Gvermi3233.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3233.t1
Unique NameGvermi3233.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:706655..708017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6183.Smp_130570.1
Preferred nameptp-3
PFAMsIg_3,Y_phosphatase,fn3
Max annot lvl33208|Metazoa
KEGG koko:K05695,ko:K06777,ko:K16667
KEGG Pathwayko04514,ko04520,ko04910,ko04931,map04514,map04520,map04910,map04931
GOsGO:0000902,GO:0000904,GO:0001764,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0004888,GO:0005001,GO:0005575,GO:0005912,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007399,GO:0007409,GO:0007411,GO:0007416,GO:0008045,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009605,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010171,GO:0010172,GO:0016043,GO:0016311,GO:0016477,GO:0016787,GO:0016788,GO:0016791,GO:0019198,GO:0019538,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0035335,GO:0035418,GO:0036211,GO:0038023,GO:0040011,GO:0042221,GO:0042330,GO:0042578,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045202,GO:0048468,GO:0048598,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0060089,GO:0061564,GO:0065007,GO:0070161,GO:0071704,GO:0071840,GO:0097402,GO:0097485,GO:0120036,GO:0120039,GO:0140096,GO:1901564
Evalue6.46e-32
EggNOG OGsCOG5599@1|root,KOG3510@1|root,KOG3510@2759|Eukaryota,KOG4228@2759|Eukaryota,38C1K@33154|Opisthokonta,3BA83@33208|Metazoa,3CXCZ@33213|Bilateria
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3233Gvermi3233Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 706655..708017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3233.t1Gvermi3233.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 706655..708017 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3233.t1.start1Gvermi3233.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 706655..706657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3233.t1.CDS1Gvermi3233.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 706655..706750 +
Gvermi3233.t1.CDS2Gvermi3233.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 706893..708017 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3233.t1.exon1Gvermi3233.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 706655..706750 +
Gvermi3233.t1.exon2Gvermi3233.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 706893..708017 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3233.t1.intron1Gvermi3233.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 706751..706892 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3233.t1.stop1Gvermi3233.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 708015..708017 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3233.t1 ID=Gvermi3233.t1|Name=Gvermi3233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
MDNYITVLEDRMHQMEKVPTNSFNHSYAGEFDMLLGVDRKAVRNLSEFET
STKVENSYRNRYANILSNERTRVKLKDIAPGGNDYINANLVTGNRGHPGY
IATQAPLPETTPHFWQMVYESVSPVIIMLTREQEDYCDVVKSDQYWPPVG
ENLLFDDYLVHGIDQNTDNENGVIQRRFQVGRVVDKRKKHARDLVHADSL
IPPATDGTVWQTPARGRAHSPGAEDEFDCSDEELFRNLELIGPVLDVVQL
QYLDWPDQNVPSHPGTLLELCRRVDEILSAHYVKTRVSAPPIVHCSAGVG
RTGTFIAIDRTLRRLWDAFSASCDEGREPVPVEEIRELVRRLKIERSKMV
QTAEQYKFIYEAVLAGMRSWREGKRLFGAQVYASGDSACDAHGDAPTVKQ
RPQQDG*
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spliced messenger RNA

>Gvermi3233.t1 ID=Gvermi3233.t1|Name=Gvermi3233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_41:706655..708017+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACTACATCACCGTCCTCGAGGACCGTATGCACCAGATGGAGAA
GGTTCCCACCAATTCGTTCAACCATTCCTATGCCGGCGAGTTTGATATGC
TACTGGGTGTGGACAGAAAAGCCGTCCGCAACCTCTCAGAGTTTGAGACC
AGCACCAAGGTTGAGAATTCCTACCGAAACAGATATGCCAACATCCTTTC
CAACGAGCGCACCCGCGTCAAGCTCAAGGACATTGCGCCGGGAGGAAACG
ACTACATCAACGCCAACCTCGTCACAGGCAACCGCGGCCACCCCGGCTAC
ATAGCAACCCAGGCGCCACTTCCCGAGACCACCCCCCACTTTTGGCAAAT
GGTGTACGAATCCGTGTCACCTGTCATAATTATGCTCACGAGAGAGCAAG
AGGATTATTGCGACGTGGTGAAAAGCGATCAGTACTGGCCCCCCGTGGGC
GAAAATCTTCTGTTTGACGACTACCTCGTGCACGGCATCGACCAGAACAC
CGACAACGAAAACGGTGTCATACAGCGCCGCTTCCAAGTCGGGCGTGTCG
TCGACAAGCGGAAAAAGCACGCGAGAGACCTGGTGCACGCCGACTCACTC
ATCCCGCCCGCCACGGACGGCACCGTGTGGCAGACACCTGCGAGAGGTCG
CGCGCATTCGCCCGGCGCCGAAGACGAGTTTGACTGTAGCGACGAGGAAC
TGTTTCGAAACCTCGAACTGATCGGACCCGTTTTGGACGTTGTGCAGTTG
CAGTACCTCGACTGGCCGGACCAGAACGTCCCCTCGCATCCGGGCACGCT
GCTGGAGCTGTGCAGAAGAGTGGACGAAATCCTCTCGGCGCACTACGTGA
AGACCAGAGTGTCTGCGCCGCCAATCGTGCACTGCTCTGCGGGCGTGGGC
AGAACCGGCACGTTTATTGCCATTGACAGAACGCTGAGACGGCTGTGGGA
CGCGTTTTCGGCTTCGTGCGACGAAGGTCGGGAGCCGGTGCCCGTGGAGG
AAATCAGGGAACTGGTGCGCAGGCTGAAAATCGAACGCAGCAAGATGGTG
CAAACTGCCGAGCAGTACAAATTCATCTACGAGGCGGTGCTGGCGGGCAT
GCGCAGCTGGCGGGAGGGGAAGCGGCTTTTCGGGGCGCAGGTGTATGCCA
GTGGGGACAGCGCTTGTGACGCCCATGGGGATGCGCCGACTGTAAAGCAA
CGGCCGCAGCAAGACGGGTGA
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protein sequence of Gvermi3233.t1

>Gvermi3233.t1 ID=Gvermi3233.t1|Name=Gvermi3233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MDNYITVLEDRMHQMEKVPTNSFNHSYAGEFDMLLGVDRKAVRNLSEFET
STKVENSYRNRYANILSNERTRVKLKDIAPGGNDYINANLVTGNRGHPGY
IATQAPLPETTPHFWQMVYESVSPVIIMLTREQEDYCDVVKSDQYWPPVG
ENLLFDDYLVHGIDQNTDNENGVIQRRFQVGRVVDKRKKHARDLVHADSL
IPPATDGTVWQTPARGRAHSPGAEDEFDCSDEELFRNLELIGPVLDVVQL
QYLDWPDQNVPSHPGTLLELCRRVDEILSAHYVKTRVSAPPIVHCSAGVG
RTGTFIAIDRTLRRLWDAFSASCDEGREPVPVEEIRELVRRLKIERSKMV
QTAEQYKFIYEAVLAGMRSWREGKRLFGAQVYASGDSACDAHGDAPTVKQ
RPQQDG*
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mRNA from alignment at ScGOVlb_41:706655..708017+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3233.t1 ID=Gvermi3233.t1|Name=Gvermi3233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1363bp|location=Sequence derived from alignment at ScGOVlb_41:706655..708017+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAACTACATCACCGTCCTCGAGGACCGTATGCACCAGATGGAGAA
GGTTCCCACCAATTCGTTCAACCATTCCTATGCCGGCGAGTTTGATGTAA
GTGTTTTTGCCCGTTTCCCGCTGCCTAATCTTTCTGCTGGCTGCGCTCAG
CTTTTGCAAACCGCGCGCTGACCGACGCCCTCCGCCTTTTTCCTTGCTGC
GTTTCGCGTCATGTTGTTCCGTTGTGCCTTCGCTGCAGATGCTACTGGGT
GTGGACAGAAAAGCCGTCCGCAACCTCTCAGAGTTTGAGACCAGCACCAA
GGTTGAGAATTCCTACCGAAACAGATATGCCAACATCCTTTCCAACGAGC
GCACCCGCGTCAAGCTCAAGGACATTGCGCCGGGAGGAAACGACTACATC
AACGCCAACCTCGTCACAGGCAACCGCGGCCACCCCGGCTACATAGCAAC
CCAGGCGCCACTTCCCGAGACCACCCCCCACTTTTGGCAAATGGTGTACG
AATCCGTGTCACCTGTCATAATTATGCTCACGAGAGAGCAAGAGGATTAT
TGCGACGTGGTGAAAAGCGATCAGTACTGGCCCCCCGTGGGCGAAAATCT
TCTGTTTGACGACTACCTCGTGCACGGCATCGACCAGAACACCGACAACG
AAAACGGTGTCATACAGCGCCGCTTCCAAGTCGGGCGTGTCGTCGACAAG
CGGAAAAAGCACGCGAGAGACCTGGTGCACGCCGACTCACTCATCCCGCC
CGCCACGGACGGCACCGTGTGGCAGACACCTGCGAGAGGTCGCGCGCATT
CGCCCGGCGCCGAAGACGAGTTTGACTGTAGCGACGAGGAACTGTTTCGA
AACCTCGAACTGATCGGACCCGTTTTGGACGTTGTGCAGTTGCAGTACCT
CGACTGGCCGGACCAGAACGTCCCCTCGCATCCGGGCACGCTGCTGGAGC
TGTGCAGAAGAGTGGACGAAATCCTCTCGGCGCACTACGTGAAGACCAGA
GTGTCTGCGCCGCCAATCGTGCACTGCTCTGCGGGCGTGGGCAGAACCGG
CACGTTTATTGCCATTGACAGAACGCTGAGACGGCTGTGGGACGCGTTTT
CGGCTTCGTGCGACGAAGGTCGGGAGCCGGTGCCCGTGGAGGAAATCAGG
GAACTGGTGCGCAGGCTGAAAATCGAACGCAGCAAGATGGTGCAAACTGC
CGAGCAGTACAAATTCATCTACGAGGCGGTGCTGGCGGGCATGCGCAGCT
GGCGGGAGGGGAAGCGGCTTTTCGGGGCGCAGGTGTATGCCAGTGGGGAC
AGCGCTTGTGACGCCCATGGGGATGCGCCGACTGTAAAGCAACGGCCGCA
GCAAGACGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:706655..708017+

>Gvermi3233.t1 ID=Gvermi3233.t1|Name=Gvermi3233.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1221bp|location=Sequence derived from alignment at ScGOVlb_41:706655..708017+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAACTACATCACCGTCCTCGAGGACCGTATGCACCAGATGGAGAA
GGTTCCCACCAATTCGTTCAACCATTCCTATGCCGGCGAGTTTGATATGC
TACTGGGTGTGGACAGAAAAGCCGTCCGCAACCTCTCAGAGTTTGAGACC
AGCACCAAGGTTGAGAATTCCTACCGAAACAGATATGCCAACATCCTTTC
CAACGAGCGCACCCGCGTCAAGCTCAAGGACATTGCGCCGGGAGGAAACG
ACTACATCAACGCCAACCTCGTCACAGGCAACCGCGGCCACCCCGGCTAC
ATAGCAACCCAGGCGCCACTTCCCGAGACCACCCCCCACTTTTGGCAAAT
GGTGTACGAATCCGTGTCACCTGTCATAATTATGCTCACGAGAGAGCAAG
AGGATTATTGCGACGTGGTGAAAAGCGATCAGTACTGGCCCCCCGTGGGC
GAAAATCTTCTGTTTGACGACTACCTCGTGCACGGCATCGACCAGAACAC
CGACAACGAAAACGGTGTCATACAGCGCCGCTTCCAAGTCGGGCGTGTCG
TCGACAAGCGGAAAAAGCACGCGAGAGACCTGGTGCACGCCGACTCACTC
ATCCCGCCCGCCACGGACGGCACCGTGTGGCAGACACCTGCGAGAGGTCG
CGCGCATTCGCCCGGCGCCGAAGACGAGTTTGACTGTAGCGACGAGGAAC
TGTTTCGAAACCTCGAACTGATCGGACCCGTTTTGGACGTTGTGCAGTTG
CAGTACCTCGACTGGCCGGACCAGAACGTCCCCTCGCATCCGGGCACGCT
GCTGGAGCTGTGCAGAAGAGTGGACGAAATCCTCTCGGCGCACTACGTGA
AGACCAGAGTGTCTGCGCCGCCAATCGTGCACTGCTCTGCGGGCGTGGGC
AGAACCGGCACGTTTATTGCCATTGACAGAACGCTGAGACGGCTGTGGGA
CGCGTTTTCGGCTTCGTGCGACGAAGGTCGGGAGCCGGTGCCCGTGGAGG
AAATCAGGGAACTGGTGCGCAGGCTGAAAATCGAACGCAGCAAGATGGTG
CAAACTGCCGAGCAGTACAAATTCATCTACGAGGCGGTGCTGGCGGGCAT
GCGCAGCTGGCGGGAGGGGAAGCGGCTTTTCGGGGCGCAGGTGTATGCCA
GTGGGGACAGCGCTTGTGACGCCCATGGGGATGCGCCGACTGTAAAGCAA
CGGCCGCAGCAAGACGGGTGA
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