Gvermi3748.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3748.t1
Unique Name	Gvermi3748.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	537

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4177415..4179025 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709332.1
Preferred name	SLU7
PFAMs	Slu7
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12819,ko:K20040
KEGG Pathway	ko03040,map03040
GOs	GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue	4.24e-130
EggNOG OGs	KOG2560@1\|root,KOG2560@2759\|Eukaryota
Description	RNA splicing
COG category	A
BRITE	ko00000,ko00001,ko03041,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3748	Gvermi3748	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4177415..4179025 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3748.t1.start1	Gvermi3748.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4177415..4177417 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3748.t1.CDS1	Gvermi3748.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4177415..4179025 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3748.t1.exon1	Gvermi3748.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4177415..4179025 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3748.t1.stop1	Gvermi3748.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4179023..4179025 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3748.t1	Gvermi3748.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4177415..4179025 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4177415..4179025+
coding sequence from alignment at ScGOVlb_41:4177415..4179025+

mRNA sequence

>Gvermi3748.t1 ID=Gvermi3748.t1|Name=Gvermi3748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp
MASSNSGFKTREAYKAAKELEEARKAGTAPPAVDSDGKIINPHIPEYIAQ
APWYLQQEGPSLKHQRNHNAQKRKFDQLGAWLPRGQVKGPAATKFRKGAC
ENCGALTHKTKNCIERPRRRGAKLTGSAIRPDEVVGSVNLDFEGKRDRWN
GYDDAEFAKKVHQANTQENITEKKKRKKREDSSGSSSSDDSDDSDDNDEN
VVQQSGEAATTSVRNLRIREDTAKYLYNLDLDSAFYDPKSRSMRADPLPN
IDPDDKDYAGDNFVRFSGDVTTLAHMELTTRKASSAGKQLPHLQAEPSRA
EAVFREFETRKKDMQEKRRAEILDKYGGQEYTVPQPGISDVVETGTYVEY
DAEGRPKKESIGSAPVSAYPEDLLEKNHKAIWGSFFQDGKWGYACCRQTQ
RYAICTGEAGRIAAEEVEKDMEKRVAEAVEKRDPRTLVEQYAEQKEKDDQ
VFTGNEKDKANALREERQRQVRLEHEIRKQQAEENHAILDDRQRGYNSLR
RDGIDGQKVSEEAMEAYRLRRQMNEDPMSKFLSRKS*

spliced messenger RNA

>Gvermi3748.t1 ID=Gvermi3748.t1|Name=Gvermi3748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at ScGOVlb_41:4177415..4179025+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCTCCAACAGCGGCTTCAAGACTCGAGAAGCGTACAAAGCAGC
AAAGGAACTTGAAGAGGCCCGAAAGGCCGGGACGGCGCCCCCTGCAGTAG
ATTCTGATGGAAAGATAATCAACCCACACATTCCAGAGTACATAGCTCAA
GCACCTTGGTACCTACAACAGGAAGGGCCTTCATTAAAACATCAACGGAA
TCATAACGCGCAAAAGCGAAAGTTTGATCAGCTTGGAGCATGGCTTCCTC
GAGGGCAAGTCAAAGGACCGGCAGCCACCAAGTTTCGTAAGGGCGCTTGC
GAAAATTGCGGAGCTCTGACTCACAAAACAAAGAATTGTATTGAACGGCC
TCGCCGACGAGGAGCGAAGCTTACTGGTAGTGCTATTCGGCCTGATGAAG
TTGTAGGCTCAGTTAATCTTGACTTTGAAGGGAAGCGGGATAGGTGGAAT
GGATATGATGATGCAGAGTTTGCTAAGAAGGTCCATCAAGCTAACACACA
AGAAAATATCACagaaaagaagaagcgaaagaagagagaagaTAGTTCTG
GGAGCAGTTCAAGTGATGACAGCGATGATAGTGATGACAACGACGAGAAT
GTTGTACAACAATCCGGAGAAGCTGCGACGACTTCAGTGCGTAATTTGAG
AATACGAGAGGATACTGCCAAGTACCTATATAATTTGGATCTCGACTCAG
CGTTTTATGACCCGAAATCTCGATCCATGCGAGCAGACCCCCTCCCAAAT
ATAGACCCAGATGATAAAGATTATGCTGGCGACAACTTCGTAAGATTTTC
TGGTGATGTGACAACTCTTGCTCATATGGAATTAACAACAAGGAAAGCAT
CCTCTGCTGGAAAACAACTACCACATTTGCAGGCAGAACCATCTCGAGCT
GAAGCTGTCTTTCGAGAATTTGAGACCAGAAAGAAGGACATGCAGGAGAA
ACGTCGCGCCGAGATTCTTGACAAGTACGGTGGGCAAGAATACACTGTTC
CGCAACCCGGAATATCAGACGTCGTCGAAACGGGAACTTATGTGGAGTAC
GATGCCGAAGGGCGCCCCAAGAAAGAGAGCATAGGTAGTGCACCGGTCAG
TGCCTATCCTGAAGATCTGTTGGAGAAGAATCATAAAGCTATATGGGGCA
GTTTCTTTCAAGATGGCAAGTGGGGGTATGCGTGCTGTCGACAAACACAG
CGCTATGCTATCTGCACTGGAGAAGCTGGTCGGATAGCTGCCGAAGAAGT
TGAAAAGGATATGGAAAAGCGGGTCGCGGAGGCAGTGGAGAAACGAGATC
CGCGAACTCTAGTTGAGCAATACGCAGAACAGAAGGAAAAGGATGACCAA
GTTTTTACTGGGAATGAGAAAGACAAAGCAAACGCGTTGAGAGAGGAGCG
GCAACGCCAAGTTCGTCTCGAACATGAAATTCGGAAACAGCAGGCTGAAG
AGAATCACGCCATTCTTGATGATCGGCAACGAGGTTATAATTCTCTCCGG
CGAGATGGCATCGACGGTCAAAAAGTTTCCGAGGAAGCTATGGAAGCGTA
CAGATTGCGTCGGCAAATGAACGAGGATCCCATGAGTAAATTTCTTTCTC
GGAAATCGTGA

protein sequence of Gvermi3748.t1

>Gvermi3748.t1 ID=Gvermi3748.t1|Name=Gvermi3748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=537bp
MASSNSGFKTREAYKAAKELEEARKAGTAPPAVDSDGKIINPHIPEYIAQ
APWYLQQEGPSLKHQRNHNAQKRKFDQLGAWLPRGQVKGPAATKFRKGAC
ENCGALTHKTKNCIERPRRRGAKLTGSAIRPDEVVGSVNLDFEGKRDRWN
GYDDAEFAKKVHQANTQENITEKKKRKKREDSSGSSSSDDSDDSDDNDEN
VVQQSGEAATTSVRNLRIREDTAKYLYNLDLDSAFYDPKSRSMRADPLPN
IDPDDKDYAGDNFVRFSGDVTTLAHMELTTRKASSAGKQLPHLQAEPSRA
EAVFREFETRKKDMQEKRRAEILDKYGGQEYTVPQPGISDVVETGTYVEY
DAEGRPKKESIGSAPVSAYPEDLLEKNHKAIWGSFFQDGKWGYACCRQTQ
RYAICTGEAGRIAAEEVEKDMEKRVAEAVEKRDPRTLVEQYAEQKEKDDQ
VFTGNEKDKANALREERQRQVRLEHEIRKQQAEENHAILDDRQRGYNSLR
RDGIDGQKVSEEAMEAYRLRRQMNEDPMSKFLSRKS*

mRNA from alignment at ScGOVlb_41:4177415..4179025+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3748.t1 ID=Gvermi3748.t1|Name=Gvermi3748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at ScGOVlb_41:4177415..4179025+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCTCCAACAGCGGCTTCAAGACTCGAGAAGCGTACAAAGCAGC
AAAGGAACTTGAAGAGGCCCGAAAGGCCGGGACGGCGCCCCCTGCAGTAG
ATTCTGATGGAAAGATAATCAACCCACACATTCCAGAGTACATAGCTCAA
GCACCTTGGTACCTACAACAGGAAGGGCCTTCATTAAAACATCAACGGAA
TCATAACGCGCAAAAGCGAAAGTTTGATCAGCTTGGAGCATGGCTTCCTC
GAGGGCAAGTCAAAGGACCGGCAGCCACCAAGTTTCGTAAGGGCGCTTGC
GAAAATTGCGGAGCTCTGACTCACAAAACAAAGAATTGTATTGAACGGCC
TCGCCGACGAGGAGCGAAGCTTACTGGTAGTGCTATTCGGCCTGATGAAG
TTGTAGGCTCAGTTAATCTTGACTTTGAAGGGAAGCGGGATAGGTGGAAT
GGATATGATGATGCAGAGTTTGCTAAGAAGGTCCATCAAGCTAACACACA
AGAAAATATCACagaaaagaagaagcgaaagaagagagaagaTAGTTCTG
GGAGCAGTTCAAGTGATGACAGCGATGATAGTGATGACAACGACGAGAAT
GTTGTACAACAATCCGGAGAAGCTGCGACGACTTCAGTGCGTAATTTGAG
AATACGAGAGGATACTGCCAAGTACCTATATAATTTGGATCTCGACTCAG
CGTTTTATGACCCGAAATCTCGATCCATGCGAGCAGACCCCCTCCCAAAT
ATAGACCCAGATGATAAAGATTATGCTGGCGACAACTTCGTAAGATTTTC
TGGTGATGTGACAACTCTTGCTCATATGGAATTAACAACAAGGAAAGCAT
CCTCTGCTGGAAAACAACTACCACATTTGCAGGCAGAACCATCTCGAGCT
GAAGCTGTCTTTCGAGAATTTGAGACCAGAAAGAAGGACATGCAGGAGAA
ACGTCGCGCCGAGATTCTTGACAAGTACGGTGGGCAAGAATACACTGTTC
CGCAACCCGGAATATCAGACGTCGTCGAAACGGGAACTTATGTGGAGTAC
GATGCCGAAGGGCGCCCCAAGAAAGAGAGCATAGGTAGTGCACCGGTCAG
TGCCTATCCTGAAGATCTGTTGGAGAAGAATCATAAAGCTATATGGGGCA
GTTTCTTTCAAGATGGCAAGTGGGGGTATGCGTGCTGTCGACAAACACAG
CGCTATGCTATCTGCACTGGAGAAGCTGGTCGGATAGCTGCCGAAGAAGT
TGAAAAGGATATGGAAAAGCGGGTCGCGGAGGCAGTGGAGAAACGAGATC
CGCGAACTCTAGTTGAGCAATACGCAGAACAGAAGGAAAAGGATGACCAA
GTTTTTACTGGGAATGAGAAAGACAAAGCAAACGCGTTGAGAGAGGAGCG
GCAACGCCAAGTTCGTCTCGAACATGAAATTCGGAAACAGCAGGCTGAAG
AGAATCACGCCATTCTTGATGATCGGCAACGAGGTTATAATTCTCTCCGG
CGAGATGGCATCGACGGTCAAAAAGTTTCCGAGGAAGCTATGGAAGCGTA
CAGATTGCGTCGGCAAATGAACGAGGATCCCATGAGTAAATTTCTTTCTC
GGAAATCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:4177415..4179025+

>Gvermi3748.t1 ID=Gvermi3748.t1|Name=Gvermi3748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1611bp|location=Sequence derived from alignment at ScGOVlb_41:4177415..4179025+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCTCCAACAGCGGCTTCAAGACTCGAGAAGCGTACAAAGCAGC
AAAGGAACTTGAAGAGGCCCGAAAGGCCGGGACGGCGCCCCCTGCAGTAG
ATTCTGATGGAAAGATAATCAACCCACACATTCCAGAGTACATAGCTCAA
GCACCTTGGTACCTACAACAGGAAGGGCCTTCATTAAAACATCAACGGAA
TCATAACGCGCAAAAGCGAAAGTTTGATCAGCTTGGAGCATGGCTTCCTC
GAGGGCAAGTCAAAGGACCGGCAGCCACCAAGTTTCGTAAGGGCGCTTGC
GAAAATTGCGGAGCTCTGACTCACAAAACAAAGAATTGTATTGAACGGCC
TCGCCGACGAGGAGCGAAGCTTACTGGTAGTGCTATTCGGCCTGATGAAG
TTGTAGGCTCAGTTAATCTTGACTTTGAAGGGAAGCGGGATAGGTGGAAT
GGATATGATGATGCAGAGTTTGCTAAGAAGGTCCATCAAGCTAACACACA
AGAAAATATCACagaaaagaagaagcgaaagaagagagaagaTAGTTCTG
GGAGCAGTTCAAGTGATGACAGCGATGATAGTGATGACAACGACGAGAAT
GTTGTACAACAATCCGGAGAAGCTGCGACGACTTCAGTGCGTAATTTGAG
AATACGAGAGGATACTGCCAAGTACCTATATAATTTGGATCTCGACTCAG
CGTTTTATGACCCGAAATCTCGATCCATGCGAGCAGACCCCCTCCCAAAT
ATAGACCCAGATGATAAAGATTATGCTGGCGACAACTTCGTAAGATTTTC
TGGTGATGTGACAACTCTTGCTCATATGGAATTAACAACAAGGAAAGCAT
CCTCTGCTGGAAAACAACTACCACATTTGCAGGCAGAACCATCTCGAGCT
GAAGCTGTCTTTCGAGAATTTGAGACCAGAAAGAAGGACATGCAGGAGAA
ACGTCGCGCCGAGATTCTTGACAAGTACGGTGGGCAAGAATACACTGTTC
CGCAACCCGGAATATCAGACGTCGTCGAAACGGGAACTTATGTGGAGTAC
GATGCCGAAGGGCGCCCCAAGAAAGAGAGCATAGGTAGTGCACCGGTCAG
TGCCTATCCTGAAGATCTGTTGGAGAAGAATCATAAAGCTATATGGGGCA
GTTTCTTTCAAGATGGCAAGTGGGGGTATGCGTGCTGTCGACAAACACAG
CGCTATGCTATCTGCACTGGAGAAGCTGGTCGGATAGCTGCCGAAGAAGT
TGAAAAGGATATGGAAAAGCGGGTCGCGGAGGCAGTGGAGAAACGAGATC
CGCGAACTCTAGTTGAGCAATACGCAGAACAGAAGGAAAAGGATGACCAA
GTTTTTACTGGGAATGAGAAAGACAAAGCAAACGCGTTGAGAGAGGAGCG
GCAACGCCAAGTTCGTCTCGAACATGAAATTCGGAAACAGCAGGCTGAAG
AGAATCACGCCATTCTTGATGATCGGCAACGAGGTTATAATTCTCTCCGG
CGAGATGGCATCGACGGTCAAAAAGTTTCCGAGGAAGCTATGGAAGCGTA
CAGATTGCGTCGGCAAATGAACGAGGATCCCATGAGTAAATTTCTTTCTC
GGAAATCGTGA