mRNA_H-paniculata_contig11614.1042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11614.1042.1
Unique NamemRNA_H-paniculata_contig11614.1042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A7S2WN64_9STRA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN64_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.090e-18
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    4 DEGHLAMTCSALATLSTLGDDLAS--TCRLLR-VRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERC 252
            D GH+AMT +ALA L TLGDDLA   T  +++ V  +     SF A+LD   CD+R+ YCA A+S+MLGDWSGVN+ KA+ ++ +C
Sbjct:  115 DSGHIAMTYTALAVLLTLGDDLARVHTADIIQAVAALQREDGSFTATLDGSECDMRYLYCACAISTMLGDWSGVNKDKAVEFIRQC 200          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A6H5KFN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.320e-17
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 DEGHLAMTCSALATLSTLGDDLA----STCRLLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255
            DEG+LA T SALATL  L  DL     S   +  +  +     SF+AS  + TCD+RFTYCA AVS+MLG+WSGV+R KA  Y+ERC+
Sbjct:  134 DEGNLAATYSALATLVALDVDLTTGVDSNAIVRALGSLQQEDGSFKASASDSTCDVRFTYCACAVSTMLGNWSGVDRRKAAEYVERCY 221          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: D7G4Q8_ECTSI (Geranylgeranyltransferase type 1 beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 4.740e-16
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 EGHLAMTCSALATLSTLGDDLA----STCRLLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255
            EG+LA T SALATL  L  DL     S   +  +  +     SF+AS  + TCD+RFTYCA AVS++LG+WSGV+R KA  Y+ERC+
Sbjct:  101 EGNLAATYSALATLVALDVDLTTGVDSDAIVRALGSLQREDGSFKASASDSTCDVRFTYCACAVSTILGNWSGVDRRKAAEYVERCY 187          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A1M2V3P2_TRAPU (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3P2_TRAPU)

HSP 1 Score: 68.9 bits (167), Expect = 1.070e-12
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    4 DEGHLAMTCSALATLSTLGDDLASTCR--LLRVRPVCHSPK-SFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255
            D  HL MT +AL++LS L DD +   R  ++R    C  P  SF A  +    DLR  YCA+ +SSML DWSG+   +A+AY+ +C+
Sbjct:   14 DLPHLVMTYTALSSLSILRDDFSKLDRAGIIRFLTACQQPDGSFSALPNGGESDLRMLYCAFVISSMLDDWSGIAIDRAVAYIRKCY 100          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A6B2L8R2_9EUKA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8R2_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 2.880e-12
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    4 DEGHLAMTCSALATLSTLGDDLASTCR--LLRVRPVCHSPK-SFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYM 243
            D+GH+AMT  ALA L  LGDD +   +  ++   P    P  SF    D   CD+R+ YCA AVS ML DWSG ++ KA  Y+
Sbjct:   97 DQGHIAMTYVALALLLILGDDFSRVDKKAIIEALPYLQQPSGSFSPVADESECDMRYVYCAAAVSYMLNDWSGFDKDKATQYI 179          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: M2RMF1_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2RMF1_CERS8)

HSP 1 Score: 70.1 bits (170), Expect = 3.060e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 DEGHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERC 252
            D  HL MT +AL +L+ L DD +   R   +  +R   H   SF A  D    DLR  YCA+A+SSML DWSG++  +A+AY++RC
Sbjct:   99 DAPHLIMTYAALLSLAILRDDCSKLNRTGIVQLIRACQHEDGSFSALPDGGEADLRSVYCAFALSSMLDDWSGIDIDRAVAYIQRC 184          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: R7T1B5_DICSQ (Terpenoid cyclases/Protein prenyltransferase n=3 Tax=Dichomitus squalens TaxID=114155 RepID=R7T1B5_DICSQ)

HSP 1 Score: 70.1 bits (170), Expect = 3.070e-12
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   10 GHLAMTCSALATLSTLGDDLASTCR--LLRVRPVCHSPK-SFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255
            GHL MT +AL  LS L DD ++  R  +L +   C  P  SF A       DLR TYCA+ +SS+L DWSG++   A+AY+++C+
Sbjct:  101 GHLVMTYTALLCLSILRDDFSNLDRRGILHLLRSCQQPDGSFTALPTGGESDLRMTYCAFVISSLLDDWSGIDLDHALAYIDKCY 185          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: L7M260_RHIPC (Geranylgeranyl transferase type-1 subunit beta n=4 Tax=Rhipicephalinae TaxID=426437 RepID=L7M260_RHIPC)

HSP 1 Score: 69.7 bits (169), Expect = 3.780e-12
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   10 GHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255
            GH+AMT +ALATL  LGDDL+   +   +  ++ +     SF A +     D+RF YCA A+ SML DWSG ++ KA+++++ C+
Sbjct:   74 GHIAMTYTALATLIILGDDLSRVDKQAIMQGLKALQQESGSFMALIHGSEDDMRFVYCAAAICSMLHDWSGFDKEKAVSFIQGCY 158          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A6M2CV33_RHIMP (Geranylgeranyl transferase type-1 subunit beta n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CV33_RHIMP)

HSP 1 Score: 68.6 bits (166), Expect = 9.740e-12
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   10 GHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255
            GH+AMT +AL TL  LGDDL+   R   +  ++ +     SF A +     D+RF YCA A+ S+L DWSG ++ KA+++++ C+
Sbjct:   72 GHIAMTYTALTTLIILGDDLSRVDRQAIMQGLKALQQESGSFMALIHGSEDDMRFVYCAAAICSLLHDWSGFDKEKAVSFIQACY 156          
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: UPI000625C54A (geranylgeranyl transferase type-1 subunit beta n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000625C54A)

HSP 1 Score: 67.8 bits (164), Expect = 1.940e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   10 GHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMER 249
            GHL MT   LA+L TLGDDL+   +   +  VR   +   SF A+L     D+RF YCA  +SS+L DWSG+++ KA+ Y+ +
Sbjct:   94 GHLTMTYLGLASLLTLGDDLSRVDKKSIIEGVRACQNDDGSFTATLTGSESDMRFIYCACCISSILDDWSGIDKHKAIDYITK 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WN64_9STRA1.090e-1851.16Geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A6H5KFN4_9PHAE2.320e-1752.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Q8_ECTSI4.740e-1650.57Geranylgeranyltransferase type 1 beta n=1 Tax=Ecto... [more]
A0A1M2V3P2_TRAPU1.070e-1242.53Geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A6B2L8R2_9EUKA2.880e-1244.58Geranylgeranyl transferase type-1 subunit beta n=1... [more]
M2RMF1_CERS83.060e-1244.19Uncharacterized protein n=1 Tax=Ceriporiopsis subv... [more]
R7T1B5_DICSQ3.070e-1243.53Terpenoid cyclases/Protein prenyltransferase n=3 T... [more]
L7M260_RHIPC3.780e-1241.18Geranylgeranyl transferase type-1 subunit beta n=4... [more]
A0A6M2CV33_RHIMP9.740e-1240.00Geranylgeranyl transferase type-1 subunit beta n=2... [more]
UPI000625C54A1.940e-1143.37geranylgeranyl transferase type-1 subunit beta n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11614contigH-paniculata_contig11614:3619..4397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog2880.D7G4Q8
Preferred namePGGT1B
KEGG koko:K11713
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004662,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005953,GO:0005968,GO:0006464,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007275,GO:0007507,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008318,GO:0009414,GO:0009415,GO:0009555,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009787,GO:0009788,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018344,GO:0019222,GO:0019538,GO:0019725,GO:0022622,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030010,GO:0032501,GO:0032502,GO:0032507,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0035050,GO:0035295,GO:0035556,GO:0036211,GO:0042127,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0045787,GO:0046872,GO:0046914,GO:0048229,GO:0048364,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0051716,GO:0051726,GO:0051769,GO:0051771,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060429,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072359,GO:0072503,GO:0072507,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0097305,GO:0097354,GO:0098771,GO:0099402,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0367@2759
EC2.5.1.59
COG Functional cat.O
BiGG ReactioniND750.YGL155W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006
Exons2
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928871.846391-CDS-H-paniculata_contig11614:3618..38021622928871.846391-CDS-H-paniculata_contig11614:3618..3802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11614 3619..3802 -
1691480651.657676-CDS-H-paniculata_contig11614:3618..38021691480651.657676-CDS-H-paniculata_contig11614:3618..3802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11614 3619..3802 -
1622928871.8633013-CDS-H-paniculata_contig11614:4326..43971622928871.8633013-CDS-H-paniculata_contig11614:4326..4397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11614 4327..4397 -
1691480651.6755786-CDS-H-paniculata_contig11614:4326..43971691480651.6755786-CDS-H-paniculata_contig11614:4326..4397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11614 4327..4397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11614.1042.1prot_H-paniculata_contig11614.1042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11614 3619..4397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11614.1042.1

>prot_H-paniculata_contig11614.1042.1 ID=prot_H-paniculata_contig11614.1042.1|Name=mRNA_H-paniculata_contig11614.1042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MDEGHLAMTCSALATLSTLGDDLASTCRLLRVRPVCHSPKSFRASLDNPT
CDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF
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mRNA from alignment at H-paniculata_contig11614:3619..4397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11614.1042.1 ID=mRNA_H-paniculata_contig11614.1042.1|Name=mRNA_H-paniculata_contig11614.1042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at H-paniculata_contig11614:3619..4397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAAGGACACCTGGCCATGACCTGCTCCGCTTTGGCGACACTGAG CACGCTCGGAGATGATCTAGCGTCTGTTGACAGTGAAGCAAGCCACTGTG CGCGCCATCACTGCACTGCAGCGAGAAGACGAAAGGTGCTATTGGAGGGC AAGAGAGGGTAAAGAAACAGGGCAACAAGAGTCTTTGGCTTCGTCTTGGT GCGAACATCGATACTGTAAATGCGGTCGTTTTGAACATCGTCACGGGTGG CGGCGGTGATGGCAAGTTGCAATGGCCATCCTATTTTCATTTTCAATTTA GTGTAAAGAACTTGAAGGCCAACTGATTTCGTTTTTTGATGGATCGACAA GTTTGGAAATATTCCAAATTTGATGCACGGGCAAGCTGAGGACTTTCCTG ACTTCCTATCAGCAAGCCCAAAGAGTATTACCATCTTGTGGTTGCCTGAC CGGTAACCACGATTTCCGCGATAATCACCCCTTCGTAGGACTGAAATTAA AACTTACGCATGGGCACGAGTTCGATTTGTATTCAGACGCAAAAAAGTCG ACCTCGAGGCACTGGATACTTGTCTTGTCTTGGAATTTCTCAAAGCTCCA CCTGCCGCCTGCTGCGTGTCCGGCCAGTGTGCCACTCCCCGAAAAGCTTT CGAGCTTCGTTGGACAACCCGACATGTGACCTGCGTTTCACGTATTGTGC TTGGGCGGTGTCAAGCATGCTAGGTGATTGGAGTGGAGTAAACCGACCAA AGGCCATGGCTTATATGGAACGATGCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11614:3619..4397-

>mRNA_H-paniculata_contig11614.1042.1 ID=mRNA_H-paniculata_contig11614.1042.1|Name=mRNA_H-paniculata_contig11614.1042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig11614:3619..4397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAAGGACACCTGGCCATGACCTGCTCCGCTTTGGCGACACTGAG
CACGCTCGGAGATGATCTAGCATGGACGAAGGACACCTGGCCATGACCTG
CTCCGCTTTGGCGACACTGAGCACGCTCGGAGATGATCTAGCCTCCACCT
GCCGCCTGCTGCGTGTCCGGCCAGTGTGCCACTCCCCGAAAAGCTTTCGA
GCTTCGTTGGACAACCCGACATGTGACCTGCGTTTCACGTATTGTGCTTG
GGCGGTGTCAAGCATGCTAGGTGATTGGAGTGGAGTAAACCGACCAAAGG
CCATGGCTTATATGGAACGATGCTTCCTCCACCTGCCGCCTGCTGCGTGT
CCGGCCAGTGTGCCACTCCCCGAAAAGCTTTCGAGCTTCGTTGGACAACC
CGACATGTGACCTGCGTTTCACGTATTGTGCTTGGGCGGTGTCAAGCATG
CTAGGTGATTGGAGTGGAGTAAACCGACCAAAGGCCATGGCTTATATGGA
ACGATGCTTC
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