Gvermi3635.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3635.t1
Unique Name	Gvermi3635.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3710128..3711015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr47050
Max annot lvl	2836\|Bacillariophyta
Evalue	8.08e-63
EggNOG OGs	2AK91@1\|root,2RZ90@2759\|Eukaryota,2XE91@2836\|Bacillariophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3635	Gvermi3635	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3710128..3711015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3635.t1.start1	Gvermi3635.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3710128..3710130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3635.t1.CDS1	Gvermi3635.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3710128..3711015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3635.t1.exon1	Gvermi3635.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3710128..3711015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3635.t1.stop1	Gvermi3635.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3711013..3711015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3635.t1	Gvermi3635.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3710128..3711015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3710128..3711015+
coding sequence from alignment at ScGOVlb_41:3710128..3711015+

mRNA sequence

>Gvermi3635.t1 ID=Gvermi3635.t1|Name=Gvermi3635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=296bp
MGSSSSPAPPPSSPQTPRIDARAFYTTYHGHPTPDLQKLAVSPRQQPVIW
LLGDSTLDNKFWLPFREEPHPNALHARLLDHPVLKRDLSYWLNTLYPACV
TINCAVEATTVAQRNTCLLPQDAIVRDNLTEDDIVVVSLGGNDVALSPSL
RTVFSVLSQMYTTSSLGFSHLVSLFGDAVNKYITRVLSKHRPRLLLVCGL
YFPHESMTPSWASFVLRAMRYNSEPQHLQRLIERVFDAAAASFQIPGVRV
VTVPFYRVLNGKDTSLYVARVEPSENGGQAMATLLHHVIVKELVG*

spliced messenger RNA

>Gvermi3635.t1 ID=Gvermi3635.t1|Name=Gvermi3635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_41:3710128..3711015+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCTCTTCGTCTCCCGCTCCGCCCCCGAGCTCTCCGCAAACGCC
CCGCATTGACGCCCGCGCCTTCTACACCACCTACCACGGCCACCCCACGC
CCGACTTGCAGAAATTAGCTGTGAGTCCCCGACAGCAGCCCGTCATTTGG
TTGTTGGGCGACAGCACGCTCGACAACAAGTTCTGGCTCCCATTTCGCGA
GGAGCCCCATCCAAACGCCTTACACGCGCGCCTCCTCGATCACCCGGTAC
TCAAACGCGACCTTTCATACTGGCTCAACACCTTGTATCCCGCGTGCGTC
ACGATCAACTGCGCCGTCGAGGCCACCACCGTGGCGCAGCGCAACACTTG
CCTTCTACCGCAAGATGCAATCGTTCGCGACAATCTCACCGAAGATGACA
TCGTTGTCGTCAGCCTGGGCGGCAATGACGTCGCTTTGAGTCCCTCTTTA
CGCACAGTGTTTTCCGTGCTTTCTCAGATGTACACCACCTCGTCACTGGG
CTTTTCTCACCTGGTTTCCTTGTTTGGCGATGCGGTGAACAAATATATTA
CCCGCGTGCTCTCCAAGCACCGCCCGCGTCTGCTCCTTGTGTGCGGCCTA
TACTTTCCACACGAGTCCATGACACCTTCATGGGCCTCATTTGTCCtgcg
cgcaatgcgctacaattccgaaccacaacacctgcagcgattgatcgaaa
gagtgtttgatgctgctgctgctTCGTTTCAGATTCCGGGCGTTCGCGTT
GTCACCGTGCCGTTTTACCGTGTCCTGAACGGTAAGGATACCAGTCTTTA
CGTCGCTCGTGTTGAACCTTCTGAAAATGGCGGCCAGGCTATGGCGACCC
TATTGCACCATGTCATTGTGAAGGAACTTGTCGGGTAA

protein sequence of Gvermi3635.t1

>Gvermi3635.t1 ID=Gvermi3635.t1|Name=Gvermi3635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=296bp
MGSSSSPAPPPSSPQTPRIDARAFYTTYHGHPTPDLQKLAVSPRQQPVIW
LLGDSTLDNKFWLPFREEPHPNALHARLLDHPVLKRDLSYWLNTLYPACV
TINCAVEATTVAQRNTCLLPQDAIVRDNLTEDDIVVVSLGGNDVALSPSL
RTVFSVLSQMYTTSSLGFSHLVSLFGDAVNKYITRVLSKHRPRLLLVCGL
YFPHESMTPSWASFVLRAMRYNSEPQHLQRLIERVFDAAAASFQIPGVRV
VTVPFYRVLNGKDTSLYVARVEPSENGGQAMATLLHHVIVKELVG*

mRNA from alignment at ScGOVlb_41:3710128..3711015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3635.t1 ID=Gvermi3635.t1|Name=Gvermi3635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_41:3710128..3711015+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCTCTTCGTCTCCCGCTCCGCCCCCGAGCTCTCCGCAAACGCC
CCGCATTGACGCCCGCGCCTTCTACACCACCTACCACGGCCACCCCACGC
CCGACTTGCAGAAATTAGCTGTGAGTCCCCGACAGCAGCCCGTCATTTGG
TTGTTGGGCGACAGCACGCTCGACAACAAGTTCTGGCTCCCATTTCGCGA
GGAGCCCCATCCAAACGCCTTACACGCGCGCCTCCTCGATCACCCGGTAC
TCAAACGCGACCTTTCATACTGGCTCAACACCTTGTATCCCGCGTGCGTC
ACGATCAACTGCGCCGTCGAGGCCACCACCGTGGCGCAGCGCAACACTTG
CCTTCTACCGCAAGATGCAATCGTTCGCGACAATCTCACCGAAGATGACA
TCGTTGTCGTCAGCCTGGGCGGCAATGACGTCGCTTTGAGTCCCTCTTTA
CGCACAGTGTTTTCCGTGCTTTCTCAGATGTACACCACCTCGTCACTGGG
CTTTTCTCACCTGGTTTCCTTGTTTGGCGATGCGGTGAACAAATATATTA
CCCGCGTGCTCTCCAAGCACCGCCCGCGTCTGCTCCTTGTGTGCGGCCTA
TACTTTCCACACGAGTCCATGACACCTTCATGGGCCTCATTTGTCCtgcg
cgcaatgcgctacaattccgaaccacaacacctgcagcgattgatcgaaa
gagtgtttgatgctgctgctgctTCGTTTCAGATTCCGGGCGTTCGCGTT
GTCACCGTGCCGTTTTACCGTGTCCTGAACGGTAAGGATACCAGTCTTTA
CGTCGCTCGTGTTGAACCTTCTGAAAATGGCGGCCAGGCTATGGCGACCC
TATTGCACCATGTCATTGTGAAGGAACTTGTCGGGTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:3710128..3711015+

>Gvermi3635.t1 ID=Gvermi3635.t1|Name=Gvermi3635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=888bp|location=Sequence derived from alignment at ScGOVlb_41:3710128..3711015+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCTCTTCGTCTCCCGCTCCGCCCCCGAGCTCTCCGCAAACGCC
CCGCATTGACGCCCGCGCCTTCTACACCACCTACCACGGCCACCCCACGC
CCGACTTGCAGAAATTAGCTGTGAGTCCCCGACAGCAGCCCGTCATTTGG
TTGTTGGGCGACAGCACGCTCGACAACAAGTTCTGGCTCCCATTTCGCGA
GGAGCCCCATCCAAACGCCTTACACGCGCGCCTCCTCGATCACCCGGTAC
TCAAACGCGACCTTTCATACTGGCTCAACACCTTGTATCCCGCGTGCGTC
ACGATCAACTGCGCCGTCGAGGCCACCACCGTGGCGCAGCGCAACACTTG
CCTTCTACCGCAAGATGCAATCGTTCGCGACAATCTCACCGAAGATGACA
TCGTTGTCGTCAGCCTGGGCGGCAATGACGTCGCTTTGAGTCCCTCTTTA
CGCACAGTGTTTTCCGTGCTTTCTCAGATGTACACCACCTCGTCACTGGG
CTTTTCTCACCTGGTTTCCTTGTTTGGCGATGCGGTGAACAAATATATTA
CCCGCGTGCTCTCCAAGCACCGCCCGCGTCTGCTCCTTGTGTGCGGCCTA
TACTTTCCACACGAGTCCATGACACCTTCATGGGCCTCATTTGTCCtgcg
cgcaatgcgctacaattccgaaccacaacacctgcagcgattgatcgaaa
gagtgtttgatgctgctgctgctTCGTTTCAGATTCCGGGCGTTCGCGTT
GTCACCGTGCCGTTTTACCGTGTCCTGAACGGTAAGGATACCAGTCTTTA
CGTCGCTCGTGTTGAACCTTCTGAAAATGGCGGCCAGGCTATGGCGACCC
TATTGCACCATGTCATTGTGAAGGAACTTGTCGGGTAA