Homology
BLAST of mRNA_H-paniculata_contig11246.797.1 vs. uniprot
Match:
A0A6H5KZP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP9_9PHAE)
HSP 1 Score: 149 bits (376), Expect = 5.630e-38
Identity = 75/108 (69.44%), Postives = 91/108 (84.26%), Query Frame = 1
Query: 1 AVSRDLDNKDFTDHLERELAQHFALAALQAEKMGIGGLRYTVTFYPQACLVHVNLAPLVVTLVHRDGVGINP---NYGKTLEMIPELSAALEPLRAQVEQAYREDLAA 315
A+ +D++NK FTDHLERELAQHFALAA+QA+KMG+G LRYTVTFYPQACLVHVNLAPLVVTLVH+DG + N+G L++IPE+S ALEPLR QV +AY E+ +A
Sbjct: 39 ALRKDVENKSFTDHLERELAQHFALAAVQADKMGMGNLRYTVTFYPQACLVHVNLAPLVVTLVHQDGQDDSRDKLNFGDALDLIPEMSDALEPLRKQVLRAYWEENSA 146
BLAST of mRNA_H-paniculata_contig11246.797.1 vs. uniprot
Match:
A0A836CDC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC5_9STRA)
HSP 1 Score: 86.3 bits (212), Expect = 3.600e-16
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 43 LERELAQHFALAALQAEKMGIGGLRYTVTFYPQACLVHVNLAPLVVTLVHRDGVGINPNYGKTLEMIPELSAALEPLRAQVEQAYREDLA 312
+ER L+ + A AA QA+KMG+G L+ T T Y + CLVHV + PLV+T VH + N G TL+++PEL AL+P+RAQV+ Y + A
Sbjct: 38 IERRLSHYCAAAAEQAQKMGLGPLKVTTTLYDKLCLVHVYMLPLVITCVHSP----DSNCGTTLDIVPELREALDPIRAQVQAVYDREFA 123
BLAST of mRNA_H-paniculata_contig11246.797.1 vs. uniprot
Match:
A0A7S2APW0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APW0_9STRA)
HSP 1 Score: 63.9 bits (154), Expect = 3.520e-8
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 46 ERELAQHFALAALQAEKMGIGGLRYTVTFYPQACLVHVNLAPLVVTLVHRDGVGINPNYGKTLEMIPELSAALEPLRA 279
E ++ F++ A+Q EKM +G +R FY L+HVN++PLV+TL+ + G N G L M+P L+ +LEP+ A
Sbjct: 51 ELHMSALFSITAVQIEKMELGAVRSVTAFYQNMMLIHVNISPLVLTLIAKPGA----NAGALLAMVPSLNESLEPISA 124
BLAST of mRNA_H-paniculata_contig11246.797.1 vs. uniprot
Match:
A0A7S2Y003_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y003_9STRA)
HSP 1 Score: 53.9 bits (128), Expect = 8.590e-5
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 37 DHLERELAQHFALA-ALQAEKMGIGGLRYTVTFYPQACLVHVNLAPLVVTLV 189
+ LE LA++FA+A A QA K+G+GGL+ FY LVHVNL+PLV+TLV
Sbjct: 57 EELESGLARYFAMAVADQAGKVGLGGLKTITAFYNTLALVHVNLSPLVLTLV 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11246.797.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 5.63e-38 / Id = 69.44 Expect = 3.60e-16 / Id = 47.78 Expect = 3.52e-8 / Id = 39.74 Expect = 8.59e-5 / Id = 55.77 Sequence A0A6H5KZP9_9PHAE A0A836CDC5_9STRA A0A7S2APW0_9STRA A0A7S2Y003_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description Ragulator complex protein LAMTOR3 Ec32 ortholog Ec-18_001670.1 Exons 3 Model size 3620 Cds size 222 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11246.797.1
>prot_H-paniculata_contig11246.797.1 ID=prot_H-paniculata_contig11246.797.1|Name=mRNA_H-paniculata_contig11246.797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MGIGGLRYTVTFYPQACLVHVNLAPLVVTLVHRDGVGINPNYGKTLEMIP back to top mRNA from alignment at H-paniculata_contig11246:601..7211+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11246.797.1 ID=mRNA_H-paniculata_contig11246.797.1|Name=mRNA_H-paniculata_contig11246.797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6611bp|location=Sequence derived from alignment at H-paniculata_contig11246:601..7211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GCAGTGAGCAGGGATTTGGACAACAAAGATTTTACGGATCACTTGGAGCG
AGAACTAGCGCAGCACTTTGCCTTGGCAGCCTTGCAG GTGTGGAGAGTAA
CCAGTGCGTACTAACGCTGAATTATCGCGGAGGCTCTGTGGAGGAAGCCA
TGGCTCCTCGAAAATGCCAAGGCGTGGCCTTTTGTTCTAATTGTACTCGA
GATTTGATGATAAAAGTCGTGTTCTGTTAGCACGGTCTCGCTTTCTACTG
AACGAATGTATCGAGAATAATGCCCCCCCCCCCCCAGTAGTGAACTGTGT
CACCCGTTCTTGGATCCAATTCTGCTGATGAGTCGTCTAATCACACTGAA
AGATTCGAGGTCAGCTGCATGGTTTGAACATGGGTACATTTGGTGGAGTT
ATGTGAGCTTTTCATATCTACCGACTTGCGTCAAATCAGTCGACTAATGA
AGGGCTTGGGGTGGGGCGTGCGTGGTCGAAATGCATCCGCCCTCCTCCCC
TTCGTGCGTTCAGTCTGTGGATACGACATCCAGCCGCTTGGAGTTGCTGA
GCATACCTTCATTTTGTTGTACTGTTAGAATCTTTTATCTGCTTGTACCT
TCTCCTTCTTCACGTGTTGATTCCAACGTGATTTTTCCAAACCGTTTTTT
TTTCACGTAGATGCGGTTATCCTGGTGAAATTATCCTTGGCGATTGACGA
GTAAGGTTATGTCTCCATGTAACAGTTGTCCATCTCCCCCCATTGTTACC
ACCTGGAGGACCCTTTCCTCCATGCCCTGCATGATCCAAAGTGAGTTGTT
GCGTTTCGCTTCAGATCCCCCTCGTCGAAGTCCTTATAATATTCGTCCCA
TAAGCCTGCGACGTCAAGAGTGTAATTTGTTGCAATGTTCTCAAAATCAA
AAATGTGTTTTTGCGTCGGACCCCTTGGTGTTTTTGGCGTTGATTTTATC
CTTCGCAGCTTTCCTCGTTCCCATCAATTTTGGCAAACGTCCTGCACGCT
GCCTGTTCCTCGTTTCGGTGTGCTGTACCTGGAAATCATCGCCTCCTAAC
GCCTTCAAGACCTGATTGTACCGCTTGAAGATGCCCTGTCACACCCTCTC
TAAAGTTACGCGCGTACGCATCGTATGTTCTCTTTACTCTCCACAAGGTC
GTCGATCGTACTGTAACGCTCCCTCCACACCCTACTTTTAGAAACAAAAG
TCGCTCATGTTGACATCTGGGGATTGCGCAGGCTGAGTTACGAGATTGAC
GTTCCCCCCGTGCTCCTCCCGACCTCGTCGAGCTTCCGCGGCGTGTCTTT
CGCCGTGTGGGGGATCTCTCCGTCCTCCTGTGCGACCACTTTCTCACCCT
CCAACCACGCCATATTTTCCTTTAATGCTGGGAGAAAGAAGTCCTTGTAC
CAGTCCGGATACCACTAGGCGTCAATGGTCACGCCGAACTCGTGTTGCTG
CCCCCGTTCACGCCGGGTCAAATTGCTCTGCCCCTGCTTGAATACGCAAA
CATGTCAGATTCCAATCTTGCCGTCGAATTCGCGGGAAGGATCTGGACGC
GAAACGACGCAGATGAACATCACCTTAGGGATGAGACTCTTGTACTGTGC
TTTGGTGGACCCCACCCTTATTTCCTCCCCGGGAAACATGCGGACACGAT
CCCTGTCGCGAACTAGGTGAAGCCACGCTTCGTCGATGTGGATTGTTTGG
AAACCGCTCCTGAAAGTGATGCAGTTCCTTGCCGCTTGCTCCAGGATGAT
TTCTACCCGATTCTTTCGGTGCGTCGGCAAATAGGATGGGGTAATGCTCT
GTTTCCCCCCCGGTGGCGCCCCTCTTTTTGAGCCGTATGCTGAAGCTTTG
AGCTGCCTGCTACGAGACCAACTTCGGCTAGCTTGGCAGATAGGTGATGG
AGGGTCACGGTTCGATTCGCGGCGTTTACCCTTGGAATCGTAGCGTGCTT
TATCGGTGCGAAGTCCGATGGCCGCCCGCTTCTTGAGGCTGACCTCAGCG
AAAGGGTGTGGCCATGGTCCAGTTGTTCTCGTACATGCATCCAAAGTTGT
CTACGACACTGGTCGCCAACTCCAAGCTGCTCCACCAACTCTGGTCCCAC
GCCTATCGGAAGCCATTTCTTACCGGGAAGTACCGCTAAAGCGTACCCTA
CGGCGAACGCGTTTTGATCTTCGCTCAGCTCGCAATTTTTATCCCGGGCT
GATGGATTCTTTGTAAAAGATGCCGGACTCGCCGGAGTGGTAATGTTGGT
TGTGAAACTCGCGCCGCAGACAGCCTGGAGGCTGCACGAGAGTCGTACAG
CTCTTGGCGAGGTGTGGAAATGTTGTGTGACGATAGGGGGGCGGGGGCGA
GGCACTTTATCGGCCGCCGGGTGCAGCGCAGCCACTGAAAGTGGAGCCGA
GAAGGGCCGTTTTTTTAGTGCCCCTTCTCGCGAATATTTCGGAATTGATG
CCGAACAATGTACGAGAACGAAATATTGATTCTCAAAGTACCTCTATATG
TTCAATTCAAGCCATACATGACCGAAAAACTCTTGGTATTCGTCGAGACA
CGACCTACACAAAATACGAGAAATCATAACGTCGCAGAATTACGGATAGG
AGGGAGTATGTATATCTCTATATATAGATGGTAATATGTATTTGTTCGAA
TGCTTCGCTTGCTGTTTTGTTTCCCATCTGATCTGCAAAAGGCGGAGAAA
ATGGGAATTGGGGGGCTGCGATACACGGTGACATTTTACCCTCAAGCGTG
TCTGGTCCACGTCAACTTGGCACCGCTGGTGGTGACCCTTGTTCACCGAG
ATGGGGTCGGGATAAACCCCAACTACGGCAAGACTTTGGAGATGATCCCG
GAACTCTCGGCGGCGTTGGAACCTCTGAGGGCGCAG GTGATACATGTTAG
AAGTTAGAGGTGATGGGTGCTTTTTTTTTGTAGCGTGGCCCTTTCACCCC
CCTACCTACCCCGGGCCTCTTACAAAACGTGTATGTTGACGGATATCTGT
TCCTTAATCTAGTCGGTTTGTGGATTTTTCAGTTCGCAAACTTGCACCTT
ACCGAATATTCTCATGGTTGATTTTTTTCCGTGACCATTCAACCTCATGT
GTCCAGTGATTTAAATACAAACCATAATTTTTCATGTCAACTGCTATTGC
TGTATGTGATGCTTGATGTAATTTCATAAAATCTCAAGTCAACGTTTTCA
TACAAGTATTATTCATTTGTGTTTGTGCGAATTTATCTCGTATCCCGTTT
CCCGGTGGCTGACCCCAACCCAGGTTGAACAAGCGTATCGGGAAGATTTA
GCCGCATAG GTCCAAGCCGATCGTTCTTGCCCATCATTTTATTTTGTTAT
ATGAGTGCGCTGAGGTGGTGGGTGAGTTTTTTTTTTTTGTTATTTTGTTT
TTCAATTTTTTTCCATCATCTTGTTCGACGCCACCTATTCACGGCGGTTC
GTATGATGTTGGCGTGTCTCTTGTCTAGACACAACCAACAGGCATGATCA
GTATTTCGCGTTGGTTGTGAGACTGTTACGCAATGAGCAATCAGGCTTGG
AAGTTTAGGGTTGTGAAGAATGAGTAAGTATGCGCAGGGGGAAGGGGATT
GTGGTTGTGGAAATAATAAGGCAGTGCAAAAGTGAATGATTTTGTCTTGC
GTTAGATCGTAAGACTTTTTTTTTTTTATTGTTTTTCTACTTTTTCCGCT
TCTCCCTCTCTGCTTTTTGTTGACCTACCCTGAACAAGAGAACCGGGGTA
AGGCTGCTGATGTAACTCATCGTCGGCCCTGTTGAAGCTTTCTTGTTACT
TGTACTTGTATTCTGTTCACCCAAGAAAGAGTTGTAGCATACTCCTGCAG
GACCCTTTTGTACTTTTTGCGTTCGTTTCTTGGAATTTTATCGCTCGACC
TTTCAAAAGCAACGGTGTTTCACGGTCGTATGTGTGTACATGATGCACGG
CGGGAATCAAATCTGACGCGTGTTTTATTTCATAATACCACCATTTTAGG
AAGTTTCTTCTGTGGAGCGTTTTTTTTTGTTTCGGTAGAAGATTGTCGAT
TCCATGTTATGTCTTTTTTTTTCTGTTCTTTGGTTTTGGCTCTCGTGCTT
TCGTATTTTTCCCCTGATGGTTTGCGGTTTTTGACATACCCCCATATAAA
GGAACAAAAAGCCATGAGAGGAATGGGAAAAAGAAAAAAGAAGGAAGAGA
AGCCAAAGACGAGAACCCCCCCCTCCCCGACTTCGCACGAAAAGAGGGAG
GGCTCCGGTGGTGCAGTACGTGGTAGTACAGCAATGACATTGCAGTGTGG
TATCTGTACGTCTCCCAAACATGGGTCGGCTCCTCCGTGGTGTTGTTTTT
GTTTTGTTTTTGGACGGAAGAATAATTTTTAAGTTGCGTCATCAATGTGC
GTGGCGCTTTTTATTTTTGAACAGATTTCTCTCAGCGAGCAAGTACAGTG
AGAGAGAACTAGTGCTGGCATGGCGGTTGGGCCCAGTGTTACCGTGAGTG
TAGCTAGTGCGTTCGGGTCGGTGGGTCTGTCTGGCGGAATCGTGAGTGGG
TCAATGGTCCGCTCGGTCAGACTTCACTTACCACGTGAAGGAAAGCCCTT
GGTGATGTACAAGGGCGTGCACCTACGTACCCTACCCACATTGATTCATG
TCTTTCCCCTTGTCTAAGATTTGACACGGGCAGCGAGTTTACCCTACTTG
CTTGCCCCAATCCTCACGATATTTTAGCGAGCGAGAGGTGAATAATTGTT
AGCTGAACCCTTCTTCACCCCCCTCCCCCTCCCCCCTCCCTATCAGTTTT
GGCACGTCACATGCATGTGTCTGTGTGACAATCTTCGCGCAAGTAGAACA
ATTGGTGGACGTGAGGAAGGTTAGGCTGTTGCTTCGGTGTCAGCTCTTTC
TCTCTCCCTCCGTCTCTTTGCGTGTTTCCTATCTTTTTTGTACTTATGTG
GCTGGTTGCGCTTGGTGCCTTTCATTGTCCAAAGTAGCACATCTCACTCG
GTGGCAATCTCCGCAACGTAACATTGTTGGGAGATCTTAAGTGATAGCAG
TGTGTGGGCTGCAGGACAGCCAATGGCTACCGTTGTGCACTTGCTGTGAG
GTGAAGGGTACGGTGCACTACACCAATTGCGTGCGGGCGCGTAGCGTAGT
GTGCTGTGTAATGGTGTGGTGGTTATTGTTCCTGTTCGCCTGTAAGCGTA
CTGTTTGGAGGGGGCGGAGGGGTTGCCCAGCAAGGTCGATTGGTGACTAT
TTTTTTAGTGTGTACCTCTCCGTTACGTTTACTTGCGGTTGTGATTAGAT
CGGCCGGATGTGATAGAAGTACTGAATACATGTGATGCGATGATGATCGA
GTGAACAATCACAGACATTTTTTTATGACATGAAAACTGCCAAACAAGTA
CTCGTGGTGGCGGGGGTGCTAAAGGCGCAAGGAGGAATCACGGCGTTGTC
AGTTGTGATCAGTTTAGTATGAGGACTATGTGCTGGTTGGGTTGTCATAA
GACTAACTGCAGGCTTGCTGGCGGGGAGGCAGGGGGAAGGAGACTTGGAA
CGCATACACATGAGAACAGGCATGGGATGAAGTGGTCGAGTGTTTAAAGT
CTTGGGTGTGTTGGCGGTGGTTGAACTTTTGGAGTCGCGTCCGGTGGAGC
CCGAAGATGTAACCTCCCCCTCCCCCCCACATGATTCTGTTTGGCCGAAG
ATTATTCTATATTTATTCCTAGGAATGTGTCCTCGAGAATCTTTTCGCGA
GGGTTATGATGGCATTTAGTTGTGCCCTGTCTCTCGTCGTAACCGAACCG
TAGTAGCAGCTAGAGGTAGAGTGGGGCAAGGGATTTGACATCTATCATCT
CCCCACAGGAAAGAACTAATAGTTGCAGCAGGTAATGTGTGTTTCGGTGG
CAGAACAAATTATCAAAAATGAGGGAGACAACCAAGACGCATTTTTTTTT
GTGTTTCGTTGTCTTGTGTTGTTGAGCGTGTTGGGTACCTATCTGTGAAA
TCAAATAAATTAACAGAGCAAGCAGTTCCACCTTTTTCGATTCCTGGTGT
GTGCTCCTTTGCAATATTTTGTCGATGTCTTGAATGTCTGGATCGTTCTT
ACAGTTATATTAGGGGTCAAGGTAAGCGATAATATACTAATAGTTGTAAC
AGCTATACTTATTTGGGCTTGTAATATCTCTTCGCCCTCCTTCGCCTGTC
TCCCTACGATGGCCACTTTCGCATAACTGCCAAACGGGAGAACAATGCTA
CTTATGGGAGAATCGAAAATAGTATTGTCGGAAGCGAAGGTTAATTCAAC
TTAGTTATTGATGGATAAGAAGATTTTCCTTCTTCTCGGCTCGGTTTAAT
TGGACGGTTTTCCGCGGAACGCGTGGAAGATGTGTTTAGTGCTTCGCGCC
GCTGCTGTGACGGAGGAAGCAAAGAACATGTTCCCGTTGCCTTGAGGTCG
CCCCATGTAAAGCGAGGGAGAATCTTGGACGGACAGCTAATAGGAGGAGG
TGATCAGAAACATTTCATCGGGTCTGGTATTGGTGATATCTACTCTACAA
ATGATTTATGGAAAGTAATTTTTACTTATTCTTTTCAACTTTCGTTTGGC
GCGCGGGCGGG back to top Coding sequence (CDS) from alignment at H-paniculata_contig11246:601..7211+
>mRNA_H-paniculata_contig11246.797.1 ID=mRNA_H-paniculata_contig11246.797.1|Name=mRNA_H-paniculata_contig11246.797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig11246:601..7211+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top