mRNA_H-paniculata_contig1106.687.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: A0A6H5JQM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM1_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.380e-19 Identity = 166/269 (61.71%), Postives = 189/269 (70.26%), Query Frame = 2 Query: 119 GSPSLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPHLSDVDLTENRMPEGRLQGQTLQAWRESSRRR------GSIST-------------------------------NSQAILEKLLFKDDEIKLLRQENEMLKR 814 GS DRE LL LYWS+GGPRW+R QGWA DL W+GV + GRVV+LDL RN L GTIPAA+G L ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P L+D+DLTENR+ GRL+G+ L W+E++R+R G++S N Q L+ ++ KD EI LR ENE L+R Sbjct: 5 GSEQQDREALLALYWSSGGPRWSRNQGWASNDADLGNWHGVMCKD-GRVVRLDLDRNGLVGTIPAALGGLTKVVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQLTDLDLTENRVEAGRLKGKGLMEWKEAARQRLIDSQSGTVSWQHGAAGPSPRATXXXXXXXXARDAAAHRPSFNVQEYLDNMMAKDREIAELRAENERLRR 272
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: D7FQH2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH2_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.730e-19 Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 2 Query: 119 GSPSLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSL 328 GS DRE LL LYWS+GGPRWTR QGWA D+ W+GV GRVV+LDL+RN L GTIPAA+G L Sbjct: 5 GSEQQDREALLALYWSSGGPRWTRNQGWASNDADMGSWHGVTCKN-GRVVRLDLNRNGLVGTIPAALGGL 73
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 4.020e-13 Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2 Query: 128 SLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVL 346 S DR+ L+ L+ STGG WTR+ W + D + W+GVKVN+ GRVV +DL NNL G IP +G+L +++ L Sbjct: 3 SKDRDALVALFCSTGGAGWTRRDNWNTDA-DRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASL 74
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 1.750e-12 Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 2 Query: 128 SLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVL 346 S DR L+ L+ STGG RW R W + DLS+W GV VNE GRVVKLDL NNL+G IP A+G+L+E++ L Sbjct: 3 SEDRAALVALFRSTGGTRWDRNNKW-DTDADLSQWSGVHVNEDGRVVKLDLFYNNLEGRIPEALGALQELTHL 74
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 2.320e-12 Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 2 Query: 128 SLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVLR 349 S DR L+ L+ S GG RW R + W G+ DLS+WYGV V GRVV+L LS NNL+GTIP A+G L E+ LR Sbjct: 3 SEDRAALVALFRSAGGTRWHRNKNWDTGA-DLSQWYGVHVKHDGRVVELWLSSNNLEGTIPEALGVLTELKYLR 75
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: A0A2A2G600_9BACT (Two component regulator three Y domain protein (Fragment) n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G600_9BACT) HSP 1 Score: 73.2 bits (178), Expect = 6.650e-12 Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2 Query: 104 IAMVRGSPSLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVL 346 + + GS S DR+ L+ LY +TGG W GW G S W+GV+V+ GRVV+LDL +N L G +P+ +G+L +++ L Sbjct: 21 LELSPGSVSGDRQALMDLYSATGGDSWANNSGWGSGDPSGS-WHGVEVDANGRVVRLDLWKNGLQGQLPSTIGNLTKLTYL 100
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 8.360e-12 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 2 Query: 134 DRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEM 337 DR+ L+ LY +TGG W Q W + DL W+GV VN+ GRVVKL L NNL+G IPA +G L + Sbjct: 5 DRDALVALYRATGGENWRESQNW-DTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANL 71
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: A0A6B0WES6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0WES6_9CHLR) HSP 1 Score: 79.7 bits (195), Expect = 1.040e-11 Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 2 Query: 95 GRSIAMVRGSPSLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVLR 349 G++ A G DRE L+ LY +TGGP W W L +WYGV + GRVV+L+LS N+L G +PA +G L E+ LR Sbjct: 352 GQTPAEADGDAGTDREALVALYHATGGPNWRNDANWLS-DEPLRRWYGVTTDSGGRVVRLELSSNDLSGELPAELGQLSELQWLR 435
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: A0A6L7WC15_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WC15_9CHLR) HSP 1 Score: 79.7 bits (195), Expect = 1.170e-11 Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 2 Query: 95 GRSIAMVRGSPSLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSLEEMSVLR 349 G++ A G DRE L+ LY +TGGP W W L +WYGV + GRVV+L+LS N+L G +PA +G L E+ LR Sbjct: 352 GQTPAEADGDAGTDREALVALYHATGGPNWRNDANWLS-DEPLRRWYGVTTDSGGRVVRLELSSNDLSGELPAELGQLSELQWLR 435
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 2.480e-11 Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 128 SLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGRVVKLDLSRNNLDGTIPAAMGSL 328 S DR+ L+ L+ +TGG WTR+ W ++ L W GVKVNE GRVV+LDLS NNL GTIP +G L Sbjct: 189 SPDRDALVALFHATGGDNWTRKSNWCTSAK-LGTWKGVKVNEEGRVVELDLSDNNLRGTIPVELGKL 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1106.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1106.687.1 >prot_H-paniculata_contig1106.687.1 ID=prot_H-paniculata_contig1106.687.1|Name=mRNA_H-paniculata_contig1106.687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp MVRGSPSLDRECLLCLYWSTGGPRWTRQQGWAEGSRDLSKWYGVKVNELGback to top mRNA from alignment at H-paniculata_contig1106:2550..15882+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1106.687.1 ID=mRNA_H-paniculata_contig1106.687.1|Name=mRNA_H-paniculata_contig1106.687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13333bp|location=Sequence derived from alignment at H-paniculata_contig1106:2550..15882+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1106:2550..15882+ >mRNA_H-paniculata_contig1106.687.1 ID=mRNA_H-paniculata_contig1106.687.1|Name=mRNA_H-paniculata_contig1106.687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig1106:2550..15882+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |