Homology
BLAST of mRNA_H-paniculata_contig11084.704.1 vs. uniprot
Match:
A0A6H5KJG2_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE)
HSP 1 Score: 203 bits (517), Expect = 2.130e-56
Identity = 130/254 (51.18%), Postives = 155/254 (61.02%), Query Frame = 1
Query: 4 DSRDAITLVQVLGGTLEEARAGEISWPDRELVGKWLDRNGKLVPASCSGLCRQLETRLTFSFLPGLSWPG--REAVNAVNAGARPRPGATAAT---AGAIMATSRRNLVGLVPPLDKSTEEALAAAGSAASTGLGTEAFGGGSANAGQVLRSIGRTALEDGNYSSTDDE----------GIARDGFSPGLGSTDVLPSVLEQDTVDVNSLEEADDDFLLCPTPQGIKSYCIIHRTSSRIRTYFRLFLQEQRPYA 720
+SRDA L L TLE+ARAG++SW DR+ + WL +N K +P C GLC +LE RL+FSFLPGLSWPG +EA+ + A + + RRNL GL PP+ K+ EA A A G+ + S + R G EDGNYSSTDDE G RD S GLGS +VLPSVLEQ TVDV+SL+EADD+FLL PTPQG+KSYCII RT S IRTYFRLFLQEQRP A
Sbjct: 24 ESRDAAALALALRSTLEQARAGQMSWSDRDALLGWLHKNRKSMPTPCLGLCGRLENRLSFSFLPGLSWPGHRQEALPSTAAXXXXXXXXXXXXXXGSAETVVVRRRNLAGLPPPVGKNASEAAEA--DAXXXXXGSSSAASPSYVSPDSKRGKG-AGQEDGNYSSTDDEAGAAGVIGLGGAPRDLVSSGLGSPEVLPSVLEQATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLA 274
BLAST of mRNA_H-paniculata_contig11084.704.1 vs. uniprot
Match:
D8LGZ8_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI)
HSP 1 Score: 152 bits (384), Expect = 4.350e-38
Identity = 100/245 (40.82%), Postives = 122/245 (49.80%), Query Frame = 1
Query: 4 DSRDAITLVQVLGGTLEEARAGEISWPDRELVGKWLDRNGKLVPASCSGLCRQLETRLTFSFLPGLSWPG--REAVNAVNAGARPRPGATAAT----AGAIMATSRRNLVGLVPPLDKSTEEALAAAGSAASTGLGTEAFGGGSANAGQVLRSIGRTALEDGNYSSTDDEGIARDGFSPGLGSTDVLPSVLEQDTVDVNSLEEADDDFLLCPTPQGIKSYCIIHRTSSRIRTYFRLFLQEQRPYA 720
+SRDA L L TLE+ARAG++SW DR+ + W+ +N K +P C GLC +LE RL+FSFLPGLSWPG +EAV + A P + + RRNL GL PP+ K+ EA A +A TVDV+SL+EADD+FLL PTPQG+KSYCII RT S IRTYFRLFLQEQRP A
Sbjct: 24 ESRDAAALALALRSTLEQARAGQMSWSDRDALLGWMHKNRKSMPTPCVGLCGRLENRLSFSFLPGLSWPGHRQEAVPSTAVSAAPXXXXXXXXXXHGSADTVVIRRRNLAGLPPPVGKNASEAAEAEAAA----------------------------------------------------------------TVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLA 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11084.704.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.13e-56 / Id = 51.18 Expect = 4.35e-38 / Id = 40.82 Sequence A0A6H5KJG2_9PHAE D8LGZ8_ECTSI
Match Name E-value Identity Description
A0A6H5KJG2_9PHAE 2.130e-56 51.18 Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGZ8_ECTSI 4.350e-38 40.82 Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 4
Model size 926
Cds size 924
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11084.704.1
>prot_H-paniculata_contig11084.704.1 ID=prot_H-paniculata_contig11084.704.1|Name=mRNA_H-paniculata_contig11084.704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
SDSRDAITLVQVLGGTLEEARAGEISWPDRELVGKWLDRNGKLVPASCSG LCRQLETRLTFSFLPGLSWPGREAVNAVNAGARPRPGATAATAGAIMATS RRNLVGLVPPLDKSTEEALAAAGSAASTGLGTEAFGGGSANAGQVLRSIG RTALEDGNYSSTDDEGIARDGFSPGLGSTDVLPSVLEQDTVDVNSLEEAD DDFLLCPTPQGIKSYCIIHRTSSRIRTYFRLFLQEQRPYALGSAVPAPST PTPIGTGGGGGNTGIATGGSSSGVASGVVAATTGVNSGGGGGGIETLKAF LTSGGTGV back to top mRNA from alignment at H-paniculata_contig11084:2871..8174-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11084.704.1 ID=mRNA_H-paniculata_contig11084.704.1|Name=mRNA_H-paniculata_contig11084.704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5304bp|location=Sequence derived from alignment at H-paniculata_contig11084:2871..8174- (Halopteris paniculata Hal_grac_a_UBK monoicous)TCGGATAGCCGAGATGCCATTACGCTGGTCCAGGTGCTTGGCGGCACTCT
GGAGGAGGCCCGCGCGGGGGAAATAAGCTGGCCGGACCGAGAGTTGGTGG
GCAAGTGGCTCGATAGAAACGGGAAGTTGGTACCCGCCTCATGCTCGGGG
CTGTGCCG GTAAGCCGGAGGGCAGTGGTCGTGTGGGTATGGAACATCCTG
AGAGATCTCCAGGGTTCGTATACAGCTAGTTGACGTTAGGTTCCCTTTGA
GGCACGCCAATTTGTGGGACACGAATTAGGTCGGTACCAAGGTGACCGAA
ACACTGGGGTAGAATATCGCCAAACTTGGGTCCCTCCTATGTATGTTGCA
TATACAGCGTGATAAGACGTTGACAGGGTTTCCTACAATATAAAGGCCAA
CCTTTTCGGCGCATACTGTGAGGCCTTAATGTGGGTAATCCACAGAGTTT
GGATATTTGAAGGATCTTTCAATATTTCGAAGAAGTAATATGAACCGGTT
GGCTTCACGTCTGATAACTACCAGGGTCAGTTGCAAGTTAGCTTGCGCAT
GCATGTTTTGATGTCTAGCCGGCTTTGCAGGAAACGAAATCCGCCTTGCC
TGTGTCCATCTCACCGATTTTTCTTTGAGCGATATATCTCGTTATCGGTC
GATGAGTTGATTCAGTTTACTCGAGTTCGGAATACAATTCAAAGTTTTAT
CAGGTCTCTCTCTCCTTCCCTCTGTTTCTTTCTCGTTTATGATCCGCCCT
AATATAGCCCAGGAGTAGCCCATCGTTGATGTCTTCTTCAGGCCGCTGTA
CAGGAGTGTTGCACAGTCAACTGTGTTTGATCTTAGGGCGGGGGACGTAA
GATGGAGGCGAACATTTCTGTTTGCGAAAGGAGTTTGCCGCCTGCACTCT
CGTGTGGCTGGTGTTAGAAATTTGTGAAGTATCAATAATAACGTAGTGCC
ATTGTCTTGACCTGTCCCCGCCGTACTGCTGCTGGTGGTAGTGACTTACA
ACGGATTGTGTTATTGTACCAAATATGCGTGTGACTACGCCGACTTTTAG
CAAAGACCCACAAGGAATGTTTTGTTCGTTTCGTGTTGTACACTTGTAGT
GGAGTATGACGATGTCTGCGTTAACCCATTCAGTCATTATCCGGTATTTT
GTCCTCGACCCACGTACATTTCAACGCCTCACTGCGCTCGTAACGACTCC
CTTGCGCTTGTGAAGACTGAAGGCGCATTCGATGTCCGTGAAAACTCGGT
TTTCAACTTTCATCGAACAAGTTTGAAAAACGGTTCCGGAACGACAACGG
CCTTACATGACATGTGGACTCAACAAAGAACCCACCAAACCTCCAACAAA
CTACGTCTTATAACACAAGACATGAAGCCACAATAGGAAGAACGTGCTCC
AATTGCCAAAGATTTGGATAATGACCCTTACAAGGCTGAAAATCACACTG
CGAAGTTGGCTTGCAATGCTGCACGAGCCACACGTTAAGTTTTGCGGCGT
TTTTGGATTTTATGTAGTTTATATAGTGAGGATATACCCGCAGCCCCAGC
GAAAGTCCACTTGACTACTTTGAAACAAATTACCCCTCTATCACAAAAAC
TTGCAGTTTAGTTGCAAAGAGCCTTTGACATATGAATACAGTCAGTACAG
TCGAGAGGAATATTCCGGCGGCTGTGATAGTGTGTGTGTGAGTGTATGCA
ATATATTTTTTATACCGTAAACTATTCCACTATTCTTCCTCGCCCCCCGA
CCACCCACCCACCCACCGCATTCCCACCTCCAGGCAACTGGAAACCCGCC
TAACGTTCTCTTTCCTCCCAGGCCTGTCGTGGCCGGGCCGCGAAGCCGTT
AATGCCGTTAATGCCGGGGCACGCCCAAGGCCAGGAGCAACAGCAGCAAC
AGCGGGGGCGATTATGGCGACATCAAGGCGAAACCTGGTCGGCCTTGTCC
CTCCCCTAGACAAGAGCACTGAGGAAGCCTTGGCGGCGGCGGGATCGGCA
GCTTCTACCGGGCTGGGGACGGAAGCGTTTGGCGGGGGTTCTGCGAATGC
GGGGCAGGTGCTACGTAGCATCGGACGGACGGCCTTAGAAGATGGGAACT
ACTCGTCTACTGACGATGAGGGGATCGCGCGGG GTGAGGCAGCAGCGGCG
GGCGGGCGGACAGGCGGGCGGGCTGCAGTGTTTTTTTTCCGATAAGTAAA
TATATATGCTCACTGTATATATATATATATTTATCTAATACATTAAGGTG
ACGATAATCGTTTCTGATATCTTGACGGAAACTCAGGGTGCATTGCGAAC
GTAGCGAGTCACAGCGAGGCTCAGCAAGCCGTCGTGCTCGAATCATGTGA
GCTTGAATTTGAGGGTATGAGGACAATGCACGGCGGATTGCACGGCGGGT
TGTAGCCTTGGACATGCTGCTCGCACACCTGTTAGTTTAGGCAATCGGTA
GGGCCACATGAAAAAAAATCACTCCAAAGGTGCACAAGGCTAGCCTGTGA
CGAATGACCAACACGGCATTATATGTACCGTAATGTGAAAACGAGAGTAA
CTGCCCTCAATAGATGTTGGTTGATAACCACCCCTTTCAAGGTGTTTTTC
CTCAGGTGGCCACCACAGCATCGTGTTTTTTTTTAGACAGGATGTTACTA
CCATTAGGCGGATCATCGTCATCGCTCAAGGTTACTGATGTCGCCATCAT
CCTCTCTCTTTGTCGATTATAAGAACGAACAAACCAAAGGCTCACCGAAA
TTAAAAATAGCGAATCTTTTCACTAGCAGTGCATCGTCGCCGCCGGCGCC
GTCCCTACCGCCGCTGCAACCCCCCCGTCTGCTTGTGATTTTTTACGTTT
TCTTGGTAATTTTTCGTTTTGGTGGTGGTTCTCCCTCCGTTTTTTTTACT
CCTCTCTATTGTTTGCGTTTGTGTCTCTGTTTTTTTCAGATGGATTTAGC
CCGGGACTTGGATCAACCGACGTGCTGCCTTCCGTGCTAGAACAGGATAC
GGTAGACGTGAACAGCCTGGAGGAAGCAGACGACGACTTTTTGCTCTGTC
CTACGCCGCAGGGGATCAAGAGCTATTGCATCATACACAGAACTAG GTCA
GGCAACCAATAATGGTAAACCAATCGCGCTATCAAACGCACCTATTTACG
ATGGAATTAGCTGACGACCAGTCGTGAATAATCCCTAGTGCGTGGACAGA
ATGCTCGATCGGCTAGTTAGAGTAGTGCATTTCAGGTGCAAAATGGTGTC
CGTATCGTTTGCCGTTTTGGAGGGCTTTATCGTGGATTTAGCACAGAGCG
AAAAAGGGCAACCACCGGCCTCCTTTGTAACGACCAAATAGTAAACAAGC
AATCTACACTACTAGCTGACTACGTGGTCAGAATTTGCTGAAGGGTTAGG
TCTCGGTACGTGGAGGGTTTAGTTTCGCCTTGAAACCCAGAACGATCGGT
CCTGAGCGTCTGACACCATCTCAATTTTTTCGACGACCGGTTCTTTTTCG
GAGATTTGAGTGTGTTTCGGAGATTAACAAATAAGTAGATACATCGTCAT
GCCGTCTCTCTTTAAACAGCAACACCTATGGTACACCAATATTCGTGATT
CTGAATGTATATGCCTTTCCTTACCCTACAGGTAAAGTTGATACTGGTCA
TCATTCTGTAAAAAAATCCTTCTTAGGTTTGTTCAGTTCGTGGATAATAA
CTAAGGGATCCAACAGTTTGCAAAATTTTGAGCATATCTCCACTTTTTTC
ACAGTCATGACATGTTTTTATGTACAGTAGGTGACCCTATAAAAAAGGTA
TACCCAATACAATATACCTTTTTTCGGATGACACATCTTTTCGGAATATA
GTGATTGAGTATAGAGCCTGTATTTGAATAAGGTATGGGACCTATACAAG
GTATAATTTTGGCCGTGCACCAGCTATACCTTGTATAGGTCCACGTATTG
TACTGTGGTACATAACTTTTTTTTTTTTTTTCCACGTTCGAATTGTTTTT
TACTCTTAAATAGACCCCATCATTGGTATTTAAAAAAAACAAACTATTTT
CATAGTGTAGACTGCAGATGTTGTCGTGCTGGTGAAGCTGTCCTCGGCGA
TTGGCGCATGTAGTGATGTCGCGATGTTGTAGTTGGTGCAGAACTCTTGC
TCCTGAATGAAGTGCACCACTGGTCATCTTTCACTGTCGTGTGTTATTGC
TGTCGCATATCATGCACTGTGTACATTTTGATCAGTCCCGAACATCTTAT
GCACACGAAAGATGACAGCAATTCAGTAACTACAGTGGGGATACGGTGTA
AACGTCAGGGGAGCAAGCACTATAGGTGTGTAGTATTACGGGCCAAGCGG
GCACGAAGCTTCATCCATAGCGTGGCCTGAACGTTAGTCAACAACTGTAC
ATTAGTAGTTTATGTTCTCCGACATGGAGTGATACACATGAACGAGTTTG
CATTTGTTCCCCTATCTTAATCTTGAGCTAGTTATCTTGTTTCGTTATTT
GGATCTTCAGTATGTATTTTGACCAGTGCGATATTCAATGTTCAAGGTTC
CTTAATTCCAAATATTTGTGGTATCGTATCATGTAGTTTTATGGTTCGAA
TACGTTTTTGTGATAGCTCTTCATCGAACAGTGTACGTACTTTTTATAAA
AATCTAATATTCTCAGTTATGCAGTTTGGGCGTTATGGATTACTATCCAT
ATTCCTGGTCTCTGTTAGTGGGATATGGGTCTTATTTAGCGCATCTAGTA
GTAGTCTCAATTGCCTATATTGGCCATATTCATGGTCTTCATAATTGTGA
TGGAGATGTGTCGCTTCTTGTAGTCTCAGTTGTGTACCTCTGCATCGTAT
TTATCTTCATACATGAATGTATATATACATCCATACTCGAGTATACACAA
GTATGCCCGCCCACCCACCAGCCCACTTACGTACACATATACATACACAA
ACACATGCGCATATACATACACATATTCATATACCCACACCACATACAAA
CATACCCACCCACCCACCCACTCCACCCTTACCGGTGCACCAGCTCCCGC
ATTCGAACATACTTTAGGTTATTCTTGCAGGAGCAACGTCCGTACGCCTT
GGGGTCCGCCGTCCCCGCTCCGTCGACACCAACACCAATAGGGACCGGCG
GTGGAGGCGGCAACACCGGCATCGCTACAGGAGGGTCGTCATCCGGCGTA
GCGAGCGGAGTGGTAGCGGCGACCACAGGAGTAAATAGCGGCGGCGGGGG
CGGGGGAATAGAAACCCTCAAGGCGTTTCTAACGTCGGGGGGCACAGGTG
TG GG back to top Coding sequence (CDS) from alignment at H-paniculata_contig11084:2871..8174-
>mRNA_H-paniculata_contig11084.704.1 ID=mRNA_H-paniculata_contig11084.704.1|Name=mRNA_H-paniculata_contig11084.704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig11084:2871..8174- (Halopteris paniculata Hal_grac_a_UBK monoicous) TCGGATAGCCGAGATGCCATTACGCTGGTCCAGGTGCTTGGCGGCACTCT GGAGGAGGCCCGCGCGGGGGAAATAAGCTGGCCGGACCGAGAGTTGGTGG GCAAGTGGCTCGATAGAAACGGGAAGTTGGTACCCGCCTCATGCTCGGGG CTGTGCCGTCGGATAGCCGAGATGCCATTACGCTGGTCCAGGTGCTTGGC GGCACTCTGGAGGAGGCCCGCGCGGGGGAAATAAGCTGGCCGGACCGAGA GTTGGTGGGCAAGTGGCTCGATAGAAACGGGAAGTTGGTACCCGCCTCAT GCTCGGGGCTGTGCCGGCAACTGGAAACCCGCCTAACGTTCTCTTTCCTC CCAGGCCTGTCGTGGCCGGGCCGCGAAGCCGTTAATGCCGTTAATGCCGG GGCACGCCCAAGGCCAGGAGCAACAGCAGCAACAGCGGGGGCGATTATGG CGACATCAAGGCGAAACCTGGTCGGCCTTGTCCCTCCCCTAGACAAGAGC ACTGAGGAAGCCTTGGCGGCGGCGGGATCGGCAGCTTCTACCGGGCTGGG GACGGAAGCGTTTGGCGGGGGTTCTGCGAATGCGGGGCAGGTGCTACGTA GCATCGGACGGACGGCCTTAGAAGATGGGAACTACTCGTCTACTGACGAT GAGGGGATCGCGCGGGGCAACTGGAAACCCGCCTAACGTTCTCTTTCCTC CCAGGCCTGTCGTGGCCGGGCCGCGAAGCCGTTAATGCCGTTAATGCCGG GGCACGCCCAAGGCCAGGAGCAACAGCAGCAACAGCGGGGGCGATTATGG CGACATCAAGGCGAAACCTGGTCGGCCTTGTCCCTCCCCTAGACAAGAGC ACTGAGGAAGCCTTGGCGGCGGCGGGATCGGCAGCTTCTACCGGGCTGGG GACGGAAGCGTTTGGCGGGGGTTCTGCGAATGCGGGGCAGGTGCTACGTA GCATCGGACGGACGGCCTTAGAAGATGGGAACTACTCGTCTACTGACGAT GAGGGGATCGCGCGGGATGGATTTAGCCCGGGACTTGGATCAACCGACGT GCTGCCTTCCGTGCTAGAACAGGATACGGTAGACGTGAACAGCCTGGAGG AAGCAGACGACGACTTTTTGCTCTGTCCTACGCCGCAGGGGATCAAGAGC TATTGCATCATACACAGAACTAGATGGATTTAGCCCGGGACTTGGATCAA CCGACGTGCTGCCTTCCGTGCTAGAACAGGATACGGTAGACGTGAACAGC CTGGAGGAAGCAGACGACGACTTTTTGCTCTGTCCTACGCCGCAGGGGAT CAAGAGCTATTGCATCATACACAGAACTAGCTCCCGCATTCGAACATACT TTAGGTTATTCTTGCAGGAGCAACGTCCGTACGCCTTGGGGTCCGCCGTC CCCGCTCCGTCGACACCAACACCAATAGGGACCGGCGGTGGAGGCGGCAA CACCGGCATCGCTACAGGAGGGTCGTCATCCGGCGTAGCGAGCGGAGTGG TAGCGGCGACCACAGGAGTAAATAGCGGCGGCGGGGGCGGGGGAATAGAA ACCCTCAAGGCGTTTCTAACGTCGGGGGGCACAGGTGTGCTCCCGCATTC GAACATACTTTAGGTTATTCTTGCAGGAGCAACGTCCGTACGCCTTGGGG TCCGCCGTCCCCGCTCCGTCGACACCAACACCAATAGGGACCGGCGGTGG AGGCGGCAACACCGGCATCGCTACAGGAGGGTCGTCATCCGGCGTAGCGA GCGGAGTGGTAGCGGCGACCACAGGAGTAAATAGCGGCGGCGGGGGCGGG GGAATAGAAACCCTCAAGGCGTTTCTAACGTCGGGGGGCACAGGTGTG back to top