mRNA_H-paniculata_contig11307.839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11307.839.1
Unique NamemRNA_H-paniculata_contig11307.839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11307.839.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.970e-23
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:   19 ETGIHQRREVRLKVLSQSVGRWSGPLPLASGLVRRAIEHGDVFLVVEESVCVANASWNSIWLETMPHKHVSSDTA 243
            E+G    R V L    +SVGRWSGPLP+ASGLV+RA+E GD+FLV+E +V VAN SW+SIW ETMPHKHVSS +A
Sbjct: 2260 ESGDAGARSVTLAGDLESVGRWSGPLPMASGLVKRAVERGDIFLVIESTVYVANVSWSSIWQETMPHKHVSSSSA 2334
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BLAST of mRNA_H-paniculata_contig11307.839.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.830e-14
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   67 QSVGRWSGPLPLASGLVRRAIEHGDVFLVVEESVCVANASWNSIWLETM 213
            +SVGRWSGPLP+ASGLV+RA+E GD+FLV+E +V VAN SW+SI  E +
Sbjct: 5244 ESVGRWSGPLPMASGLVKRAVERGDIFLVIESTVYVANVSWSSILQEAV 5292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11307.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KK33_9PHAE1.970e-2365.33C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LEV4_ECTSI5.830e-1467.35C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11307contigH-paniculata_contig11307:3337..4213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D8LEV4
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size244
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11307.839.1prot_H-paniculata_contig11307.839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11307 3337..4213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928838.9311445-CDS-H-paniculata_contig11307:3336..34011622928838.9311445-CDS-H-paniculata_contig11307:3336..3401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 3337..3401 +
1691480639.7792754-CDS-H-paniculata_contig11307:3336..34011691480639.7792754-CDS-H-paniculata_contig11307:3336..3401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 3337..3401 +
1622928838.9479294-CDS-H-paniculata_contig11307:3783..39251622928838.9479294-CDS-H-paniculata_contig11307:3783..3925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 3784..3925 +
1691480639.7944648-CDS-H-paniculata_contig11307:3783..39251691480639.7944648-CDS-H-paniculata_contig11307:3783..3925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 3784..3925 +
1622928838.9670749-CDS-H-paniculata_contig11307:4177..42131622928838.9670749-CDS-H-paniculata_contig11307:4177..4213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 4178..4213 +
1691480639.8018918-CDS-H-paniculata_contig11307:4177..42131691480639.8018918-CDS-H-paniculata_contig11307:4177..4213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11307 4178..4213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11307.839.1

>prot_H-paniculata_contig11307.839.1 ID=prot_H-paniculata_contig11307.839.1|Name=mRNA_H-paniculata_contig11307.839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MAIRRIETGIHQRREVRLKVLSQSVGRWSGPLPLASGLVRRAIEHGDVFL
VVEESVCVANASWNSIWLETMPHKHVSSDTA
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mRNA from alignment at H-paniculata_contig11307:3337..4213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11307.839.1 ID=mRNA_H-paniculata_contig11307.839.1|Name=mRNA_H-paniculata_contig11307.839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=877bp|location=Sequence derived from alignment at H-paniculata_contig11307:3337..4213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATCAGGCGTATCGAGACGGGGATTCATCAAAGACGGGAAGTTCG
ATTGAAGGTGTTGAGGTACGAGTGTCTCACGCGTACTGTCAGATCTAGTG
AGAGTTTGGGGCTGAAGAGGGATGTTCTGAGTCGACAACTGCGTTCTCGT
GAATCGATTTAATGTAGTCGGTGCTGAGGCACTATGCGGTCATATAACCA
AAAGATAGTAACACTCACTAACGTGTGTTTTATGCATAATCAAGGCACCT
CTCCAGGCCAGTTGATGTTCATCGATTTTACGAGTGTGGTGAGTTGTGTG
AAACAAGATCCGCAAAAGATTCAAAGCAAATTATGATATCAACCTAGCGA
GTAAGTGTTGCAGTAACCTGGATCCCTCTGTCCGCAACAGCCAAGAGTAT
CGTCGCATAACAGTGTTCCTAACCTGCTGCGCTTGCATCATGCCAAGTCA
GTCTGTCGGACGGTGGTCCGGGCCTCTACCGCTAGCCAGCGGGTTAGTGA
GAAGAGCGATTGAACACGGCGACGTGTTCCTTGTGGTTGAGGAGTCAGTC
TGCGTTGCAAATGCCTCGTGGAATTCCATCTGGCTCGAGGTGAGTGCTTC
ACGGTTGGCAAGCAATAACCCGGGCATGTAAATTCTAGGGTAAAACCAAT
AGCTGAGGAAATTCTAGGGCGGGTAGAGAAGTGTCCACATATGTATGTCA
GAAATATCCTATTTAACCCGTTGAACACGTTGAGAAATAGCCACGCTTTC
AAAATTTACAGTTACCTGAAAAAACGGTATATCGCTCAATGTATTGGCCC
TGAATCCTCAACCGCCCTCCACCCACCTCCCTTGCCTAAAGACTATGCCT
CATAAGCATGTCTCGTCTGACACCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig11307:3337..4213+

>mRNA_H-paniculata_contig11307.839.1 ID=mRNA_H-paniculata_contig11307.839.1|Name=mRNA_H-paniculata_contig11307.839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig11307:3337..4213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATCAGGCGTATCGAGACGGGGATTCATCAAAGACGGGAAGTTCG
ATTGAAGGTGTTGAGATGGCGATCAGGCGTATCGAGACGGGGATTCATCA
AAGACGGGAAGTTCGATTGAAGGTGTTGAGTCAGTCTGTCGGACGGTGGT
CCGGGCCTCTACCGCTAGCCAGCGGGTTAGTGAGAAGAGCGATTGAACAC
GGCGACGTGTTCCTTGTGGTTGAGGAGTCAGTCTGCGTTGCAAATGCCTC
GTGGAATTCCATCTGGCTCGAGTCAGTCTGTCGGACGGTGGTCCGGGCCT
CTACCGCTAGCCAGCGGGTTAGTGAGAAGAGCGATTGAACACGGCGACGT
GTTCCTTGTGGTTGAGGAGTCAGTCTGCGTTGCAAATGCCTCGTGGAATT
CCATCTGGCTCGAGACTATGCCTCATAAGCATGTCTCGTCTGACACCGCC
ACTATGCCTCATAAGCATGTCTCGTCTGACACCGCC
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