCATCTCGCG GCCAACAGCAATTACTCAAGCCACAGCAAACATATCGCCATCAGGTTTGC AGCACTGAAAGACTGGATCAGGAGACATCAGCTTATCATCGATCATGTGC CGAGTACTGATCAGCTAGCTGACATTCTCACCAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11992:3057..4391-

>mRNA_H-paniculata_contig11992.1261.1 ID=mRNA_H-paniculata_contig11992.1261.1|Name=mRNA_H-paniculata_contig11992.1261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig11992:3057..4391- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGGGAGCCTCATCTCCTTGACCCAGTGTACAAGATTCGATATCTG
CTTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCACCAATTCAACAGC
ATCTAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAGGGTCACCCAGAT
GTTCCCATCACGTACAGCAGATGTGAGCCGAAACTACTTGGCTATTCTAA
TGCATCATACTGCACACGGTCTACAACAGGTACTATGTTCTTCTTTGCCA
ACGGATTGGTACATTTCTCATCCTGAATGGTAGGGAGCCTCATCTCCTTG
ACCCAGTGTACAAGATTCGATATCTGCTTCAGCGTCATCCAAGCGGCACG
CTACATGAGCGCACCAATTCAACAGCATCTAGTCGCAGTAAAGCGGATTT
TTCGGTATTTACAGGGTCACCCAGATGTTCCCATCACGTACAGCAGATGT
GAGCCGAAACTACTTGGCTATTCTAATGCATCATACTGCACACGGTCTAC
AACAGGTACTATGTTCTTCTTTGCCAACGGATTGGTACATTTCTCATCCT
GA
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