Gvermi3776.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3776.t1
Unique Name	Gvermi3776.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	666

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4251404..4253401 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002945623.1
PFAMs	BRCT_2,Pescadillo_N
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K14843
GOs	GO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0070545,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	2.56e-110
EggNOG OGs	COG5163@1\|root,KOG2481@2759\|Eukaryota,37RNT@33090\|Viridiplantae,34HHF@3041\|Chlorophyta
Description	Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
COG category	A
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3776	Gvermi3776	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4251404..4253401 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3776.t1.stop1	Gvermi3776.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4251404..4251406 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3776.t1.CDS1	Gvermi3776.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4251404..4253401 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3776.t1.exon1	Gvermi3776.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4251404..4253401 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3776.t1.start1	Gvermi3776.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4253399..4253401 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3776.t1	Gvermi3776.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4251404..4253401 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4251404..4253401-
coding sequence from alignment at ScGOVlb_41:4251404..4253401-

mRNA sequence

>Gvermi3776.t1 ID=Gvermi3776.t1|Name=Gvermi3776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp
MGREKKKGTSGNAKAFISREKALKKLQLSLQEFRRLCILKGIYPREPRKK
FEGSDKTYYLRKDIDFLAHERLINTIRKQNAHKKKVIKARSKRRIDILRK
LALNVPKSRLDHLVLERYPNFIDAIRELDDPLCIIALFANLPADHRLGIA
PERVTKSQRLLREFHNFVAQTNSLRKVFVSIKGYYFQAILMGETVTWITP
HRFSQILPDDVDYSVMLTFLELYECIMSFVNFRLYTTQNLAYPPKVLRDA
DANAMELSSLLLEKAKPSGALETGNDLEDKKEVANSLPQDAVRMVEKLAM
ESQVQEESDEEGSDADHKESHQDAPKEDNPGLRESDNQNSGVFQGKSVVL
GREVPFAEIEFCLKAAGALKVTREDDLPENENRLSGYTHWVIDRPKVQGN
RDMSLEYVQPQYVFDSINASMLLPTLLYGPGAPLPPHLSPFVTEEDDGGY
RPWFSDVIDRIKAGDKSIVDEAAAVVYADRDSKREEENEKKVRSQASKKE
GKQKEKRSESNSKMETSGKAKPVSRNNIKSTKEVNGRKARDESMDDEKLK
LGNTNDSKSECETGCGGNCDATVKKAENSRSDSEDAEDEEGREEEISKAN
NAKVEKEGREMAALMLSRKKMRQYRKHKKAENAKIAAKEKLVQKRKRIEA
ARGEKNVDSLKRRRQ*

spliced messenger RNA

>Gvermi3776.t1 ID=Gvermi3776.t1|Name=Gvermi3776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at ScGOVlb_41:4251404..4253401- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCGAGAAGAAGAAGGGCACCTCGGGAAACGCTAAGGCTTTCAT
CAGTCGCGAGAAGGCGCTTAAAAAGCTTCAACTTTCCCTGCAAGAATTCC
GAAGGCTTTGTATTTTGAAAGGAATTTATCCTCGAGAACCGAGGAAGAAA
TTTGAAGGATCTGATAAGACATATTATCTCCGTAAGGACATCGACTTCTT
AGCTCACGAGCGGCTTATCAACACCATTCGAAAGCAAAATGCACACAAGA
AGAAAGTCATCAAGGCACGTTCCAAGCGTCGAATTGACATTCTGCGCAAA
TTGGCTCTGAACGTTCCGAAAAGTAGACTAGATCATTTGGTTCTGGAACG
TTATCCGAATTTTATCGATGCCATTCGAGAATTGGATGACCCTCTTTGTA
TTATAGCACTGTTCGCCAATCTTCCGGCAGATCACAGGTTGGGAATCGCT
CCTGAACGGGTCACCAAATCGCAAAGATTACTTCGGGAGTTTCACAATTT
TGTAGCTCAGACGAACTCCTTGCGCAAAGTGTTTGTTTCTATCAAAGGGT
ACTATTTCCAAGCAATTTTGATGGGAGAAACCGTAACGTGGATCACGCCT
CACCGATTCAGCCAGATATTACCAGATGATGTAGACTACTCGGTTATGCT
CACTTTTCTTGAGCTATATGAGTGCATCATGAGCTTTGTCAATTTTCGAC
TGTATACAACCCAAAATTTAGCTTATCCTCCAAAAGTACTTCGTGATGCC
GACGCTAATGCCATGGAACTTTCTTCTCTCCTGCTTGAGAAGGCTAAACC
TTCTGGAGCACTCGAAACTGGAAACGATCTTGAAGATAAGAAAGAAGTCG
CCAATTCTTTACCCCAAGATGCTGTGAGAATGGTGGAGAAGTTAGCTATG
GAATCCCAGGTGCAGGAAGAGTCTGATGAAGAAGGCTCCGATGCCGATCA
TAAAGAGAGCCACCAAGATGCACCAAAAGAGGATAACCCTGGGCTCCGAG
AGTCAGACAACCAGAACTCCGGCGTCTTTCAAGGTAAATCAGTTGTTCTC
GGACGAGAAGTACCGTTCGCAGAGATTGAATTTTGTCTGAAAGCAGCTGG
GGCGCTAAAAGTGACCAGAGAAGATGACTTACCTGAAAATGAAAATCGTC
TGTCAGGTTACACACACTGGGTCATCGATCGCCCAAAAGTCCAAGGAAAT
CGAGATATGTCACTCGAATACGTTCAACCTCAATACGTGTTCGATTCCAT
AAACGCCTCAATGCTCCTGCCAACTTTGTTGTACGGTCCCGGAGCTCCTC
TGCCTCCGCATTTGAGTCCATTTGTTACAGAAGAAGATGATGGTGGATAT
CGCCCATGGTTCTCTGATGTCATCGATCGCATAAAAGCCGGTGATAAATC
TATTGTCGACGAGGCTGCTGCTGTTGTGTACGCCGATCGGGACTCAAAGC
GTGAAGAAGAGAACGAAAAGAAAGTCCGCTCTCAAGCATCGAAGAAGGAA
GGCAAGCAAAAGGAGAAGCGCAGTGAATCTAATTCTAAAATGGAGACCTC
AGGTAAGGCAAAACCAGTCTCACGTAATAATATTAAGTCAACCAAAGAAG
TGAACGGACGAAAGGCCAGAGATGAAAGTATGGACGATGAAAAATTGAAA
TTGGGTAATACAAACGACAGCAAAAGTGAGTGTGAGACTGGCTGTGGAGG
AAATTGTGATGCGACAGTGAAGAAGGCTGAGAACAGTCGCAGCGATAGTG
AGGATGCTGAAGATGAAGAGGGAAGAGAAGAGGAGATCTCCAAAGCAAAT
AACGCGAAAGTAGAGAAAGAAGGGCGTGAGATGGCAGCTCTGATGTTAAG
TAGAAAGAAAATGCGTCAATATCGAAAACACAAAAAGGCAGAGAATGCGA
AGATAGCCGCCAAGGAGAAACTCGTTCAGAAACGGAAACGAATCGAGGCC
GCGAGGGGAGAAAAAAATGTTGACAGTTTGAAAAGAAGAAGACAGTAA

protein sequence of Gvermi3776.t1

>Gvermi3776.t1 ID=Gvermi3776.t1|Name=Gvermi3776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=666bp
MGREKKKGTSGNAKAFISREKALKKLQLSLQEFRRLCILKGIYPREPRKK
FEGSDKTYYLRKDIDFLAHERLINTIRKQNAHKKKVIKARSKRRIDILRK
LALNVPKSRLDHLVLERYPNFIDAIRELDDPLCIIALFANLPADHRLGIA
PERVTKSQRLLREFHNFVAQTNSLRKVFVSIKGYYFQAILMGETVTWITP
HRFSQILPDDVDYSVMLTFLELYECIMSFVNFRLYTTQNLAYPPKVLRDA
DANAMELSSLLLEKAKPSGALETGNDLEDKKEVANSLPQDAVRMVEKLAM
ESQVQEESDEEGSDADHKESHQDAPKEDNPGLRESDNQNSGVFQGKSVVL
GREVPFAEIEFCLKAAGALKVTREDDLPENENRLSGYTHWVIDRPKVQGN
RDMSLEYVQPQYVFDSINASMLLPTLLYGPGAPLPPHLSPFVTEEDDGGY
RPWFSDVIDRIKAGDKSIVDEAAAVVYADRDSKREEENEKKVRSQASKKE
GKQKEKRSESNSKMETSGKAKPVSRNNIKSTKEVNGRKARDESMDDEKLK
LGNTNDSKSECETGCGGNCDATVKKAENSRSDSEDAEDEEGREEEISKAN
NAKVEKEGREMAALMLSRKKMRQYRKHKKAENAKIAAKEKLVQKRKRIEA
ARGEKNVDSLKRRRQ*

mRNA from alignment at ScGOVlb_41:4251404..4253401-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3776.t1 ID=Gvermi3776.t1|Name=Gvermi3776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at ScGOVlb_41:4251404..4253401- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCGCGAGAAGAAGAAGGGCACCTCGGGAAACGCTAAGGCTTTCAT
CAGTCGCGAGAAGGCGCTTAAAAAGCTTCAACTTTCCCTGCAAGAATTCC
GAAGGCTTTGTATTTTGAAAGGAATTTATCCTCGAGAACCGAGGAAGAAA
TTTGAAGGATCTGATAAGACATATTATCTCCGTAAGGACATCGACTTCTT
AGCTCACGAGCGGCTTATCAACACCATTCGAAAGCAAAATGCACACAAGA
AGAAAGTCATCAAGGCACGTTCCAAGCGTCGAATTGACATTCTGCGCAAA
TTGGCTCTGAACGTTCCGAAAAGTAGACTAGATCATTTGGTTCTGGAACG
TTATCCGAATTTTATCGATGCCATTCGAGAATTGGATGACCCTCTTTGTA
TTATAGCACTGTTCGCCAATCTTCCGGCAGATCACAGGTTGGGAATCGCT
CCTGAACGGGTCACCAAATCGCAAAGATTACTTCGGGAGTTTCACAATTT
TGTAGCTCAGACGAACTCCTTGCGCAAAGTGTTTGTTTCTATCAAAGGGT
ACTATTTCCAAGCAATTTTGATGGGAGAAACCGTAACGTGGATCACGCCT
CACCGATTCAGCCAGATATTACCAGATGATGTAGACTACTCGGTTATGCT
CACTTTTCTTGAGCTATATGAGTGCATCATGAGCTTTGTCAATTTTCGAC
TGTATACAACCCAAAATTTAGCTTATCCTCCAAAAGTACTTCGTGATGCC
GACGCTAATGCCATGGAACTTTCTTCTCTCCTGCTTGAGAAGGCTAAACC
TTCTGGAGCACTCGAAACTGGAAACGATCTTGAAGATAAGAAAGAAGTCG
CCAATTCTTTACCCCAAGATGCTGTGAGAATGGTGGAGAAGTTAGCTATG
GAATCCCAGGTGCAGGAAGAGTCTGATGAAGAAGGCTCCGATGCCGATCA
TAAAGAGAGCCACCAAGATGCACCAAAAGAGGATAACCCTGGGCTCCGAG
AGTCAGACAACCAGAACTCCGGCGTCTTTCAAGGTAAATCAGTTGTTCTC
GGACGAGAAGTACCGTTCGCAGAGATTGAATTTTGTCTGAAAGCAGCTGG
GGCGCTAAAAGTGACCAGAGAAGATGACTTACCTGAAAATGAAAATCGTC
TGTCAGGTTACACACACTGGGTCATCGATCGCCCAAAAGTCCAAGGAAAT
CGAGATATGTCACTCGAATACGTTCAACCTCAATACGTGTTCGATTCCAT
AAACGCCTCAATGCTCCTGCCAACTTTGTTGTACGGTCCCGGAGCTCCTC
TGCCTCCGCATTTGAGTCCATTTGTTACAGAAGAAGATGATGGTGGATAT
CGCCCATGGTTCTCTGATGTCATCGATCGCATAAAAGCCGGTGATAAATC
TATTGTCGACGAGGCTGCTGCTGTTGTGTACGCCGATCGGGACTCAAAGC
GTGAAGAAGAGAACGAAAAGAAAGTCCGCTCTCAAGCATCGAAGAAGGAA
GGCAAGCAAAAGGAGAAGCGCAGTGAATCTAATTCTAAAATGGAGACCTC
AGGTAAGGCAAAACCAGTCTCACGTAATAATATTAAGTCAACCAAAGAAG
TGAACGGACGAAAGGCCAGAGATGAAAGTATGGACGATGAAAAATTGAAA
TTGGGTAATACAAACGACAGCAAAAGTGAGTGTGAGACTGGCTGTGGAGG
AAATTGTGATGCGACAGTGAAGAAGGCTGAGAACAGTCGCAGCGATAGTG
AGGATGCTGAAGATGAAGAGGGAAGAGAAGAGGAGATCTCCAAAGCAAAT
AACGCGAAAGTAGAGAAAGAAGGGCGTGAGATGGCAGCTCTGATGTTAAG
TAGAAAGAAAATGCGTCAATATCGAAAACACAAAAAGGCAGAGAATGCGA
AGATAGCCGCCAAGGAGAAACTCGTTCAGAAACGGAAACGAATCGAGGCC
GCGAGGGGAGAAAAAAATGTTGACAGTTTGAAAAGAAGAAGACAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:4251404..4253401-

>Gvermi3776.t1 ID=Gvermi3776.t1|Name=Gvermi3776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1998bp|location=Sequence derived from alignment at ScGOVlb_41:4251404..4253401- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCGCGAGAAGAAGAAGGGCACCTCGGGAAACGCTAAGGCTTTCAT
CAGTCGCGAGAAGGCGCTTAAAAAGCTTCAACTTTCCCTGCAAGAATTCC
GAAGGCTTTGTATTTTGAAAGGAATTTATCCTCGAGAACCGAGGAAGAAA
TTTGAAGGATCTGATAAGACATATTATCTCCGTAAGGACATCGACTTCTT
AGCTCACGAGCGGCTTATCAACACCATTCGAAAGCAAAATGCACACAAGA
AGAAAGTCATCAAGGCACGTTCCAAGCGTCGAATTGACATTCTGCGCAAA
TTGGCTCTGAACGTTCCGAAAAGTAGACTAGATCATTTGGTTCTGGAACG
TTATCCGAATTTTATCGATGCCATTCGAGAATTGGATGACCCTCTTTGTA
TTATAGCACTGTTCGCCAATCTTCCGGCAGATCACAGGTTGGGAATCGCT
CCTGAACGGGTCACCAAATCGCAAAGATTACTTCGGGAGTTTCACAATTT
TGTAGCTCAGACGAACTCCTTGCGCAAAGTGTTTGTTTCTATCAAAGGGT
ACTATTTCCAAGCAATTTTGATGGGAGAAACCGTAACGTGGATCACGCCT
CACCGATTCAGCCAGATATTACCAGATGATGTAGACTACTCGGTTATGCT
CACTTTTCTTGAGCTATATGAGTGCATCATGAGCTTTGTCAATTTTCGAC
TGTATACAACCCAAAATTTAGCTTATCCTCCAAAAGTACTTCGTGATGCC
GACGCTAATGCCATGGAACTTTCTTCTCTCCTGCTTGAGAAGGCTAAACC
TTCTGGAGCACTCGAAACTGGAAACGATCTTGAAGATAAGAAAGAAGTCG
CCAATTCTTTACCCCAAGATGCTGTGAGAATGGTGGAGAAGTTAGCTATG
GAATCCCAGGTGCAGGAAGAGTCTGATGAAGAAGGCTCCGATGCCGATCA
TAAAGAGAGCCACCAAGATGCACCAAAAGAGGATAACCCTGGGCTCCGAG
AGTCAGACAACCAGAACTCCGGCGTCTTTCAAGGTAAATCAGTTGTTCTC
GGACGAGAAGTACCGTTCGCAGAGATTGAATTTTGTCTGAAAGCAGCTGG
GGCGCTAAAAGTGACCAGAGAAGATGACTTACCTGAAAATGAAAATCGTC
TGTCAGGTTACACACACTGGGTCATCGATCGCCCAAAAGTCCAAGGAAAT
CGAGATATGTCACTCGAATACGTTCAACCTCAATACGTGTTCGATTCCAT
AAACGCCTCAATGCTCCTGCCAACTTTGTTGTACGGTCCCGGAGCTCCTC
TGCCTCCGCATTTGAGTCCATTTGTTACAGAAGAAGATGATGGTGGATAT
CGCCCATGGTTCTCTGATGTCATCGATCGCATAAAAGCCGGTGATAAATC
TATTGTCGACGAGGCTGCTGCTGTTGTGTACGCCGATCGGGACTCAAAGC
GTGAAGAAGAGAACGAAAAGAAAGTCCGCTCTCAAGCATCGAAGAAGGAA
GGCAAGCAAAAGGAGAAGCGCAGTGAATCTAATTCTAAAATGGAGACCTC
AGGTAAGGCAAAACCAGTCTCACGTAATAATATTAAGTCAACCAAAGAAG
TGAACGGACGAAAGGCCAGAGATGAAAGTATGGACGATGAAAAATTGAAA
TTGGGTAATACAAACGACAGCAAAAGTGAGTGTGAGACTGGCTGTGGAGG
AAATTGTGATGCGACAGTGAAGAAGGCTGAGAACAGTCGCAGCGATAGTG
AGGATGCTGAAGATGAAGAGGGAAGAGAAGAGGAGATCTCCAAAGCAAAT
AACGCGAAAGTAGAGAAAGAAGGGCGTGAGATGGCAGCTCTGATGTTAAG
TAGAAAGAAAATGCGTCAATATCGAAAACACAAAAAGGCAGAGAATGCGA
AGATAGCCGCCAAGGAGAAACTCGTTCAGAAACGGAAACGAATCGAGGCC
GCGAGGGGAGAAAAAAATGTTGACAGTTTGAAAAGAAGAAGACAGTAA