mRNA_H-paniculata_contig11234.790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A812XB43_SYMMI (WD40 repeat-containing protein SMU1 (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XB43_SYMMI) HSP 1 Score: 71.6 bits (174), Expect = 1.690e-13 Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDA-VLCGTFSRDGEHLATGS 138 ++VWD DTCRLRKDL YQA+DE MMH++ VLC F+RDGE LATGS Sbjct: 199 IEVWDSDTCRLRKDLDYQARDELMMHEEEPVLCAAFNRDGELLATGS 245
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A7S3Y2P2_HETAK (WD40 repeat-containing protein SMU1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P2_HETAK) HSP 1 Score: 69.3 bits (168), Expect = 4.470e-13 Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATG 135 ++VWD D CRLRKDL YQA+DEFMMH++AVL FSRDGE ATG Sbjct: 63 VEVWDPDGCRLRKDLEYQARDEFMMHEEAVLSCCFSRDGELCATG 107
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: K3WH88_GLOUD (WD40 repeat-containing protein SMU1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH88_GLOUD) HSP 1 Score: 70.5 bits (171), Expect = 5.400e-13 Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDD--AVLCGTFSRDGEHLATGS 138 ++VWD++ C+LRKDL YQAKDEFMMHDD V FSRDGE LATGS Sbjct: 239 VEVWDYEKCKLRKDLEYQAKDEFMMHDDERGVTAQAFSRDGEMLATGS 286
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A813CGR5_9DINO (Smu1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CGR5_9DINO) HSP 1 Score: 67.0 bits (162), Expect = 8.130e-13 Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138 +++WD DT ++R DL YQAKD+FMMH+DA+LC FS+DG+ LA+GS Sbjct: 12 IEIWDPDTLKVRLDLDYQAKDKFMMHNDAILCLAFSKDGDMLASGS 57
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 2.580e-12 Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGT 102 ++VWDFDTCRLRKDLAYQAKDEFMMHD AVLC + Sbjct: 240 VEVWDFDTCRLRKDLAYQAKDEFMMHDKAVLCSS 273
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A7S2WM35_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM35_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.520e-12 Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAK---DEFMMHDDAVLCGTFSRDGEHLATGS 138 ++VWDF+TCRLR+DL YQA + FMMHD AVL TFSRDGE LA+GS Sbjct: 261 VEVWDFETCRLRRDLPYQATPDDERFMMHDKAVLAITFSRDGEMLASGS 309
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A6G0XK62_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK62_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.230e-11 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138 ++ WDFD C L+KDL YQA++EFMMH+D V FSRDGE LAT S Sbjct: 234 VEAWDFDKCALKKDLDYQAREEFMMHEDGVSAQAFSRDGELLATAS 279
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: A0A485LFI5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFI5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.230e-11 Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138 ++ WDFD C L+KDL YQA+DEFMMH+++V FSRDGE LAT S Sbjct: 236 VEAWDFDKCVLKKDLDYQARDEFMMHEESVTAQAFSRDGELLATAS 281
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: UPI000C9D5DF3 (suppressor of mec-8 and unc-52 protein homolog 1-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D5DF3) HSP 1 Score: 62.4 bits (150), Expect = 1.420e-11 Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138 ++VWD+ + +L+KDL YQA + FMMHDD VLC FSRD E +A+GS Sbjct: 28 IEVWDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGS 73
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Match: UPI000B4F04E8 (WD40 repeat-containing protein SMU1 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F04E8) HSP 1 Score: 65.5 bits (158), Expect = 2.600e-11 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 1 LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGS 138 ++VW+F T ++RKDL YQA+D FMM DDAVLC FSRD E LATG+ Sbjct: 238 IEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGA 283 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11234.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11234.790.1 >prot_H-paniculata_contig11234.790.1 ID=prot_H-paniculata_contig11234.790.1|Name=mRNA_H-paniculata_contig11234.790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp LQVWDFDTCRLRKDLAYQAKDEFMMHDDAVLCGTFSRDGEHLATGSback to top mRNA from alignment at H-paniculata_contig11234:7650..7787+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11234.790.1 ID=mRNA_H-paniculata_contig11234.790.1|Name=mRNA_H-paniculata_contig11234.790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig11234:7650..7787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11234:7650..7787+ >mRNA_H-paniculata_contig11234.790.1 ID=mRNA_H-paniculata_contig11234.790.1|Name=mRNA_H-paniculata_contig11234.790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig11234:7650..7787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |