mRNA_H-paniculata_contig11233.789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11233.789.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI) HSP 1 Score: 384 bits (985), Expect = 9.230e-121 Identity = 232/389 (59.64%), Postives = 258/389 (66.32%), Query Frame = 1 Query: 1 TTQMMNVHFWFHALSEIPDIIVWIKNGQHLEEDTSVKLFWEGSFLMAVEFYLAFQANGCLILVVVFSVISGLVSIYFLANREEGVTSIGEVRQGLEWVTMFLWILVCLVMAHLTPPADSLRAKALAELVMVSQSGDGQDGAAASANRTQPVIPAGLEEATNDLALQLAASRRKGSLATGTN----GSPIRPGSRQVSVGGGGKSPVSAGASSGNTTNGYGGLQQTMSNGDDDGGPAPNGMASSSDGDNGNGMLRAGGADKTGGAGSGFVDEDGMGEEGREVKDMESRCCCGCWDSFVFWMDRRNTQNNLPVFRLLYFSSTVVYFAVMLGVAAGGIQRGYATAVVGVSFASVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVR 1155
+ QMMNVHFWFHALSEIPDI+VWIK G+ LEEDTSVKLFWEGSFLMAVEFYLAFQ ILVV+FSV+SG VS+YF+ANRE+GVT +GEVRQGLEW TMFLWI+VCL+MAHLTP S RAKAL MV Q+G G D AA + N GL+EA N+LAL +AA RRKGS A T+ GSP R R+ S GG+ NG + + G+ G M+R + CWDSF FWMD+RNTQNNLPVFRLLYFSSTVVYF VMLGVAAGGI+RGYATAVVGVSFA VCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVR
Sbjct: 432 SNQMMNVHFWFHALSEIPDILVWIKTGETLEEDTSVKLFWEGSFLMAVEFYLAFQ-----ILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWTTMFLWIVVCLLMAHLTPTVGSGRAKALE--AMVIQNGGGTDSAA-TPNMPPTANAPGLDEAANNLALAMAAERRKGSRAGLTSSPSKGSPPRLSGRKPSTPNGGRXXXXXXXXXXXXXXXXXXXXXXX--------XETNGSTALA-GNEGAEMMRVSTPTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVR 803
BLAST of mRNA_H-paniculata_contig11233.789.1 vs. uniprot
Match: A0A6H5K6P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P5_9PHAE) HSP 1 Score: 268 bits (686), Expect = 4.070e-79 Identity = 209/489 (42.74%), Postives = 239/489 (48.88%), Query Frame = 1 Query: 1 TTQMMNVHFWFHALSEIPDIIVWIKNGQHL-------------------------------------EEDTSVKLFWEGSFLMAVEFYLAFQANGCL--------------------------------------------------------ILVVVFSVISGLVSIYFLANREEGVTSIGEVRQGLEWVTMFLWILVCLVMAHLTPPADSLRAKALAELVMVSQSGDGQDGAAASANRTQPVIPAGLEEATNDLALQLAASRRKGSLATGTN----GSPIRPGSRQVSVGGGG--KSPVSAGASSGNTTNGYGGLQQTMSNGDDDGGPAPNGMASSSDGDNGNGMLRAGGADKTGGAGSGFVD--EDGM---GEEGREVKDMESRCCCGCWDSFVFWMDRRNTQNNLPVFRLLYFSSTVVYFAVMLGVAAGGIQRGYATAVVGVSFASVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVR 1155
+ QMMNVHFWFHALSEIPDI+VWIKNG+ L EEDTSVKLFWEGSFLMAVEFYLAFQANGCL ILVV+FSV+SG VS+YF+ANRE+GVT +GEVRQGLEW TMFLWI+VCL+MAHLTP S RAKAL VMVSQ+G G G+AA+ N GL+EA N+LAL +AA RRKGS A TN GSP R R+ S GG + T +NG ++ G+ G M+R + G ED + GE+G + K+ +S RGYATAVVGVSFA VCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVR
Sbjct: 115 SNQMMNVHFWFHALSEIPDILVWIKNGETLQAKHVVFNVLVLVIVWPWVYIAYRRVLTNLRAKYCGHEEDTSVKLFWEGSFLMAVEFYLAFQANGCLTHAPVGEEAICDNIIHSNLISGMNIILIFLVVRVILFKMGDLTITRTLHLELRPYEILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWATMFLWIVVCLLMAHLTPTVGSGRAKALE--VMVSQNGGG-GGSAATPNMPSTANAPGLDEAANNLALAMAAERRKGSRAGLTNSPSKGSPPRLSGRKSSTPNGGPRQXXXXXXXXXXXXXXXXXXTAATETNG-----------STPLAGNEGAEMMRVSTPTREGXXXXXXXXXXEDWVAVDGEDGDDDKEDDS--------------------------------------------------RGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVR 539 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11233.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11233.789.1 >prot_H-paniculata_contig11233.789.1 ID=prot_H-paniculata_contig11233.789.1|Name=mRNA_H-paniculata_contig11233.789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=386bp MMNVHFWFHALSEIPDIIVWIKNGQHLEEDTSVKLFWEGSFLMAVEFYLAback to top mRNA from alignment at H-paniculata_contig11233:469..7941+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11233.789.1 ID=mRNA_H-paniculata_contig11233.789.1|Name=mRNA_H-paniculata_contig11233.789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7473bp|location=Sequence derived from alignment at H-paniculata_contig11233:469..7941+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11233:469..7941+ >mRNA_H-paniculata_contig11233.789.1 ID=mRNA_H-paniculata_contig11233.789.1|Name=mRNA_H-paniculata_contig11233.789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig11233:469..7941+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |