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Homology
BLAST of mRNA_H-paniculata_contig11982.1255.1 vs. uniprot
Match: D8LCN8_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN8_ECTSI) HSP 1 Score: 291 bits (746), Expect = 8.850e-90 Identity = 185/298 (62.08%), Postives = 214/298 (71.81%), Query Frame = 1
Query: 1 RWLKQRSAGVPGSSSPPKGVTLFHNADTSVAGGGGGKKGDGVEHGGDGK-CIVVWPLRLLALRGKGDEARERVQSSLHYEIKVSAEDSQ----DPEDAETSGVRVLLASPDALEAKDKEVWCTVEELLAMLLVGVKAQMEEAHGVTVFTCNLSAPSCLGDVHRVALQRSVFLAGMAPGRFVGAPLAATVGYLWGRPTPELKQPEDLIVSVGMGASFLDVAVMSAKREKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVK----EGAGDAMQYQVKASSGDPACGGLDMDYKVARALL 867
RWLK R+ G ++P KGV LFH DG VVWPLRLLALRGKG EA +RVQSSL ++I+VS+ +S+ D D +TSGVRVLL SPDA E KD+EVW T EE+LAMLL GVKA+ EEAHGV + TCNLSAP CLGD+HRVALQRSVFLAGM PGRFVG+PLAA VGYLWGR PELK P+DLI++VGMGASFLDV++++ RE S XXXXXXXXXXXXXXXXXXXXX + M+Y+V+AS+GD ACGGLDMDY VARALL
Sbjct: 132 RWLKSRAGGGQAPAAPAKGVKLFHAVGGXXXXXXXXXXXXXXXXXXDGNGAAVVWPLRLLALRGKGAEATQRVQSSLRHDIEVSSVESKEATDDQGDGDTSGVRVLLTSPDAAETKDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIKTCNLSAPGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGYLWGRSNPELKGPDDLILAVGMGASFLDVSLIAPTREASPPSADSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAEAQGMEYRVRASAGDSACGGLDMDYLVARALL 429
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 867 |
Cds size | 867 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11982.1255.1 >prot_H-paniculata_contig11982.1255.1 ID=prot_H-paniculata_contig11982.1255.1|Name=mRNA_H-paniculata_contig11982.1255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
RWLKQRSAGVPGSSSPPKGVTLFHNADTSVAGGGGGKKGDGVEHGGDGKC IVVWPLRLLALRGKGDEARERVQSSLHYEIKVSAEDSQDPEDAETSGVRV LLASPDALEAKDKEVWCTVEELLAMLLVGVKAQMEEAHGVTVFTCNLSAP SCLGDVHRVALQRSVFLAGMAPGRFVGAPLAATVGYLWGRPTPELKQPED LIVSVGMGASFLDVAVMSAKREKSSSSSSGTGAIATADALNKKKKAKAGG GGKVKEGAGDAMQYQVKASSGDPACGGLDMDYKVARALL back to topmRNA from alignment at H-paniculata_contig11982:1367..7559+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11982.1255.1 ID=mRNA_H-paniculata_contig11982.1255.1|Name=mRNA_H-paniculata_contig11982.1255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6193bp|location=Sequence derived from alignment at H-paniculata_contig11982:1367..7559+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGTGGCTGAAGCAAAGGTCGGCAGGTGTGCCGGGATCGTCGTCCCCTCC
GAAAGGCGTTACGCTATTTCATAACGCTGACACTAGCGTAGCCGGCGGCG
GCGGCGGCAAAAAGGGTGATGGAGTTGAACATGGAGGTGATGGCAAGTGT
ATCGTGGTGTGGCCTCTCCGGCTGCTGGCCTTGCGGGGCAAGGGCGATGA
GGCGAGGGAGCGGGTTCAGTCGTCTCTGCACTATGAGATCAAGTAAGTTG
TTTTATTTGTTTGTTTCCTTGCGGGGGGGGGCGGGGAGGATTGCTGATGA
TAGCTTCACGGATAGAAGAACACCTTAACTATTGAGAATACGGTTTGAAA
ACAGGTATCACCGAGGTGCAAACGCTTTTTGAAGGCGATGAATTTTCTTG
GCAACTGCGGCGACTGTAGATTGCTATGATGGCGAGTGGGCCGTCGAAAA
GATGTTGCCCAGGAGAGTTATTTTTCGGTTGACCGCGGGCTTTCGACCGC
GGAAGCTCCGTTCTCAAGTCGAGGGTTGTCACCGAAGGGGAGAGAAATCA
GTTATAACCGGAACCCTGTTAACCGGTTCACGGAAAAAAAGGAACGTGTT
TTTTCCCTGATTCAGCGAAAAAATGGGGATGTGGAGGCGCACCGCCGAAC
GCAGAACTGGGAAAATCGCACCCATGTGTTGGGCATAGAATCTAATAGAA
TCTGGTATATTCCAGAGCGCGTTATGCATGCGTCCACACCCCCCAACGAT
ATTTCCACGAGATTCATGGTGCATTTTTTCATTAAAAGTGTTCCGTTATT
TTTCCACAAACGATGAGATTCCGTTCTTGCCTTTGCCAATTCTCCCGTCG
ACCCATCGCCGCACCACCAACCTACCACCTAACCTCTATAACTGCCCCCA
TGAGACACAAACCAGCCGGTCAATTTATGCATCATCTCTGCTTTAGATCA
TGAGCAAAACGTAAGGTCACCTGTTTATTAACCTATCGATGAAGCGGCGT
ATGTATTCTTGTCTTCGTTGGAAGGTATAAGCACAAAAGTATGATGACTC
TTTTCGAGTCTGTGTGTGTGTTTTTTTTTTTGTTTTTTTTTTACATGCGA
AGAGCGGGTGTAAGCAGGATGACGAACACCACCTCCCTGCCGAGAATCAT
GAATACTTCGATCGGGTGAAAATATGATGAGCATATCACAATATTAACAG
AACTAGCATACGAAAGCCGGATATGATTTTCGTAGTGTGACTATCAGATA
AAGTTTCCTCCGGAGCTCGTGGAACAAAAAAAACAAATGGAGGATGACAA
GGTGGGGAGAAACTCGCCTCCGACCGCTCTGTGGTAGGATCGACCCCGCA
ATTGTGCAGACTCAAAGCCCTGTGTACAGGGCTCGTGGTTTAGGTGTGGC
GGTTTGGCCTCCTGTATGGAAACTCGCAAAAAACGAGAGTCTAAGCAGCA
GCCCACCATGGCAAAAGAACAACCACCTGTTGACGAGCTGTGTTACTGGT
GAAAACTCTGTTCGTTGTTTCGGTCTTGAGTCCGACGGTGATATCGGGTG
ACTAGGCGAGTGATTCTTTCACCACACTTTCTGTATTACGACACGACAGG
ATTTAGACAGAATAGTTCAAATGCAAGAAAAAAAAAAAAAATGTCGAAAG
ATTCGGATTTGAAACTTTTTTGAGACTGAAAACTAACGCTGCGAATAAGT
TAGCTAGCTTTCAACTCTGCACGGAAGAAGAGCCAGACGGTTCCTTTTGC
TGTGTTTTTATATGTCTTCACCAAATAATAATAATAATAATAACCTTCTC
AACACAAGGTAGTAACAAACTGTACGTGTCCAGCGGGGTTGCTCTTATGA
ACTGCTTTTAGTGCTATCGTAATGATCGCGTTATCAGTGAGTAGATACAC
AGTCTGCCTGTCTCATGAATCTCGTAGTAATGGTCACAGCTTGGATGACA
GTTTTTTATTTAGCAAATAAAAGCACATTCCTTCATAGAACATTCCACAC
ATACAACGACTGATATATAGTGTGAAAGGATTGATTGGGCTATGGTACGC
CCCGTAACATCAAAATCCCCACCCCCGGTGAAGAAGGGCGCAATGTACCG
CATTCATTCATGCATCCACACGGTCCGAAAACATGAACTTTAAACAGGAT
CGTAGAGACAGGGAGCTTCGGTTTTCGACGAGGGCTAAGGGGTCTCAAAT
TAGTCGTTTCAGGCAACCAATTAGTCACTATGTATGGTACCTTCAACGTT
TGGCCAGCCTTCATTCCCAGTAGTAGAAAAATGCGCGGAGGTGCGCTCAT
GCTCCAAAATCGAACAGGTGGAGAGTCTTGAGTTATCACTTCAAATGGGT
TTTGTAAAGCGCCAAGTAGTACTCATATTGCGCTGTCGTGGTTCCCAAAA
TTCGCGACAACCTTACATCTTCATCGACCTTTATCGGAGGAAATTCGCGA
CAAGTTTCATTGGCCTTCGTCGACCGTTATCCGAAGAAATTCGCGGCAAC
CTTCATTGACCTTCATCCGAGGTATACTAATGCTGAGATTATGTGGAACT
TTTTTCTTTTTGTTTTTCGCCAATCTGTACGCGGCTTCCACGCAGGGTCT
CCGCTGAAGATTCTCAAGATCCCGAAGACGCGGAAACGTCCGGTGTAAGA
GTGCTTCTGGCGTCGCCGGATGCCCTCGAGGCGAAGGACAAGGAAGTGTG
GTGTACCGTGGAAGAGCTGCTGGCCATGCTTCTCGTCGGCGTAAAGGTGG
GTGGGTGGGTGGGGGGGTATGCTTTGCTTAGGGCCTCTTGCCTTTATTCT
TATTATTTTTTTGTTAGAGTAGGTGGTGTGCGAAGGACCTTCCAAAATGA
AACGAAAAGGAAGAACGAAAAAAAGAGTTTTCTGTGGAAGGTGGGTATAG
GTTGTGAAATCGAGCAGTAGGATGTTTTTTTTCTTTTTTTTTCTTGTTTT
TTTTCGCAAAATTTGATCTGGTCGTATGTAGCTCGAGAGAAAGAGAGAGA
GCTGCTCGTTGTAGACCTCCTCCGACGTTTCGTTACGAAAGGATTTCCTT
TTTAAAATCCGTAATTCGCGTGCGGGATACGGTTAGTCACTGGTTTTGAA
AAAAGAATTCGATTTGTAACCGAATGTCGGTGTTAGATGGACTGGGGTCC
CGGACAAGGAGCTCAGTGTTATCTATATACGCATCGCCAAGTTGAATTTT
GCACAATAAAAAAGGATTCGGTTTGCGTAAATACTGTGGTGGTAGTAGTA
GTAGTAGTAGTGCCTACCCGCTAACCAACTTGAGCACGGAAATAAAGTCG
TGAAAATGACTGATGGATATATATGTCTGCCCCGTGTTTGTAGGTGTGAG
ATGGATGGAACACGTTGTTGACACTTACGAGCCCTGTACACAAACACACG
TGCATTTCCTTTTAGGGAGCAGAGTTGTTTATTCCTCTGCGGGGTAGGCG
CCACCCCGGTTCGGCCGAACCAAGTAGGCGGTGTGGGGGTTTCACCCACT
AAAAGACCTCTGACTACACTTCCAGTCATGCTCGGTACACGAGCTACCCT
ACCCGTTCGGGCGTAGGTCCGTGGCAGAAAATGGAATTCTGACTTTTTCT
TGTTTGTTTTCTCGGAACATGTTTTTCTTGTAACAAAAGCTACATCGAGG
AAGACAATTGGAAACGATGGTTAATCGACGATAGCGTCTCAGCGAGTCCT
TCGATGAAGAAACGGATTGCTGCGTTAGATTTCTTGGTAAAAGTTGGACA
AATATATATATATATATATATATATATGTCTTTTTCCAGCAATCCCAAAT
GTTGTCGTCCGCATCATGTTTTTCTTCCTTTTCCCCTTTTCTTTCGACAT
GTTAATCTGTTTTTTCTTCCATGTGTTTTATGTCTTCTTTTTTTTTCTCC
TGTATTTTTTGCTAATAATCTTGACAGGCTCAGATGGAGGAGGCCCACGG
GGTAACGGTGTTCACCTGTAACCTCAGCGCGCCATCGTGCCTGGGCGACG
TGCACCGCGTGGCGCTTCAGCGCTCTGTGTTTCTGGCGGGCATGGCACCC
GGGCGGTTCGTTGGCGCGCCTCTAGCGGCCACGGTCGGCTACCTATGGGG
AAGGTGACGAGCAGCGAAGTCTAAGGTGTAGCTCTAGCGACCACTTTTTC
GGCGGAAGTGATGGAAGTCTGGAAATGGAGAAATTTTGACTGAAACGTAA
CGAAAGTCAAAATTCCCAGAATTAGGAAATTTCATATCTCACCGAATTGC
AGAAATTGGGCCATGTCACGTGGCCATGATATATGTGAACATAATCGACT
CTTCTTTTTTTCACGTCTAATTTTTTTATCCTCTTTTGACGGCTCAAACC
CCAAATTCCCCCAGATTTCCAGATAGTTTTTTTTTTTTTTTTCCGCCTAA
GAAATTGTCGCTTGACTATGTTTGACCCTTATGTAGCCGGGCGTCTCACG
GAACGACGTAATCGCGTAACCCTCCCGGGATTTTGGAAGACAAGCTCCCG
TCCTGTCCTGTCCCCTCTCATCGATTTGAAACCCGGTCCTGTCCCGTTCC
ATATCCTCACGGGACCGACTCGCCTCGTCTGGTGAGTTATCGGATCCCAT
ATATGAACCAAATATACATCTTGTTCAGTCCTATCCTGTCCCACCGTTTT
GAACCGGGTCCCATCCCGTTACATATTCCCATGCGACCGGCGCGCCTCAT
CTCGTGAGTCACCGGGTTCTATACATTGGTCAGGTGTACATCTTGTAGAC
TCGTGTCCGGCCTCGTGCCGTGGAAATGTTATGCTCATTGTCCCGTCTCG
TGGTCCCTTGATCCTGTCTGTGACAAGCCCTTCTGTTTGGGGCTTGGGGT
AGTGTTGGAGTTGGAGTTGGAATTGGAGATGCCCCCCCATTGTAGCTATG
GTCGGCTGTGTGCATGTGCAAGTTTTTGTTGTGCGTATGTCTACCGCTTA
GGGGCACGGTACGATCACGTGTAGTAGGTTTTGGGTGTTCACGGGCTCTT
GTCTTTTATTCGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTTTCGGG
CGTAATTTTTTGTTTTCTAGTTCTTTTTATTGGCCATGCTATCATTGGAC
TACTTTTGCCCCATGCATTAATGCATTCCGTCTCTTTTGTACATAGTGAA
TATCCTTGTTTCCTTTCCTTTCTGTTTTTCTCTTGCTTGTTTTTTTACCA
CTCGTCCGCTCGTCTGCTCATCCGCCCGTCCATCAGACCCACCCCGGAGC
TGAAACAACCTGAAGATCTCATCGTCTCGGTCGGCATGGGTGCTAGCTTC
CTCGACGTTGCCGTGATGAGCGCCAAACGTGAGAAGTCGTCATCCTCGAG
CAGTGGTACTGGTGCTATTGCTACTGCTGACGCATTAAACAAGAAAAAGA
AAGCTAAAGGTGTGTGTGTATCCGTCGTCTAGTCGGACGTTATGTGGCGG
TATGGTGAGTCATAGTTTGAAGTTAAAACGTATCCTGGTTTGTGGAGGGC
ACTTGAAGTGAAGTGAAGTGAAGTGCCATGAATTAACCCTTTTAGTGTCG
ACTCTCCGTCTAACTTGATTACCTGTGTAATTTTTTGCCTACAAAACGGT
GGGAAAGACCGCCAATGGAGAGTCGGGCTCCGGTAGGGGGTGGGTAAATT
GAGCCAATTTGTCTCTTTTTTTTTTTTTACGACTTGCGAAGCGGCTAGGT
AAAATACATGCCCCCCCCCCCATTGAAGAATATGACCATTCTAAATCGTG
CATTGTGCACTCTTGGGGTGCGTGAACGTCAGGCCATTGAAGAGGTTTTC
ATTTGTACCAAACTTCCCAAACAACTCCAAAATAATACCCCCCCCCCCCC
CCCATATACTTTTCAATTTGATTATATATATATATATCATGGTGTGGAAA
AACATGCCAATTCCCGCTCTCGTCTATTACTGCCCTTCACGTGTGTGTGG
CAGAAGCGTTACAGATATGATTCAAAATCTACTCTATTATTTGCTCCTTG
TCAATTTTGCGTATGGGTGAGGTCACATTTTTTTTTTTTTTTTGACATTG
AATATTGCCTGCTTAAAGCAGGTGGTGGCGGCAAAGTAAAAGAAGGGGCT
GGCGATGCCATGCAATATCAAGTCAAGGCATCGTCCGGGGACCCTGCATG
CGGGGGATTAGACATGGACTACAAAGTCGCGCGTGCGCTTCTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig11982:1367..7559+ >mRNA_H-paniculata_contig11982.1255.1 ID=mRNA_H-paniculata_contig11982.1255.1|Name=mRNA_H-paniculata_contig11982.1255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig11982:1367..7559+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGTGGCTGAAGCAAAGGTCGGCAGGTGTGCCGGGATCGTCGTCCCCTCC GAAAGGCGTTACGCTATTTCATAACGCTGACACTAGCGTAGCCGGCGGCG GCGGCGGCAAAAAGGGTGATGGAGTTGAACATGGAGGTGATGGCAAGTGT ATCGTGGTGTGGCCTCTCCGGCTGCTGGCCTTGCGGGGCAAGGGCGATGA GGCGAGGGAGCGGGTTCAGTCGTCTCTGCACTATGAGATCAAAGGTGGCT GAAGCAAAGGTCGGCAGGTGTGCCGGGATCGTCGTCCCCTCCGAAAGGCG TTACGCTATTTCATAACGCTGACACTAGCGTAGCCGGCGGCGGCGGCGGC AAAAAGGGTGATGGAGTTGAACATGGAGGTGATGGCAAGTGTATCGTGGT GTGGCCTCTCCGGCTGCTGGCCTTGCGGGGCAAGGGCGATGAGGCGAGGG AGCGGGTTCAGTCGTCTCTGCACTATGAGATCAAGGTCTCCGCTGAAGAT TCTCAAGATCCCGAAGACGCGGAAACGTCCGGTGTAAGAGTGCTTCTGGC GTCGCCGGATGCCCTCGAGGCGAAGGACAAGGAAGTGTGGTGTACCGTGG AAGAGCTGCTGGCCATGCTTCTCGTCGGCGTAAAGGGTCTCCGCTGAAGA TTCTCAAGATCCCGAAGACGCGGAAACGTCCGGTGTAAGAGTGCTTCTGG CGTCGCCGGATGCCCTCGAGGCGAAGGACAAGGAAGTGTGGTGTACCGTG GAAGAGCTGCTGGCCATGCTTCTCGTCGGCGTAAAGGCTCAGATGGAGGA GGCCCACGGGGTAACGGTGTTCACCTGTAACCTCAGCGCGCCATCGTGCC TGGGCGACGTGCACCGCGTGGCGCTTCAGCGCTCTGTGTTTCTGGCGGGC ATGGCACCCGGGCGGTTCGTTGGCGCGCCTCTAGCGGCCACGGTCGGCTA CCTATGGGGAAGGCTCAGATGGAGGAGGCCCACGGGGTAACGGTGTTCAC CTGTAACCTCAGCGCGCCATCGTGCCTGGGCGACGTGCACCGCGTGGCGC TTCAGCGCTCTGTGTTTCTGGCGGGCATGGCACCCGGGCGGTTCGTTGGC GCGCCTCTAGCGGCCACGGTCGGCTACCTATGGGGAAGACCCACCCCGGA GCTGAAACAACCTGAAGATCTCATCGTCTCGGTCGGCATGGGTGCTAGCT TCCTCGACGTTGCCGTGATGAGCGCCAAACGTGAGAAGTCGTCATCCTCG AGCAGTGGTACTGGTGCTATTGCTACTGCTGACGCATTAAACAAGAAAAA GAAAGCTAAAGACCCACCCCGGAGCTGAAACAACCTGAAGATCTCATCGT CTCGGTCGGCATGGGTGCTAGCTTCCTCGACGTTGCCGTGATGAGCGCCA AACGTGAGAAGTCGTCATCCTCGAGCAGTGGTACTGGTGCTATTGCTACT GCTGACGCATTAAACAAGAAAAAGAAAGCTAAAGCAGGTGGTGGCGGCAA AGTAAAAGAAGGGGCTGGCGATGCCATGCAATATCAAGTCAAGGCATCGT CCGGGGACCCTGCATGCGGGGGATTAGACATGGACTACAAAGTCGCGCGT GCGCTTCTGCAGGTGGTGGCGGCAAAGTAAAAGAAGGGGCTGGCGATGCC ATGCAATATCAAGTCAAGGCATCGTCCGGGGACCCTGCATGCGGGGGATT AGACATGGACTACAAAGTCGCGCGTGCGCTTCTG back to top
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