Gvermi3125.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3125.t1
Unique NameGvermi3125.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:147106..147912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_11720T0
Max annot lvl4751|Fungi
Evalue8.67e-06
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3125Gvermi3125Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 147106..147912 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3125.t1.stop1Gvermi3125.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 147106..147108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3125.t1.CDS1Gvermi3125.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 147106..147912 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3125.t1.exon1Gvermi3125.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 147106..147912 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3125.t1.start1Gvermi3125.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 147910..147912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3125.t1Gvermi3125.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 147106..147912 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3125.t1 ID=Gvermi3125.t1|Name=Gvermi3125.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=269bp
MCEYDTSVQRICGTQDILFRTFVQIPQSFPDGNYVLGWAWFGGLNWFGLH
SYFGDYWSCADVQIKGGPFRKSYTPVFYPGENVRSSNSENHGCWAGVNKP
GICSREPCTEHLGGYLKPYPFNQSQIPPAIYAKDSPYSNPFRNPYKDVNI
SSLFTEGQAYVTELKMIDITSETVLDQEFFRDVQIDDKMKLTFRAMTSGP
VRQVDFYMNTKLVRKERHAPYLMFGDRDGKLSYWEDPILAKWNQITIVVT
SRAGKSTSRDFWFRLHKK*
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spliced messenger RNA

>Gvermi3125.t1 ID=Gvermi3125.t1|Name=Gvermi3125.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_41:147106..147912- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGAGTACGATACCTCTGTTCAACGAATCTGTGGAACGCAGGATAT
CTTGTTCCGTACTTTTGTACAAATTCCGCAGTCCTTCCCGGATGGCAACT
ATGTTTTGGGATGGGCCTGGTTTGGTGGTTTGAACTGGTTTGGGCTTCAT
TCTTATTTCGGTGACTACTGGAGTTGTGCCGATGTGCAGATCAAAGGGGG
TCCATTTCGCAAGTCTTACACCCCAGTTTTCTATCCCGGAGAAAACGTCC
GCTCATCCAATTCTGAAAACCACGGGTGTTGGGCTGGGGTCAACAAGCCA
GGAATTTGTTCTCGGGAACCTTGCACGGAACACCTCGGCGGATATCTGAA
ACCGTATCCATTCAACCAATCGCAAATTCCACCAGCGATATATGCAAAAG
ATTCTCCGTATTCGAATCCTTTCAGAAACCCATACAAGGATGTCAATATC
TCATCTCTGTTTACTGAGGGTCAAGCATACGTAACGGAGTTGAAAATGAT
CGATATTACTTCAGAAACAGTTCTCGACCAAGAGTTTTTCAGAGATGTCC
AGATTGATGACAAAATGAAACTGACTTTTCGAGCTATGACAAGTGGCCCG
GTACGACAGGTTGACTTCTATATGAACACCAAGCTCGTTCGTAAGGAGCG
ACACGCCCCTTATCTTATGTTTGGAGATCGAGACGGAAAGCTTTCTTACT
GGGAAGACCCGATTCTCGCCAAGTGGAACCAAATCACAATTGTCGTCACT
TCTCGAGCTGGAAAGTCAACGTCAAGGGATTTCTGGTTCCGTTTACACAA
AAAATAG
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protein sequence of Gvermi3125.t1

>Gvermi3125.t1 ID=Gvermi3125.t1|Name=Gvermi3125.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=269bp
MCEYDTSVQRICGTQDILFRTFVQIPQSFPDGNYVLGWAWFGGLNWFGLH
SYFGDYWSCADVQIKGGPFRKSYTPVFYPGENVRSSNSENHGCWAGVNKP
GICSREPCTEHLGGYLKPYPFNQSQIPPAIYAKDSPYSNPFRNPYKDVNI
SSLFTEGQAYVTELKMIDITSETVLDQEFFRDVQIDDKMKLTFRAMTSGP
VRQVDFYMNTKLVRKERHAPYLMFGDRDGKLSYWEDPILAKWNQITIVVT
SRAGKSTSRDFWFRLHKK*
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mRNA from alignment at ScGOVlb_41:147106..147912-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3125.t1 ID=Gvermi3125.t1|Name=Gvermi3125.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_41:147106..147912- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTGAGTACGATACCTCTGTTCAACGAATCTGTGGAACGCAGGATAT
CTTGTTCCGTACTTTTGTACAAATTCCGCAGTCCTTCCCGGATGGCAACT
ATGTTTTGGGATGGGCCTGGTTTGGTGGTTTGAACTGGTTTGGGCTTCAT
TCTTATTTCGGTGACTACTGGAGTTGTGCCGATGTGCAGATCAAAGGGGG
TCCATTTCGCAAGTCTTACACCCCAGTTTTCTATCCCGGAGAAAACGTCC
GCTCATCCAATTCTGAAAACCACGGGTGTTGGGCTGGGGTCAACAAGCCA
GGAATTTGTTCTCGGGAACCTTGCACGGAACACCTCGGCGGATATCTGAA
ACCGTATCCATTCAACCAATCGCAAATTCCACCAGCGATATATGCAAAAG
ATTCTCCGTATTCGAATCCTTTCAGAAACCCATACAAGGATGTCAATATC
TCATCTCTGTTTACTGAGGGTCAAGCATACGTAACGGAGTTGAAAATGAT
CGATATTACTTCAGAAACAGTTCTCGACCAAGAGTTTTTCAGAGATGTCC
AGATTGATGACAAAATGAAACTGACTTTTCGAGCTATGACAAGTGGCCCG
GTACGACAGGTTGACTTCTATATGAACACCAAGCTCGTTCGTAAGGAGCG
ACACGCCCCTTATCTTATGTTTGGAGATCGAGACGGAAAGCTTTCTTACT
GGGAAGACCCGATTCTCGCCAAGTGGAACCAAATCACAATTGTCGTCACT
TCTCGAGCTGGAAAGTCAACGTCAAGGGATTTCTGGTTCCGTTTACACAA
AAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:147106..147912-

>Gvermi3125.t1 ID=Gvermi3125.t1|Name=Gvermi3125.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=807bp|location=Sequence derived from alignment at ScGOVlb_41:147106..147912- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTGAGTACGATACCTCTGTTCAACGAATCTGTGGAACGCAGGATAT
CTTGTTCCGTACTTTTGTACAAATTCCGCAGTCCTTCCCGGATGGCAACT
ATGTTTTGGGATGGGCCTGGTTTGGTGGTTTGAACTGGTTTGGGCTTCAT
TCTTATTTCGGTGACTACTGGAGTTGTGCCGATGTGCAGATCAAAGGGGG
TCCATTTCGCAAGTCTTACACCCCAGTTTTCTATCCCGGAGAAAACGTCC
GCTCATCCAATTCTGAAAACCACGGGTGTTGGGCTGGGGTCAACAAGCCA
GGAATTTGTTCTCGGGAACCTTGCACGGAACACCTCGGCGGATATCTGAA
ACCGTATCCATTCAACCAATCGCAAATTCCACCAGCGATATATGCAAAAG
ATTCTCCGTATTCGAATCCTTTCAGAAACCCATACAAGGATGTCAATATC
TCATCTCTGTTTACTGAGGGTCAAGCATACGTAACGGAGTTGAAAATGAT
CGATATTACTTCAGAAACAGTTCTCGACCAAGAGTTTTTCAGAGATGTCC
AGATTGATGACAAAATGAAACTGACTTTTCGAGCTATGACAAGTGGCCCG
GTACGACAGGTTGACTTCTATATGAACACCAAGCTCGTTCGTAAGGAGCG
ACACGCCCCTTATCTTATGTTTGGAGATCGAGACGGAAAGCTTTCTTACT
GGGAAGACCCGATTCTCGCCAAGTGGAACCAAATCACAATTGTCGTCACT
TCTCGAGCTGGAAAGTCAACGTCAAGGGATTTCTGGTTCCGTTTACACAA
AAAATAG
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