mRNA_H-paniculata_contig1107.693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1107.693.1 vs. uniprot
Match: W7TN91_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN91_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.200e-21 Identity = 84/272 (30.88%), Postives = 135/272 (49.63%), Query Frame = 3 Query: 249 GSFPRKVSAKSVGRLSDNLAKAKDFYDSWQEGTTKRQQHVHANQSTQSK-----LGVHLGKVSRSNESSTMHRLPLFMKNFLLGTALFSVYEGLDEKLTTTI--------VPELQPNTKVWHGLTKSSVAALAGTSAGACHGTLSFLYESIIENRSLGGSNIKAR-FGGILIAHSLAHGTLFGTYEFVKHSALDMTGTNPSRWGGIAAVAAAGAVAGVAQEAMSYYTTRMERSGICRGLRAA-RRLPLPGLQRIIGSAPGSSLGFLAFEYGR 1019
GSFPR+V K+V +++D ++ A D Y ++ + + + Q K G+H ++ S + P +K+ LGTA+F +YE + L + + V+ ++G AG CHG L +E R + ++ A + G +AHSLAH +LFG++E +K + L +T G+ V AAG +AG+ +E +S+ T E+ G+ LRAA +R LP L+ I +A +SLGFLA+EYGR
Sbjct: 119 GSFPRRVPLKTVSKITDQVSTAWDAYSVFKGSHKEATRDIEVQNRPQHKESLGTAGLHKAQLFGQTLRSAV---PHMVKSGFLGTAVFEMYETSKDTLDNALGLDKDVDGEASFSTSRDVFSLSMMGITGLISGGLAGTCHGLLYVGWEH--ARRLINAQHVVANVWTGTALAHSLAHASLFGSFEVLKDALLAITHARHEEPLGVFVVGAAGGLAGLVEETVSHLTPHWEKEGVS-SLRAAFKRNGLPRLRVISSAALPTSLGFLAWEYGR 384
BLAST of mRNA_H-paniculata_contig1107.693.1 vs. uniprot
Match: A0A7S0XKK1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XKK1_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.290e-8 Identity = 94/372 (25.27%), Postives = 153/372 (41.13%), Query Frame = 3 Query: 72 GELIIMESSRHTETNDSTRDSNGVGAGAARALARQTR-------YIKAVVVRGDTYLARWVSRADIGSFPRKVSAKSVGRLSDNLAKAKDFYDSWQEGTTKRQQHVHANQSTQSKLGVHLGKVSRSNESSTMHRLPLFMKNFLLGTALFSVYEGLDEKLT------TTIVP--ELQPNTKVWHGLTKSSVAALAGTSAGACHGTLSFLYESIIE-------------NRSLGGSNIKARFGGILIAHSLAHGTLFGTYEFVKHS---ALDMTGTN---------PSRWGG-----IAAVAAAGAVAGVAQEAMSYYTTRMERSGICRGLRAARRLPLPGL-----------QRIIGSAPGSSLGFLAFEYGR 1019
G + SR+ E D+ +++ AG AR LAR + + +R D +A ++ I + R + V R+SD + DF ++ QE ++ L K +T L KN +LG A+F+ YE +K ++P E + +TK+W AG AG+ H L ESI+ ++ N A F L+ H+ +H LFG+YE VK + AL T T+ PS G + AVA AG AG+ Q+ +S + ++G ++A++ P+ L + ++ + +S+GF+AFEYGR
Sbjct: 3 GSSTTVYPSRNDE--DAVHENSPESAGLARGLARSAVPKGAGRIAVGRLPLRPDQIIA---TKGRISNPARMAKIQRVARVSDRASTGFDFVEAHQEAKSE------------------LVKKESWGRRATNFAGSL-AKNTILGMAVFATYEEAIDKFAGENQEVLALIPTEETRYSTKLWQHYA-------AGFCAGSVHAGLGSAIESIVNLVWQPLASRFLNSGAAVATPNAAAPFVPNLLHHATSHAVLFGSYETVKRATTLALGTTSTSNTQADTIEPPSEENGFLEGQLVAVALAGGTAGICQQFVSDVAEQAIQAG-----KSAKKKPIGKLLASIQPPRYSAKSLLMLSIPTSIGFVAFEYGR 338
BLAST of mRNA_H-paniculata_contig1107.693.1 vs. uniprot
Match: A0A7R9ZT87_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT87_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 9.570e-6 Identity = 70/237 (29.54%), Postives = 98/237 (41.35%), Query Frame = 3 Query: 456 PLFMKNFLLGTALFSVYE---GLDEKLTTTIVPELQPNTKVWHGLTKSSVAALAGTSAGACHGTLSFLYESIIENRSLGGSNIKARFGGILIAHSLAHGTLFGTYEFVKHSALDMTG-------TNPSRWGG--------IAAVAAAGAVAGVAQEAMSYYT---------------------TRMERSGI----CRGLRAARRL------PLPGLQRIIGSAPGSSLGFLAFEYGR 1019
P +KN +LGT +F VYE G+ ++ Q +T H ++S +AG AG H L +E++ ENR+L + I HSLAH LFG+Y VK+ M S GG I A AG V+GV Q +S+YT T + + I G R+ R PLP + + + PG ++ FLAFEY R
Sbjct: 10 PDLIKNTILGTVVFEVYEQSYGIMQQRWN------QEDTSAQHAF-ETSHHCIAGAIAGTSHAFLGLAFETM-ENRALPTFRYTMQSA---IHHSLAHTVLFGSYAGVKYLLESMIAKQHQQRSATTSLAGGDEFLMEYQIGITATAGGVSGVVQNTVSHYTGMWLQVETTEKTMYQQMLANRTAVTAASIDSPAASGSRSIMRSMINSFRPLPPAGQTLLAFPGMAVAFLAFEYAR 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1107.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1107.693.1 >prot_H-paniculata_contig1107.693.1 ID=prot_H-paniculata_contig1107.693.1|Name=mRNA_H-paniculata_contig1107.693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp MESSRHTETNDSTRDSNGVGAGAARALARQTRYIKAVVVRGDTYLARWVSback to top mRNA from alignment at H-paniculata_contig1107:8825..9891+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1107.693.1 ID=mRNA_H-paniculata_contig1107.693.1|Name=mRNA_H-paniculata_contig1107.693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-paniculata_contig1107:8825..9891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1107:8825..9891+ >mRNA_H-paniculata_contig1107.693.1 ID=mRNA_H-paniculata_contig1107.693.1|Name=mRNA_H-paniculata_contig1107.693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig1107:8825..9891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |