Gvermi3440.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3440.t1
Unique Name	Gvermi3440.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:1440630..1441706 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA11G34550.1
PFAMs	Hexapep,NTP_transferase
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00002
KEGG ko	ko:K00966
KEGG Reaction	R00885
KEGG Pathway	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110
KEGG Module	M00114,M00361,M00362
Evalue	7.28e-149
EggNOG OGs	COG1208@1\|root,KOG1322@2759\|Eukaryota,37NVZ@33090\|Viridiplantae,3GF72@35493\|Streptophyta,4JJKN@91835\|fabids
EC	2.7.7.13
Description	Mannose-1-phosphate
COG category	M
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3440	Gvermi3440	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 1440630..1441706 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3440.t1.start1	Gvermi3440.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 1440630..1440632 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3440.t1.CDS1	Gvermi3440.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 1440630..1441706 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3440.t1.exon1	Gvermi3440.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 1440630..1441706 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3440.t1.stop1	Gvermi3440.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 1441704..1441706 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3440.t1	Gvermi3440.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 1440630..1441706 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:1440630..1441706+
coding sequence from alignment at ScGOVlb_41:1440630..1441706+

mRNA sequence

>Gvermi3440.t1 ID=Gvermi3440.t1|Name=Gvermi3440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=359bp
MKALILVGGFGTRLRPLTLSVPKPLVHFCNKPMILHQIEALVAVGVTEVV
LAVNYQPEKMQAFLKEQAAKLGIKITTSQETEPLGTAGPIKLAEPFLNDG
EPFFVLNSDVSCEYPFEDMIAFQKKTNAAGVLMATPVEDPSKFGVILYEE
SGRIKDFVEKPSTFISRYINAGIYYLTPEVFDRIELRPTSIEKEVFPPMA
ADGSLYVMELKGFWADVGQPKDYLIGQSLKLNALSKRDPEALVAGERYTG
NVMVHSTAKIGQGCSIGPDVVIGANCVIGDGTRIKSATILPGTKVGMHSY
IEKSIIGWESSIGNWVRIEENSVLGENVTVKDEFHLHSSIVLPHKGVKCS
LKPGTIVL*

spliced messenger RNA

>Gvermi3440.t1 ID=Gvermi3440.t1|Name=Gvermi3440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at ScGOVlb_41:1440630..1441706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCTTAATACTCGTTGGTGGTTTCGGCACCCGCTTGCGCCCCCT
CACGCTTTCTGTGCCCAAGCCGCTGGTCCATTTCTGCAACAAGCCCATGA
TACTGCACCAGATTGAGGCTCTCGTCGCCGTTGGCGTCACAGAAGTTGTT
CTTGCCGTCAACTACCAGCCCGAAAAGATGCAGGCCTTCCTCAAGGAACA
AGCTGCCAAGCTTGGAATCAAGATTACAACATCGCAGGAGACCGAACCGC
TCGGTACCGCCGGGCCCATTAAGCTAGCAGAACCTTTCCTCAACGACGGT
GAGCCATTCTTCGTACTTAACTCCGACGTGTCGTGCGAATATCCCTTCGA
GGACATGATTGCTTTTCAAAAGAAGACAAATGCTGCTGGTGTGCTCATGG
CTACTCCTGTGGAGGACCCCTCTAAATTTGGTGTCATTCTCTACGAAGAG
AGCGGCCGCATCAAGGACTTTGTCGAAAAACCTTCAACCTTCATTTCACG
CTACATCAACGCCGGAATCTATTATCTGACACCTGAGGTGTTTGATCGTA
TTGAACTGCGACCCACTTCCATAGAGAAGGAAGTATTCCCCCCGATGGCG
GCTGATGGGTCGCTGTACGTCATGGAACTCAAGGGCTTTTGGGCTGACGT
CGGTCAACCGAAAGATTACCTTATTGGCCAGTCTCTGAAACTCAATGCTC
TGTCAAAGCGGGACCCGGAAGCACTCGTTGCTGGCGAAAGGTACACAGGA
AACGTCATGGTTCACTCCACAGCCAAGATTGGTCAGGGCTGCTCGATTGG
TCCGGATGTTGTTATCGGTGCAAACTGCGTTATTGGCGACGGCACGCGTA
TCAAGTCAGCCACCATCCTGCCAGGCACTAAGGTAGGAATGCACTCGTAT
ATTGAAAAGAGTATCATTGGGTGGGAGTCAAGCATTGGGAATTGGGTACG
TATCGAAGAAAACTCAGTTCTCGGAGAGAACGTGACTGTCAAGGACGAGT
TCCACTTGCACTCGTCGATTGTCCTTCCTCACAAAGGTGTCAAATGTAGC
CTGAAACCAGGCACCATCGTGTTGTGA

protein sequence of Gvermi3440.t1

>Gvermi3440.t1 ID=Gvermi3440.t1|Name=Gvermi3440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=359bp
MKALILVGGFGTRLRPLTLSVPKPLVHFCNKPMILHQIEALVAVGVTEVV
LAVNYQPEKMQAFLKEQAAKLGIKITTSQETEPLGTAGPIKLAEPFLNDG
EPFFVLNSDVSCEYPFEDMIAFQKKTNAAGVLMATPVEDPSKFGVILYEE
SGRIKDFVEKPSTFISRYINAGIYYLTPEVFDRIELRPTSIEKEVFPPMA
ADGSLYVMELKGFWADVGQPKDYLIGQSLKLNALSKRDPEALVAGERYTG
NVMVHSTAKIGQGCSIGPDVVIGANCVIGDGTRIKSATILPGTKVGMHSY
IEKSIIGWESSIGNWVRIEENSVLGENVTVKDEFHLHSSIVLPHKGVKCS
LKPGTIVL*

mRNA from alignment at ScGOVlb_41:1440630..1441706+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3440.t1 ID=Gvermi3440.t1|Name=Gvermi3440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at ScGOVlb_41:1440630..1441706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCCTTAATACTCGTTGGTGGTTTCGGCACCCGCTTGCGCCCCCT
CACGCTTTCTGTGCCCAAGCCGCTGGTCCATTTCTGCAACAAGCCCATGA
TACTGCACCAGATTGAGGCTCTCGTCGCCGTTGGCGTCACAGAAGTTGTT
CTTGCCGTCAACTACCAGCCCGAAAAGATGCAGGCCTTCCTCAAGGAACA
AGCTGCCAAGCTTGGAATCAAGATTACAACATCGCAGGAGACCGAACCGC
TCGGTACCGCCGGGCCCATTAAGCTAGCAGAACCTTTCCTCAACGACGGT
GAGCCATTCTTCGTACTTAACTCCGACGTGTCGTGCGAATATCCCTTCGA
GGACATGATTGCTTTTCAAAAGAAGACAAATGCTGCTGGTGTGCTCATGG
CTACTCCTGTGGAGGACCCCTCTAAATTTGGTGTCATTCTCTACGAAGAG
AGCGGCCGCATCAAGGACTTTGTCGAAAAACCTTCAACCTTCATTTCACG
CTACATCAACGCCGGAATCTATTATCTGACACCTGAGGTGTTTGATCGTA
TTGAACTGCGACCCACTTCCATAGAGAAGGAAGTATTCCCCCCGATGGCG
GCTGATGGGTCGCTGTACGTCATGGAACTCAAGGGCTTTTGGGCTGACGT
CGGTCAACCGAAAGATTACCTTATTGGCCAGTCTCTGAAACTCAATGCTC
TGTCAAAGCGGGACCCGGAAGCACTCGTTGCTGGCGAAAGGTACACAGGA
AACGTCATGGTTCACTCCACAGCCAAGATTGGTCAGGGCTGCTCGATTGG
TCCGGATGTTGTTATCGGTGCAAACTGCGTTATTGGCGACGGCACGCGTA
TCAAGTCAGCCACCATCCTGCCAGGCACTAAGGTAGGAATGCACTCGTAT
ATTGAAAAGAGTATCATTGGGTGGGAGTCAAGCATTGGGAATTGGGTACG
TATCGAAGAAAACTCAGTTCTCGGAGAGAACGTGACTGTCAAGGACGAGT
TCCACTTGCACTCGTCGATTGTCCTTCCTCACAAAGGTGTCAAATGTAGC
CTGAAACCAGGCACCATCGTGTTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:1440630..1441706+

>Gvermi3440.t1 ID=Gvermi3440.t1|Name=Gvermi3440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1077bp|location=Sequence derived from alignment at ScGOVlb_41:1440630..1441706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCCTTAATACTCGTTGGTGGTTTCGGCACCCGCTTGCGCCCCCT
CACGCTTTCTGTGCCCAAGCCGCTGGTCCATTTCTGCAACAAGCCCATGA
TACTGCACCAGATTGAGGCTCTCGTCGCCGTTGGCGTCACAGAAGTTGTT
CTTGCCGTCAACTACCAGCCCGAAAAGATGCAGGCCTTCCTCAAGGAACA
AGCTGCCAAGCTTGGAATCAAGATTACAACATCGCAGGAGACCGAACCGC
TCGGTACCGCCGGGCCCATTAAGCTAGCAGAACCTTTCCTCAACGACGGT
GAGCCATTCTTCGTACTTAACTCCGACGTGTCGTGCGAATATCCCTTCGA
GGACATGATTGCTTTTCAAAAGAAGACAAATGCTGCTGGTGTGCTCATGG
CTACTCCTGTGGAGGACCCCTCTAAATTTGGTGTCATTCTCTACGAAGAG
AGCGGCCGCATCAAGGACTTTGTCGAAAAACCTTCAACCTTCATTTCACG
CTACATCAACGCCGGAATCTATTATCTGACACCTGAGGTGTTTGATCGTA
TTGAACTGCGACCCACTTCCATAGAGAAGGAAGTATTCCCCCCGATGGCG
GCTGATGGGTCGCTGTACGTCATGGAACTCAAGGGCTTTTGGGCTGACGT
CGGTCAACCGAAAGATTACCTTATTGGCCAGTCTCTGAAACTCAATGCTC
TGTCAAAGCGGGACCCGGAAGCACTCGTTGCTGGCGAAAGGTACACAGGA
AACGTCATGGTTCACTCCACAGCCAAGATTGGTCAGGGCTGCTCGATTGG
TCCGGATGTTGTTATCGGTGCAAACTGCGTTATTGGCGACGGCACGCGTA
TCAAGTCAGCCACCATCCTGCCAGGCACTAAGGTAGGAATGCACTCGTAT
ATTGAAAAGAGTATCATTGGGTGGGAGTCAAGCATTGGGAATTGGGTACG
TATCGAAGAAAACTCAGTTCTCGGAGAGAACGTGACTGTCAAGGACGAGT
TCCACTTGCACTCGTCGATTGTCCTTCCTCACAAAGGTGTCAAATGTAGC
CTGAAACCAGGCACCATCGTGTTGTGA