mRNA_H-paniculata_contig11614.1042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A7S2WN64_9STRA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN64_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.090e-18 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1 Query: 4 DEGHLAMTCSALATLSTLGDDLAS--TCRLLR-VRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERC 252 D GH+AMT +ALA L TLGDDLA T +++ V + SF A+LD CD+R+ YCA A+S+MLGDWSGVN+ KA+ ++ +C Sbjct: 115 DSGHIAMTYTALAVLLTLGDDLARVHTADIIQAVAALQREDGSFTATLDGSECDMRYLYCACAISTMLGDWSGVNKDKAVEFIRQC 200
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A6H5KFN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN4_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.320e-17 Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 4 DEGHLAMTCSALATLSTLGDDLA----STCRLLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255 DEG+LA T SALATL L DL S + + + SF+AS + TCD+RFTYCA AVS+MLG+WSGV+R KA Y+ERC+ Sbjct: 134 DEGNLAATYSALATLVALDVDLTTGVDSNAIVRALGSLQQEDGSFKASASDSTCDVRFTYCACAVSTMLGNWSGVDRRKAAEYVERCY 221
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: D7G4Q8_ECTSI (Geranylgeranyltransferase type 1 beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q8_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 4.740e-16 Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 1 Query: 7 EGHLAMTCSALATLSTLGDDLA----STCRLLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255 EG+LA T SALATL L DL S + + + SF+AS + TCD+RFTYCA AVS++LG+WSGV+R KA Y+ERC+ Sbjct: 101 EGNLAATYSALATLVALDVDLTTGVDSDAIVRALGSLQREDGSFKASASDSTCDVRFTYCACAVSTILGNWSGVDRRKAAEYVERCY 187
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A1M2V3P2_TRAPU (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3P2_TRAPU) HSP 1 Score: 68.9 bits (167), Expect = 1.070e-12 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 4 DEGHLAMTCSALATLSTLGDDLASTCR--LLRVRPVCHSPK-SFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255 D HL MT +AL++LS L DD + R ++R C P SF A + DLR YCA+ +SSML DWSG+ +A+AY+ +C+ Sbjct: 14 DLPHLVMTYTALSSLSILRDDFSKLDRAGIIRFLTACQQPDGSFSALPNGGESDLRMLYCAFVISSMLDDWSGIAIDRAVAYIRKCY 100
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A6B2L8R2_9EUKA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8R2_9EUKA) HSP 1 Score: 70.1 bits (170), Expect = 2.880e-12 Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 4 DEGHLAMTCSALATLSTLGDDLASTCR--LLRVRPVCHSPK-SFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYM 243 D+GH+AMT ALA L LGDD + + ++ P P SF D CD+R+ YCA AVS ML DWSG ++ KA Y+ Sbjct: 97 DQGHIAMTYVALALLLILGDDFSRVDKKAIIEALPYLQQPSGSFSPVADESECDMRYVYCAAAVSYMLNDWSGFDKDKATQYI 179
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: M2RMF1_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2RMF1_CERS8) HSP 1 Score: 70.1 bits (170), Expect = 3.060e-12 Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 4 DEGHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERC 252 D HL MT +AL +L+ L DD + R + +R H SF A D DLR YCA+A+SSML DWSG++ +A+AY++RC Sbjct: 99 DAPHLIMTYAALLSLAILRDDCSKLNRTGIVQLIRACQHEDGSFSALPDGGEADLRSVYCAFALSSMLDDWSGIDIDRAVAYIQRC 184
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: R7T1B5_DICSQ (Terpenoid cyclases/Protein prenyltransferase n=3 Tax=Dichomitus squalens TaxID=114155 RepID=R7T1B5_DICSQ) HSP 1 Score: 70.1 bits (170), Expect = 3.070e-12 Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 10 GHLAMTCSALATLSTLGDDLASTCR--LLRVRPVCHSPK-SFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255 GHL MT +AL LS L DD ++ R +L + C P SF A DLR TYCA+ +SS+L DWSG++ A+AY+++C+ Sbjct: 101 GHLVMTYTALLCLSILRDDFSNLDRRGILHLLRSCQQPDGSFTALPTGGESDLRMTYCAFVISSLLDDWSGIDLDHALAYIDKCY 185
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: L7M260_RHIPC (Geranylgeranyl transferase type-1 subunit beta n=4 Tax=Rhipicephalinae TaxID=426437 RepID=L7M260_RHIPC) HSP 1 Score: 69.7 bits (169), Expect = 3.780e-12 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 10 GHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255 GH+AMT +ALATL LGDDL+ + + ++ + SF A + D+RF YCA A+ SML DWSG ++ KA+++++ C+ Sbjct: 74 GHIAMTYTALATLIILGDDLSRVDKQAIMQGLKALQQESGSFMALIHGSEDDMRFVYCAAAICSMLHDWSGFDKEKAVSFIQGCY 158
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: A0A6M2CV33_RHIMP (Geranylgeranyl transferase type-1 subunit beta n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CV33_RHIMP) HSP 1 Score: 68.6 bits (166), Expect = 9.740e-12 Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 10 GHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMERCF 255 GH+AMT +AL TL LGDDL+ R + ++ + SF A + D+RF YCA A+ S+L DWSG ++ KA+++++ C+ Sbjct: 72 GHIAMTYTALTTLIILGDDLSRVDRQAIMQGLKALQQESGSFMALIHGSEDDMRFVYCAAAICSLLHDWSGFDKEKAVSFIQACY 156
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Match: UPI000625C54A (geranylgeranyl transferase type-1 subunit beta n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000625C54A) HSP 1 Score: 67.8 bits (164), Expect = 1.940e-11 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 10 GHLAMTCSALATLSTLGDDLASTCR---LLRVRPVCHSPKSFRASLDNPTCDLRFTYCAWAVSSMLGDWSGVNRPKAMAYMER 249 GHL MT LA+L TLGDDL+ + + VR + SF A+L D+RF YCA +SS+L DWSG+++ KA+ Y+ + Sbjct: 94 GHLTMTYLGLASLLTLGDDLSRVDKKSIIEGVRACQNDDGSFTATLTGSESDMRFIYCACCISSILDDWSGIDKHKAIDYITK 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11614.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11614.1042.1 >prot_H-paniculata_contig11614.1042.1 ID=prot_H-paniculata_contig11614.1042.1|Name=mRNA_H-paniculata_contig11614.1042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp MDEGHLAMTCSALATLSTLGDDLASTCRLLRVRPVCHSPKSFRASLDNPTback to top mRNA from alignment at H-paniculata_contig11614:3619..4397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11614.1042.1 ID=mRNA_H-paniculata_contig11614.1042.1|Name=mRNA_H-paniculata_contig11614.1042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at H-paniculata_contig11614:3619..4397- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11614:3619..4397- >mRNA_H-paniculata_contig11614.1042.1 ID=mRNA_H-paniculata_contig11614.1042.1|Name=mRNA_H-paniculata_contig11614.1042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig11614:3619..4397- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |